HPV molecular assays: Defining analytical and clinical performance characteristics for cervical cytology specimens

Gynecologic Oncology

Volumn 123, Issue 2, 2011, Pages 263-271

  Shen Gunther, Jane ^a   Yu, Xin ^a  

^a BROOKE ARMY MEDICAL CENTER   (United States)

Author keywords

HPV; HPV genotyping; HPV primers; PCR; Quantitative PCR

Indexed keywords

CELL DNA;

ADULT; AMPLICON; ARTICLE; COLPOSCOPY; CONTROLLED STUDY; CROSS-SECTIONAL STUDY; DNA SEQUENCE; EXTRACTION; FEMALE; GEL ELECTROPHORESIS; GENE SEQUENCE; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; MELTING POINT; NONHUMAN; PRIORITY JOURNAL; PROSPECTIVE STUDY; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; UTERINE CERVIX CYTOLOGY; VIRUS DETECTION; VIRUS GENE; VIRUS GENOME; VIRUS LOAD; WART VIRUS;

ADULT; CERVIX UTERI; FEMALE; HUMANS; MIDDLE AGED; PAPILLOMAVIRIDAE; POLYMERASE CHAIN REACTION; PROSPECTIVE STUDIES; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; VIRAL LOAD;

EID: 80054754247     PISSN: 00908258     EISSN: 10956859     Source Type: Journal    
DOI: 10.1016/j.ygyno.2011.07.017     Document Type: Article

References (32)

