A new approach for the evaluation of the human papillomavirus type 16 variability with high resolution melting analysis

Journal of Virological Methods

Volumn 162, Issue 1-2, 2009, Pages 142-147

  Sabol, Ivan ^a   Čretnik, Maja ^a   Hadžisejdić, Ita ^b   Si Mohamed, Ali ^c   Matovina, Mihaela ^a   Grahovac, Blaženka ^b   Levanat, Sonja ^a   Grce, Magdalena ^a  

^a RUDER BO KOVI INSTITUTE   (Croatia)

^b UNIVERSITY OF RIJEKA   (Croatia)

^c HÔPITAL EUROPÉEN GEORGES POMPIDOU   (France)

Author keywords

High resolution melting; Human papillomavirus 16; Sequencing; Variant

Indexed keywords

AMPLICON; ARTICLE; CONTROLLED STUDY; CROATIA; DNA SEQUENCE; EVALUATION; FEMALE; GEOGRAPHIC ORIGIN; HIGH RESOLUTION MELTING ANALYSIS; HUMAN; HUMAN PAPILLOMAVIRUS TYPE 16; HUMAN TISSUE; MAJOR CLINICAL STUDY; NONHUMAN; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; VIRUS GENOME; VIRUS ONCOGENE;

CERVICAL INTRAEPITHELIAL NEOPLASIA; DNA, VIRAL; FEMALE; GENETIC VARIATION; HUMAN PAPILLOMAVIRUS 16; HUMANS; PAPILLOMAVIRUS INFECTIONS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; TRANSITION TEMPERATURE; UTERINE CERVICAL NEOPLASMS; VAGINAL SMEARS;

HUMAN PAPILLOMAVIRUS - 16; HUMAN PAPILLOMAVIRUS TYPE 16;

EID: 70349755376     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.07.029     Document Type: Article

References (28)

