Periodicity of monoisotopic mass isomers and isobars in proteomics

Analytical Chemistry

Volumn 83, Issue 20, 2011, Pages 8019-8023

  Yu, Long ^a   Xiong, Yan Mei ^b   Polfer, Nick C ^a  

^a University of Florida   (United States)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURATE MASS; AMINO ACID BUILDING BLOCKS; AMINO ACID RESIDUES; ELECTRON CAPTURE; FRAGMENT IONS; HIGHER-DEGREE; MASS ACCURACY; MASS DIFFERENCE; MONOISOTOPIC MASS; PERIODIC OSCILLATION; PROTEOMICS;

AMINO ACIDS; ATMOSPHERIC PRESSURE; MOLECULAR BIOLOGY; PEPTIDES; PHOSPHORYLATION;

ISOMERS;

AMINO ACID; PEPTIDE;

ARTICLE; CHEMISTRY; ISOMERISM; MASS SPECTROMETRY; MOLECULAR WEIGHT; PROTEOMICS;

AMINO ACIDS; ISOMERISM; MASS SPECTROMETRY; MOLECULAR WEIGHT; PEPTIDES; PROTEOMICS;

EID: 80054678102     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac201624t     Document Type: Article

References (25)

1. He, F.; Hendrickson, C. L.; Marshall, A. G. Anal. Chem. 2001, 73, 647-650
2. Marshall, A. G. Int. J. Mass Spectrom. 2000, 200, 331-356
3. Marshall, A. G.; Hendrickson, C. L.; Emmett, M. R.; Rodgers, R. P.; Blakney, G. T.; Nilsson, C. L. Eur. J. Mass Spectrom. 2007, 13, 57-59
4. Schaub, T. M.; Hendrickson, C. L.; Horning, S.; Quinn, J. F.; Senko, M. W.; Marshall, A. G. Anal. Chem. 2008, 80, 3985-3990
5. Zhang, L.-K.; Rempel, D. L.; Pramanik, B. N.; Gross, M. L. Mass Spectrom. Rev. 2005, 24, 286-309
6. Makarov, A. Mass spectrometer. U.S. Patent 5, 886, 346, 1999.
7. Hu, Q.; Noll, R. J.; Li, H.; Makarov, A.; Hardmanc, M.; Cooks, R. G. J. Mass Spectrom. 2005, 40, 430-443
8. Olsen, J. V.; de Godoy, L.; Li, G.; Macek, B.; Mortensen, P.; Pesch, R.; Makarov, A.; Lange, O.; Horning, S.; Mann, M. Mol. Cell. Proteomics 2005, 4, 2010-2021
9. Marshall, A. G.; Rodgers, R. P. Acc. Chem. Res. 2004, 37, 53-59
10. Yates, J. R. I. Trends Genet. 2000, 16, 5-8
11. Aebersold, R.; Goodlett, D. R. Chem. Rev. 2001, 101, 269-295
12. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207
13. Meng, F.; Cargile, B. J.; Miller, L. M.; Forbes, A. J.; Johnson, J. R.; Kelleher, N. L. Nat. Biotechnol. 2001, 19, 952-957
14. Bogdanov, B.; Smith, R. D. Mass Spectrom. Rev. 2005, 24, 168-200
15. Shen, Y. F.; Tolic, N.; Hixson, K. K.; Purvine, S. O.; Pasa-Tolic, L.; Qian, W. J.; Adkins, J. N.; Moore, R. J.; Smith, R. D. Anal. Chem. 2008, 80, 1871-1882
16. Schenk, S.; Schoenhals, G. S.; de Souza, G.; Mann, M. BMC Med. Genomics 2008, 1, 41
17. Scherl, A.; Shaffer, S. A.; Taylor, G. K.; Hernandez, P.; Appel, R. D.; Binz, P. A.; Goodlett, D. R. J. Am. Soc. Mass Spectrom. 2008, 19, 891-901
18. Mann, M. J. Protein Chem. 1994, 13, 506-507
19. Zubarev, R. A.; Hakansson, P.; Sundqvist, B. Anal. Chem. 1996, 68, 4060-4063
20. Takach, E. J.; Hines, W. M.; Patterson, D. H.; Juhasz, P.; Falick, A. M.; Vestal, M. L.; Martin, S. A. J. Protein Chem. 1997, 16, 363-369
21. He, F.; Emmett, M. R.; Hakansson, K.; Hendrickson, C. L.; Marshall, A. G. J. Proteome Res. 2004, 3, 61-67
22. Clauser, K. R.; Baker, P.; Burlingame, A. L. Anal. Chem. 1999, 71, 2871-2882
23. Berndt, P.; Hobohm, U.; Langen, H. Electrophoresis 1999, 20, 3521-3526
24. Conrads, T. P.; Anderson, G. A.; Veenstra, T. D.; Pasa-Tolic, L.; Smith, R. D. Anal. Chem. 2000, 72, 3349-3354
25. Mao, Y.; Tipton, J. D.; Blakney, G. T.; Hendrickson, C. L.; Marshall, A. G. 57th American Society for Mass Spectrometry Annual Conference on Mass Spectrometry & Allied Topics, Philadelphia, PA, May 31-June 4, 2009.