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Volumn 100, Issue 4, 2011, Pages 579-587

Phylogeny of members of the Frankia genus based on gyrB, nifH and glnII sequences

Author keywords

Actinorhizal plants; Frankia; glnII; gyrB; nifH; Phylogeny

Indexed keywords

ARTICLE; BACTERIAL GENE; BETULACEAE; CASUARINACEAE; CEANOTHUS; CLUSTER ANALYSIS; CONTROLLED STUDY; CORIARIACEAE; DATISCACEAE; ELAEAGNACEAE; FRANKIA; GENE IDENTIFICATION; GENE SEQUENCE; GLUTAMINE SYNTHETASE II GENE; GYRASE B GENE; HIGHER PLANT; INDEL MUTATION; MAXIMUM LIKELIHOOD METHOD; MOLECULAR PHYLOGENY; MYRICACEAE; NEIGHBOR JOINING METHOD; NITROGENASE REDUCTASE GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; PRIORITY JOURNAL; RHAMNACEAE; ROSACEAE; SEQUENCE ANALYSIS; SPECIES DIVERSITY;

EID: 80054123858     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9613-y     Document Type: Article
Times cited : (51)

References (23)
  • 1
    • 0026785735 scopus 로고
    • Grouping of Frankia strains on the basis of DNA relatedness
    • 1:CAS:528:DyaK3sXlsFOguw%3D%3D
    • VN Akimov SV Dobritsa 1992 Grouping of Frankia strains on the basis of DNA relatedness Syst Appl Microbiol 15 372 379 1:CAS:528:DyaK3sXlsFOguw%3D%3D
    • (1992) Syst Appl Microbiol , vol.15 , pp. 372-379
    • Akimov, V.N.1    Dobritsa, S.V.2
  • 2
    • 0027191394 scopus 로고
    • Biology of Frankia strains, actinomycete symbionts of actinorhizal plants
    • DR Benson WB Silvester 1993 Biology of Frankia strains, actinomycete symbionts of actinorhizal plants Microbiol Rev 57 293 319 8336669 1:CAS:528:DyaK3sXlslOitb4%3D (Pubitemid 23170094)
    • (1993) Microbiological Reviews , vol.57 , Issue.2 , pp. 293-319
    • Benson, D.R.1    Silvester, W.B.2
  • 3
    • 1642506138 scopus 로고    scopus 로고
    • Assessing the phylogeny of Frankia-actinorhizal plant nitrogen-fixing root nodule symbioses with Frankia 16S rRNA and glutamine synthetase gene sequences
    • DOI 10.1016/j.ympev.2003.08.001
    • ML Clawson A Bourret DR Benson 2004 Assessing the phylogeny of Frankia-actinorhizal plant nitrogen-fixing root nodule symbioses with Frankia 16S rRNA and glutamate synthetase gene sequences Mol Phyl Evol 31 131 138 10.1016/j.ympev.2003.08.001 1:CAS:528:DC%2BD2cXhvFSks7s%3D (Pubitemid 38403326)
    • (2004) Molecular Phylogenetics and Evolution , vol.31 , Issue.1 , pp. 131-138
    • Clawson, M.L.1    Bourret, A.2    Benson, D.R.3
  • 4
    • 0001491263 scopus 로고
    • Characterization of a spontaneous thiostrepton-resistant Frankia alni infective isolate using PCR-RFLP of nif and glnII genes
    • 10.1016/0038-0717(94)90242-9
    • B Counoyer P Normand 1994 Characterization of a spontaneous thiostrepton-resistant Frankia alni infective isolate using PCR-RFLP of nif and glnII genes Soil Biol Biochem 26 553 559 10.1016/0038-0717(94)90242-9
    • (1994) Soil Biol Biochem , vol.26 , pp. 553-559
    • Counoyer, B.1    Normand, P.2
  • 5
    • 0032805278 scopus 로고    scopus 로고
    • Analysis of Frankia evolutionary radiation using glnII sequences
    • DOI 10.1016/S0378-1097(99)00284-0, PII S0378109799002840
    • B Cournoyer C Lavire 1999 Analysis of Frankia evolution radiation using glnII sequences FEMS Microbiol Lett 117 29 34 10.1111/j.1574-6968.1999.tb13709.x (Pubitemid 29327160)
    • (1999) FEMS Microbiology Letters , vol.177 , Issue.1 , pp. 29-34
    • Cournoyer, B.1    Lavire, C.2
  • 6
