Surface plasmon resonance biosensing in studies of the binding between β 2 integrin i domains and their ligands

Methods in Molecular Biology

Volumn 757, Issue , 2011, Pages 55-71

  Vorup Jensen, Thomas ^a  

^a AARHUS UNIVERSITY   (Denmark)

Author keywords

Heterogeneous surface binding; I domain; Integrins; Surface plasmon resonance

Indexed keywords

CD18 ANTIGEN; LIGAND;

ARTICLE; KINETICS; METABOLISM; MICROCHIP ANALYSIS; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; SURFACE PLASMON RESONANCE;

ANTIGENS, CD18; KINETICS; LIGANDS; MICROCHIP ANALYTICAL PROCEDURES; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SURFACE PLASMON RESONANCE;

EID: 80054741216     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-166-6_5     Document Type: Article

References (35)

1. Freifelder, D. (1999) Physical Biochemistry, 2nd ed., W. H. Freeman & Co., New York.
2. Price, N. C., and Dwek, R. A. (1974) Principles and Problems in Physical Chemistry for Biochemists, Clarendon Press, Oxford.
3. Piliarik, M., Vaisocherova, H., and Homola, J. (2009) Surface plasmon resonance biosensing, Methods Mol. Biol. 503, 65-88.
4. Rich, R. L., and Myszka, D. G. (2007) Higherthroughput, label-free, real-time molecular interaction analysis, Anal. Biochem. 361, 1-6. (Pubitemid 46026999)
5. Schuck, P. (1997) Use of surface plasmon resonance to probe the equilibrium and dynamic aspects of interactions between biological macromolecules, Annu. Rev. Biophys. Biomol. Struct. 26, 541-566. (Pubitemid 27255383)
6. Karlsson, R., and Larsson, A. (2004) Affinity measurement using surface plasmon resonance, Methods Mol. Biol. 248, 389-415.
7. Hynes, R. O. (2002) Integrins: Bidirectional, Allosteric Signaling Machines, Cell 110, 673-687. (Pubitemid 35283958)
8. Springer, T. A. (1990) Adhesion receptors of the immune system, Nature 346, 425-434.
9. Springer, T. A. (1997) Folding of the N-terminal, ligand-binding region of integrin alpha-subunits into a beta-propeller domain, Proc. Natl. Acad. Sci. USA. 94, 65-72.
10. Pytela, R. (1988) Amino acid sequence of the murine Mac-1 alpha chain reveals homology with the integrin family and an additional domain related to von Willebrand factor, EMBO J. 7, 1371-1378.
11. Oxvig, C., and Springer, T. A. (1998) Experimental support for a beta-propeller domain in integrin alpha-subunits and a calcium binding site on its lower surface, Proc. Natl. Acad. Sci. USA. 95, 4870-4875. (Pubitemid 28208517)
12. Lee, J. O., Bankston, L. A., Arnaout, M. A., and Liddington, R. C. (1995) Two conformations of the integrin A-domain (I-domain): A pathway for activation? Structure 3, 1333-1340. (Pubitemid 3012265)
13. Lee, J. O., Rieu, P., Arnaout, M. A., and Liddington, R. (1995) Crystal structure of the A domain from the alpha subunit of integrin CR3 (CD11b/CD18), Cell 80, 631-638.
14. Vorup-Jensen, T., Ostermeier, C., Shimaoka, M., Hommel, U., and Springer, T. A. (2003) Structure and allosteric regulation of the alpha X beta 2 integrin I domain, Proc. Natl. Acad. Sci. USA. 100, 1873-1878. (Pubitemid 36254541)
15. Nolte, M., Pepinsky, R. B., Venyaminov, S., Koteliansky, V., Gotwals, P. J., and Karpusas, M. (1999) Crystal structure of the alpha- 1beta1 integrin I-domain: Insights into integrin I-domain function, FEBS Lett. 452, 379-385. (Pubitemid 29301780)
16. Emsley, J., King, S. L., Bergelson, J. M., and Liddington, R. C. (1997) Crystal structure of the I domain from integrin alpha2beta1, J. Biol. Chem. 272, 28512-28517. (Pubitemid 27517800)
17. Qu, A., and Leahy, D. J. (1995) Crystal structure of the I-domain from the CD11a/CD18 (LFA-1, alpha L beta 2) integrin, Proc. Natl. Acad. Sci. USA. 92, 10277-10281.
18. Shimaoka, M., Takagi, J., and Springer, T. A. (2002) Conformational regulation of integrin structure and function, Annu. Rev. Biophys. Biomol. Struct. 31, 485-516. (Pubitemid 34666842)
19. Li, R., Rieu, P., Griffith, D. L., Scott, D., and Arnaout, M. A. (1998) Two functional states of the CD11b A-domain: Correlations with key features of two Mn2+-complexed crystal structures, J. Cell. Biol. 143, 1523-1534. (Pubitemid 29006500)