1. C.K. Ong, S.Y. Chan, M.S. Campo, K. Fujinaga, P. Mavromara-Nazos, and V. Labropoulou Evolution of human papillomavirus type 18: an ancient phylogenetic root in Africa and intratype diversity reflect coevolution with human ethnic groups J Virol 67 1993 6424 6431
2. J.C. Prado, I.E. Calleja-Macias, H.U. Bernard, M. Kalantari, S.A. Macay, and B. Allan Worldwide genomic diversity of the human papillomaviruses-53, 56, and 66, a group of high-risk HPVs unrelated to HPV-16 and HPV-18 Virology 340 2005 95 104
3. H. Bunting, M.J. Strauss, and W.G. Banfield The cytology of skin papillomas that yield virus-like particles Am J Pathol 28 1952 985 1001
4. H.U. Bernard, R.D. Burk, Z. Chen, K. van Doorslaer, H. zur Hausen, and E.M. de Villiers Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments Virology 401 1 May 25 2010 70 79
5. E.M. de Villiers, C. Fauquet, T.R. Broker, H.U. Bernard, and H. zur Hausen Classification of papillomaviruses Virology 324 2004 17 27
6. H.U. Bernard The clinical importance of the nomenclature, evolution and taxonomy of human papillomaviruses J Clin Virol 32 Suppl 1 2005 S1 S6
7. H. zur Hausen Papillomaviruses and cancer: from basic studies to clinical application Nat Rev Cancer 2 2002 342 350
8. O. Forslund Genetic diversity of cutaneous human papillomaviruses J Gen Virol 88 2007 2662 2669
9. N. Termine, V. Panzarella, S. Falaschini, A. Russo, D. Matranga, L. Lo Muzio, and G. Campisi HPV in oral squamous cell carcinoma vs head and neck squamous cell carcinoma biopsies: a meta-analysis (1988-2007) Ann Oncol 19 2008 1681 1690
10. C.M. Nielson, R. Flores, R.B. Harris, M. Abrahamsen, M.R. Papenfuss, and E.F. Dunne Human papillomavirus prevalence and type distribution in male anogenital sites and semen Cancer Epidemiol Biomarkers Prev 16 2007 1107 1114
11. A. Molijn, B. Kleter, W. Quint, and L.J. van Doorn Molecular diagnosis of human papillomavirus (HPV) infections J Clin Virol 32 Suppl 1 2005 S43 S51
12. A.M. de Roda Husman, J.M. Walboomers, A.J. van den Brule, C.J. Meijer, and P.J. Snijders The use of general primers GP5 and GP6 elongated at their 3′ ends with adjacent highly conserved sequences improves human papillomavirus detection by PCR J Gen Virol 76 1995 1057 1062
13. R.M. Resnick, M.T. Cornelissen, D.K. Wright, G.H. Eichinger, H.S. Fox, J. ter Schegget, and M.M. Manos Detection and typing of human papillomavirus in archival cervical cancer specimens by DNA amplification with consensus primers J Natl Cancer Inst 82 18 1990 1477 1484
14. P.J. Snijders, A.J. van den Brule, H.F. Schrijnemakers, G. Snow, C.J. Meijer, and J.M. Walboomers The use of general primers in the polymerase chain reaction permits the detection of a broad spectrum of human papillomavirus genotypes J Gen Virol 71 1990 173 181
15. M.F. Evans, C.S. Adamson, L.M. Schned, T.L. St John, G. Leiman, T. Ashikaga, and K. Cooper HPV is detectable in virtually all abnormal cervical cytology samples after reinvestigation of HPV negatives with multiple alternative PCR tests Diagn Mol Pathol 19 3 2010 144 150
16. O. Forslund, A. Antonsson, P. Nordin, B. Stenquist, and B.G. Hansson A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin J Gen Virol 80 1999 2437 2443
17. L. Buckingham, and M.L. Flaws Nucleic acid amplification L. Buckingham, M.L. Flaws, Molecular diagnostics: fundamentals, methods, and clinical applications 2007 F.A. Davis Co. Philadephia 121 154
18. W. Qu, G. Jiang, Y. Cruz, C.J. Chang, G.Y. Ho, R.S. Klein, and R.D. Burk PCR detection of human papillomavirus: comparison between MY09/MY11 and GP5+/GP6+ primer systems J Clin Microbiol 35 6 1997 1304 1310
19. N. Speich, C. Schmitt, R. Bollmann, and M. Bollmann Human papillomavirus (HPV) study of 2916 cytological samples by PCR and DNA sequencing: genotype spectrum of patients from the west German area J Med Micro 53 2004 125 128
20. National Center for Biotechnology Information (NCBI): nucleotide BLAST program [Internet]; 2011 [cited 2011 Jan 1]. Available from: http://blast.ncbi.nlm.nih.gov/Blast.cgi.
21. S.A. Bustin, V. Benes, J.A. Garson, J. Hellemans, J. Huggett, and M. Kubista The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments Clin Chem 55 4 2009 611 622
22. A.R. Spence, and E.L.F. Franco Screening for cervical cancer using HPV tests J.A. Jordan, A. Singer, H. Jones III.M.I. Shafi, The cervix 2nd ed. 2006 Blackwell Publishing Malden 373 386
23. K. Husnjak, M. Grce, L. Magdić, and K. Pavelić Comparison of five different polymerase chain reaction methods for detection of human papillomavirus in cervical cell specimens J Virol Methods 88 2 2000 125 134
24. G. Fornaciari, K. Zavaglia, L. Giusti, C. Vultaggio, and R. Ciranni Human papillomavirus in a 16th century mummy Lancet 362 2003 1160
25. R.A. Woodruff, R.K. Bonde, J.A. Bonilla, and C.H. Romero Molecular identification of a papilloma virus from cutaneous lesions of captive and free-ranging Florida manatees J Wildl Dis 41 2 2005 Apr 437 441
26. Z. Chen, M. Schiffman, R. Herrero, R. Desalle, and R.D. Burk Human papillomavirus (HPV) types 101 and 103 isolated from cervicovaginal cells lack an E6 open reading frame (ORF) and are related to gamma-papillomaviruses Virology 360 2 2007 447 453 10
27. I. Sabol, M. Cretnik, I. Hadzisejdić, A. Si-Mohamed, M. Matovina, B. Grahovac, S. Levanat, and M. Grce A new approach for the evaluation of the human papillomavirus type 16 variability with high resolution melting analysis J Virol Methods 162 1-2 2009 142 147
28. M.R. de Araujo, L. De Marco, C.F. Santos, I.R. Rubira-Bullen, G. Ronco, and I. Pennini GP5+/6+ SYBR green methodology for simultaneous screening and quantification of human papillomavirus J Clin Virol 45 2 2009 Jun 90 95
29. C.J. Meijer, J. Berkhof, P.E. Castle, A.T. Hesselink, E.L. Franco, and G. Ronco Guidelines for human papillomavirus DNA test requirements for primary cervical cancer screening in women 30 years and older Int J Cancer 124 3 2009 516 520
30. L. Selva, E. Gonzalez-Bosquet, M.T. Rodriguez-Plata, C. Esteva, M. Suñol, and C. Muñoz-Almagro Detection of human papillomavirus infection in women attending a colposcopy clinic Diagn Microbiol Infect Dis 64 4 2009 416 421
31. S. de Sanjosé, M. Diaz, X. Castellsagué, G. Clifford, L. Bruni, N. Muñoz, and F.X. Bosch Worldwide prevalence and genotype distribution of cervical human papillomavirus DNA in women with normal cytology: a meta-analysis Lancet Infect Dis 7 2007 453 459
32. C. Constandinou-Williams, S.I. Collins, S. Roberts, L.S. Young, C.B. Woodman, and P.G. Murray Is human papillomavirus viral load a clinically useful predictive marker? A longitudinal study Cancer Epidemiol Biomarkers Prev 19 3 2010 832 837