    • 0031755706 scopus 로고    scopus 로고
    • Grouping of Frankia strains on the basis of susceptibility to antibiotics, pigment production and host specificity
    • SV Dobritsa 1998 Grouping of Frankia strains on the basis of susceptibility to antibiotics, pigment production and host specificty Int J Syst Bacteriol 48 1265 1275 10.1099/00207713-48-4-1265 1:CAS:528:DyaK1cXns12rtLw%3D (Pubitemid 28523339)
    • (1998) International Journal of Systematic Bacteriology , vol.48 , Issue.4 , pp. 1265-1275
    • Dobritsa, S.V.1
  • 8
    • 77958030333 scopus 로고    scopus 로고
    • 16S-23S rRNA intergenic spacer region variability in the genus Frankia
    • 10.1007/s00248-010-9641-6
    • F Ghodhbane-Gtari I Nouioui M Chaïer A Boudabous M Gtari 2010 16S-23S rRNA intergenic spacer region variability in the genus Frankia Microbiol Ecol 60 486 495 10.1007/s00248-010-9641-6
    • (2010) Microbiol Ecol , vol.60 , pp. 486-495
    • Ghodhbane-Gtari, F.1    Nouioui, I.2    Chaïer, M.3    Boudabous, A.4    Gtari, M.5
  • 9
    • 0002731802 scopus 로고
    • First report on isolation and culture of effective Casuarina-compatible strains of Frankia from Egypt
    • El-Lakany MH, Turnbull JW, Bewbaker TL (Eds.) Desert Development Center, AUC, Cairo
    • Girgis ZGM, Ishac ZY, El-Haddad M, Saleh AE, Diem HG, Dommergues RY (1990) First report on isolation and culture of effective Casuarina-compatible strains of Frankia from Egypt. In: El-Lakany MH, Turnbull JW, Bewbaker TL (Eds.) Advances in Casuarina research and utilisation. Desert Development Center, AUC, Cairo, pp 156-164
    • (1990) Advances in Casuarina Research and Utilization , pp. 156-164
    • Zgm, G.1    Ishac, Z.Y.2    El-Haddad, M.3    Saleh, A.E.4    Diem, H.G.5    Dommergues, R.Y.6
  • 10
    • 2342572774 scopus 로고    scopus 로고
    • Isolation of Elaeagnus-compatible Frankia from soils collected in Tunisia
    • DOI 10.1016/j.femsle.2004.04.001, PII S0378109704002472
    • M Gtari L Brusetti S Gharbi M Diego A Boudabous D Daffonchio 2004 Isolation of Elaeagnus-compatible Frankia from soils collected in Tunisia FEMS Microbiol Lett 234 349 355 15135543 10.1111/j.1574-6968.2004.tb09554.x 1:CAS:528:DC%2BD2cXjvVGmu7o%3D (Pubitemid 38595653)
    • (2004) FEMS Microbiology Letters , vol.234 , Issue.2 , pp. 349-355
    • Gtari, M.1    Brusetti, L.2    Skander, G.3    Mora, D.4    Boudabous, A.5    Daffonchio, D.6
  • 11
    • 33750962745 scopus 로고    scopus 로고
    • Genetic diversity among Elaeagnus compatible Frankia strains and sympatric-related nitrogen-fixing actinobacteria revealed by nifH sequence analysis
    • DOI 10.1016/j.soilbio.2006.07.005, PII S0038071706003208
    • M Gtari L Brusetti A Hassen D Mora D Daffonchio A Boudabous 2007 Genetic diversity among Elaeagnus compatible Frankia strains and sympatric related nitrogen-fixing actinobacteria revealed by nifH sequence analysis Soil Biol Biochem 39 372 377 10.1016/j.soilbio.2006.07.005 1:CAS:528:DC%2BD28Xht1agtr3J (Pubitemid 44738908)
    • (2007) Soil Biology and Biochemistry , vol.39 , Issue.1 , pp. 372-377
    • Gtari, M.1    Brusetti, L.2    Hassen, A.3    Mora, D.4    Daffonchio, D.5    Boudabous, A.6
  • 13
    • 0033258297 scopus 로고    scopus 로고
    • Molecular Phylogenies of Plants and Frankia Support Multiple Origins of Actinorhizal Symbioses
    • DOI 10.1006/mpev.1999.0692, PII S1055790399906929