20. Shimaoka, M., Lu, C., Palframan, R. T., von Andrian, U. H., McCormack, A., Takagi, J., and Springer, T. A. (2001) Reversibly locking a protein fold in an active conformation with a disulfide bond: Integrin alphaL I domains with high affinity and antagonist activity in vivo, Proc. Natl. Acad. Sci. USA. 98, 6009-6014. (Pubitemid 32488184)
21. Shimaoka, M., Xiao, T., Liu, J. H., Yang, Y., Dong, Y., Jun, C. D., McCormack, A., Zhang, R., Joachimiak, A., Takagi, J., Wang, J. H., and Springer, T. A. (2003) Structures of the alpha L I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation, Cell 112, 99-111. (Pubitemid 36106422)
22. Xiong, J. P., Li, R., Essafi, M., Stehle, T., and Arnaout, M. A. (2000) An isoleucine-based allosteric switch controls affinity and shape shifting in integrin CD11b A-domain, J. Biol. Chem. 275, 38762-38767. (Pubitemid 32009211)
23. Jin, M., Song, G., Carman, C. V., Kim, Y. S., Astrof, N. S., Shimaoka, M., Wittrup, D. K., and Springer, T. A. (2006) Directed evolution to probe protein allostery and integrin I domains of 200,000-fold higher affinity, Proc. Natl. Acad. Sci. USA. 103, 5758-5763.
24. Vorup-Jensen, T., Waldron, T. T., Astrof, N., Shimaoka, M., and Springer, T. A. (2007) The connection between metal ion affinity and ligand affinity in integrin I domains, Biochim. Biophys. Acta. 1774, 1148-1155. (Pubitemid 47333252)
25. Vorup-Jensen, T., Carman, C. V., Shimaoka, M., Schuck, P., Svitel, J., and Springer, T. A. (2005) Exposure of acidic residues as a danger signal for recognition of fibrinogen and other macromolecules by integrin alphaXbeta2, Proc. Natl. Acad. Sci. USA. 102, 1614-1619. (Pubitemid 40209216)
26. Vorup-Jensen, T., Chi, L., Gjelstrup, L. C., Jensen, U. B., Jewett, C. A., Xie, C., Shimaoka, M., Linhardt, R. J., and Springer, T. A. (2007) Binding between the integrin alphaXbeta2 (CD11c/CD18) and heparin, J. Biol. Chem. 282, 30869-30877. (Pubitemid 350035199)
27. Svitel, J., Boukari, H., Van Ryk, D., Willson, R. C., and Schuck, P. (2007) Probing the functional heterogeneity of surface binding sites by analysis of experimental binding traces and the effect of mass transport limitation, Biophys J. 92, 1742-1758. (Pubitemid 46393485)
28. Svitel, J., Balbo, A., Mariuzza, R. A., Gonzales, N. R., and Schuck, P. (2003) Combined affinity and rate constant distributions of ligand populations from experimental surface binding kinetics and equilibria, Biophys J. 84, 4062-4077. (Pubitemid 36637898)
29. O'Shannessy, D. J., and Winzor, D. J. (1996) Interpretation of deviations from pseudo-firstorder kinetic behavior in the characterization of ligand binding by biosensor technology, Anal. Biochem. 236, 275-283. (Pubitemid 26136106)
30. Lipschultz, C. A., Li, Y., and Smith-Gill, S. (2000) Experimental design for analysis of complex kinetics using surface plasmon resonance, Methods 20, 310-318. (Pubitemid 32905165)
31. Collins, A. V., Brodie, D. W., Gilbert, R. J., Iaboni, A., Manso-Sancho, R., Walse, B., Stuart, D. I., van der Merwe, P. A., and Davis, S. J. (2002) The interaction properties of costimulatory molecules revisited, Immunity 17, 201-210. (Pubitemid 35245962)
32. Sundberg, E. J., Andersen, P. S., Gorshkova, I. I., and Schuck, P. (2007) Surface Plasmon Resonance Biosensing in the Study of Ternary Systems of Interacting Proteins, in Protein Interactions (Schuck, P., Ed.), pp 97-141, Springer US, New York.
33. Schasfoort, R. B. M., and Schuck, P. (2008) Future Trends in SPR Technology, in Handbook of Surface Plasmon Resonance (Schasfoort, R. B. M., and Tudos, A. J., Eds.), pp 354-392, RSC Publishing, Cambridge.
34. Stapulionis, R., Oliveira, C. L., Gjelstrup, M. C., Pedersen, J. S., Hokland, M. E., Hoffmann, S. V., Poulsen, K., Jacobsen, C., and Vorup- Jensen, T. (2008) Structural insight into the function of myelin basic protein as a ligand for integrin alpha M beta 2, J. Immunol. 180, 3946-3956.
35. Davis, S. J., Ikemizu, S., Wild, M. K., and van der Merwe, P. A. (1998) CD2 and the nature of protein interactions mediating cell-cell recognition, Immunol. Rev. 163, 217-236. (Pubitemid 28327873)