1. Bernard H.U., Calleja-Macias I.E., and Dunn S.T. Genome variation of human papillomavirus types: phylogenetic and medical implications. Int. J. Cancer 118 (2006) 1071-1076
2. Bernard H.U., Chan S.Y., Manos M.M., Ong C.K., Villa L.L., Delius H., Peyton C.L., Bauer H.M., and Wheeler C.M. Identification and assessment of known and novel human papillomaviruses by polymerase chain reaction amplification, restriction fragment length polymorphisms, nucleotide sequence, and phylogenetic algorithms. J. Infect. Dis. 170 (1994) 1077-1085
3. Bontkes H.J., van Duin M., de Gruijl T.D., Duggan-Keen M.F., Walboomers J.M., Stukart M.J., Verheijen R.H., Helmerhorst T.J., Meijer C.J., Scheper R.J., Stevens F.R., Dyer P.A., Sinnott P., and Stern P.L. HPV 16 infection and progression of cervical intra-epithelial neoplasia: analysis of HLA polymorphism and HPV 16 E6 sequence variants. Int. J. Cancer 78 (1998) 166-171
4. Brady C.S., Duggan-Keen M.F., Davidson J.A., Varley J.M., and Stern P.L. Human papillomavirus type 16 E6 variants in cervical carcinoma: relationship to host genetic factors and clinical parameters. J. Gen. Virol. 80 Pt 12 (1999) 3233-3240
5. Clifford G.M., Smith J.S., Plummer M., Munoz N., and Franceschi S. Human papillomavirus types in invasive cervical cancer worldwide: a meta-analysis. Br. J. Cancer 88 (2003) 63-73
6. Cvok M.L., Cretnik M., Musani V., Ozretic P., and Levanat S. New sequence variants in BRCA1 and BRCA2 genes detected by high-resolution melting analysis in an elderly healthy female population in Croatia. Clin. Chem. Lab. Med. 46 (2008) 1376-1383
7. de Villiers E.M., Fauquet C., Broker T.R., Bernard H.U., and zur Hausen H. Classification of papillomaviruses. Virology 324 (2004) 17-27
8. Erali M., Voelkerding K.V., and Wittwer C.T. High resolution melting applications for clinical laboratory medicine. Exp. Mol. Pathol. 85 (2008) 50-58
9. Grce M., Husnjak K., Bozikov J., Magdic L., Zlacki M., Lukac J., Fistonic I., Sikanic-Dugic N., and Pavelic K. Evaluation of genital human papillomavirus infections by polymerase chain reaction among Croatian women. Anticancer Res. 21 (2001) 579-584
10. Grodzki M., Besson G., Clavel C., Arslan A., Franceschi S., Birembaut P., Tommasino M., and Zehbe I. Increased risk for cervical disease progression of French women infected with the human papillomavirus type 16 E6-350G variant. Cancer Epidemiol. Biomarkers Prev. 15 (2006) 820-822
11. Ho L., Chan S.Y., Burk R.D., Das B.C., Fujinaga K., Icenogle J.P., Kahn T., Kiviat N., Lancaster W., and Mavromara-Nazos P. The genetic drift of human papillomavirus type 16 is a means of reconstructing prehistoric viral spread and the movement of ancient human populations. J. Virol. 67 (1993) 6413-6423
12. Ho L., Tay S.K., Chan S.Y., and Bernard H.U. Sequence variants of human papillomavirus type 16 from couples suggest sexual transmission with low infectivity and polyclonality in genital neoplasia. J. Infect. Dis. 168 (1993) 803-809
13. IARC. Human Papillomaviruses Vol. 90 (2007), International Agency for Research on Cancer (IARC), World Health Organization
14. Lin J.H., Tseng C.P., Chen Y.J., Lin C.Y., Chang S.S., Wu H.S., and Cheng J.C. Rapid differentiation of influenza A virus subtypes and genetic screening for virus variants by high-resolution melting analysis. J. Clin. Microbiol. 46 (2008) 1090-1097
15. Ljubojevic N., Babic S., Audy-Jurkovic S., Ovanin-Rakic A., Jukic S., Babic D., Grubisic G., Radakovic B., and Ljubojevic-Grgec D. Improved national Croatian diagnostic and therapeutic guidelines for premalignant lesions of the uterine cervix with some cost-benefit aspects. Coll. Antropol. 25 (2001) 467-474
16. Milutin-Gasperov N., Sabol I., Halec G., Matovina M., and Grce M. Retrospective study of the prevalence of high-risk human papillomaviruses among Croatian women. Coll. Antropol. 31 2 (2007) 89-96
17. Munoz N., Bosch F.X., de Sanjose S., Herrero R., Castellsague X., Shah K.V., Snijders P.J., and Meijer C.J. Epidemiologic classification of human papillomavirus types associated with cervical cancer. N. Engl. J. Med. 348 (2003) 518-527
18. Nindl I., Rindfleisch K., Lotz B., Schneider A., and Durst M. Uniform distribution of HPV 16 E6 and E7 variants in patients with normal histology, cervical intra-epithelial neoplasia and cervical cancer. Int. J. Cancer 82 (1999) 203-207
19. Ortiz M., Torres M., Munoz L., Fernandez-Garcia E., Canals J., Cabornero A.I., Aguilar E., Ballesteros J., Del Amo J., and Garcia-Saiz A. Oncogenic human papillomavirus (HPV) type distribution and HPV 16 E6 variants in two Spanish population groups with different levels of HPV infection risk. J. Clin. Microbiol. 44 (2006) 1428-1434
20. Reed G.H., and Wittwer C.T. Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin. Chem. 50 (2004) 1748-1754
21. Sotlar K., Diemer D., Dethleffs A., Hack Y., Stubner A., Vollmer N., Menton S., Menton M., Dietz K., Wallwiener D., Kandolf R., and Bultmann B. Detection and typing of human papillomavirus by e6 nested multiplex PCR. J. Clin. Microbiol. 42 (2004) 3176-3184
22. Si-Mohamed A., Ndjoyi-Mbiguino A., Cuschieri K., Onas I.N., Colombet I., Ozouaki F., Goff J.L., Cubie H., and Bélec L. High prevalence of high-risk oncogenic human papillomaviruses harboring atypical distribution in women of childbearing age living in Libreville, Gabon. J. Med. Virol. 77 (2005) 430-438
23. Stephens A.J., Inman-Bamber J., Giffard P.M., and Huygens F. High-resolution melting analysis of the spa repeat region of Staphylococcus aureus. Clin. Chem. 54 (2008) 432-436
24. van Duin M., Snijders P.J., Vossen M.T., Klaassen E., Voorhorst F., Verheijen R.H., Helmerhorst T.J., Meijer C.J., and Walboomers J.M. Analysis of human papillomavirus type 16 E6 variants in relation to p53 codon 72 polymorphism genotypes in cervical carcinogenesis. J. Gen. Virol. 81 (2000) 317-325
25. Wittwer C.T., Reed G.H., Gundry C.N., Vandersteen J.G., and Pryor R.J. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin. Chem. 49 (2003) 853-860
26. Yamada T., Manos M.M., Peto J., Greer C.E., Munoz N., Bosch F.X., and Wheeler C.M. Human papillomavirus type 16 sequence variation in cervical cancers: a worldwide perspective. J. Virol. 71 (1997) 2463-2472
27. Zehbe I., Voglino G., Delius H., Wilander E., and Tommasino M. Risk of cervical cancer and geographical variations of human papillomavirus 16 E6 polymorphisms. Lancet 352 (1998) 1441-1442
28. Zehbe I., Wilander E., Delius H., and Tommasino M. Human papillomavirus 16 E6 variants are more prevalent in invasive cervical carcinoma than the prototype. Cancer Res. 58 (1998) 829-833