    • SC Jeong NJ Ritchie DD Myrold 1999 Molecular phylogenies of plant and Frankia support multiple origins of actinorhizal symbioses Mol Phyl Evol 13 493 502 10.1006/mpev.1999.0692 1:CAS:528:DC%2BD3cXosFSi (Pubitemid 129499356)
    • (1999) Molecular Phylogenetics and Evolution , vol.13 , Issue.3 , pp. 493-503
    • Jeong, S.C.1    Ritchie, N.J.2    Myrold, D.D.3
  • 14
    • 0001782681 scopus 로고
    • Advances in the taxonomy of Frankia: Recognition of species alni and elaeagni and novel subspecies pommerii and van dijkii
    • H. Bothe F.J. de Bruijn W.E. Newton (eds). Gustav Fischer Verlag New York
    • Lalonde M, Simon L, Bousquet J, Siguin A (1988) Advances in the taxonomy of Frankia: recognition of species alni and elaeagni and novel subspecies pommerii and van dijkii. In: Bothe H, de Bruijn FJ, Newton WE (eds) Nitrogen fixation: hundred years after. Gustav Fischer Verlag, New York, pp 671-680
    • (1988) Nitrogen Fixation: Hundred Years after , pp. 671-680
    • Lalonde, M.1    Simon, L.2    Bousquet, J.3    Siguin, A.4
  • 15
    • 0032855518 scopus 로고    scopus 로고
    • Gene transfer, speciation, and the evolution of bacterial genomes
    • DOI 10.1016/S1369-5274(99)00010-7
    • Lawrence JG (1999) Gene transfer, speciation, and the evolution of bacterial genomes. Curr Opin Microbiol 2:519-523 (Pubitemid 29477180)
    • (1999) Current Opinion in Microbiology , vol.2 , Issue.5 , pp. 519-523
    • Lawrence, J.G.1
  • 16
    • 65549114090 scopus 로고    scopus 로고
    • The interplay of homologous recombination and horizontal gene transfer in bacterial speciation
    • Lawrence JG, Retchless AC (2009) The interplay of homologous recombination and horizontal gene transfer in bacterial speciation. Methods Mol Biol 532:29-53
    • (2009) Methods Mol Biol , vol.532 , pp. 29-53
    • Lawrence, J.G.1    Retchless, A.C.2
  • 18
    • 0030458988 scopus 로고    scopus 로고
    • PCR-RFLP and total DNA homology revealed three related genomic species among broad-host-range Frankia strains
    • DOI 10.1016/S0168-6496(96)00066-9, PII S0168649696000669
    • E Lumini M Bosco MP Fernandez 1996 PCR-RFLP and total DNA homology revealed three related genomic species among broad-host-range Frankia strains FEMS Microbiol Ecol 21 303 311 10.1111/j.1574-6941.1996.tb00127.x 1:CAS:528:DyaK28Xnt1Kqtro%3D (Pubitemid 26422773)
    • (1996) FEMS Microbiology Ecology , vol.21 , Issue.4 , pp. 303-311
    • Lumini, E.1    Bosco, M.2    Fernandez, M.P.3
  • 19
    • 0024065404 scopus 로고
    • Conservation of nif sequences in Frankia
    • 3185502 10.1007/BF00339587 1:CAS:528:DyaL1MXhvVKrtb4%3D
    • P Normand P Simonet R Bardin 1988 Conservation of nif sequences in Frankia Mol Gen Genet 213 238 246 3185502 10.1007/BF00339587 1:CAS:528:DyaL1MXhvVKrtb4%3D
    • (1988) Mol Gen Genet , vol.213 , pp. 238-246
    • Normand, P.1    Simonet, P.2    Bardin, R.3
  • 21
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelyhood, evolutionary distance, and maximum parsimony methods
    • doi: 10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kamur S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelyhood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi: 10.1093/molbev/msr121
    • (2011) Mol Biol Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kamur, S.6
  • 22
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 876 4882 10.1093/nar/25.24.4876 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.