Nocardiopsis yanglingensis sp. nov., a thermophilic strain isolated from a compost of button mushrooms

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 100, Issue 3, 2011, Pages 415-419

  Yan, Xia ^a   Yan, Hua ^a   Liu, Zenan ^a   Liu, Xiaodong ^a   Mo, Haiping ^a   Zhang, Liping ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

16S rRNA gene sequence; Chemotaxonomy; N. yanglingensis sp. nov.; Nocardiopsis; Polyphasic taxonomy

Indexed keywords

BACTERIAL RNA; RNA 16S;

ACTINOMYCETALES; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BUTTON MUSHROOM; COMPOST; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; MUSHROOM; NEW SPECIES; NOCARDIOPSIS ALBA; NOCARDIOPSIS FLAVESCENS; NOCARDIOPSIS METALLICUS; NOCARDIOPSIS YANGLINGENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; THERMOPHILIC BACTERIUM; TYPE STRAIN;

ACTINOMYCETALES; AGARICUS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HOT TEMPERATURE; MOLECULAR SEQUENCE DATA; PHYLOGENY; SOIL MICROBIOLOGY;

AGARICUS BISPORUS; NOCARDIOPSIS; NOCARDIOPSIS ALBA; NOCARDIOPSIS METALLICUS; NOCARDIOPSIS PRASINA;

EID: 80054117495     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9597-7     Document Type: Article

References (36)

1. JR Borgmeyer DL Crawford 1985 Production and characterization of polymeric lignin degradation intermediates from two different Streptomyces sp Appl Environ Microbiol 49 273 278 16346714 1:CAS:528:DyaL2MXht1ymsb0%3D (Pubitemid 15136451)
2. Collins MD (1985) Isoprenoid quinone analysis in classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 267-287
3. MD Collins T Pirouz M Goodfellow DE Minnikin 1977 Distribution of menaquinones in actinomycetes and corynebacteria J Gen Microbiol 100 221 230 894261 1:CAS:528:DyaE2sXlsVygtb4%3D (Pubitemid 8122111)
4. J De Ley H Cattoir A Reynaerts 1970 The quantitative measurement of DNA hybridization from renaturation rates Eur J Biochem 12 133 142 4984993 10.1111/j.1432-1033.1970.tb00830.x 1:CAS:528:DyaE3cXnsVOgtg%3D%3D
5. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
6. WM Fitch 1971 Toward defining the course of evolution: minimum change for a specific tree topology Syst Zool 20 406 416 10.2307/2412116
7. E Grund RM Kroppenstedt 1990 Chemotaxonomy and numerical taxonomy of the genus Nocardiopsis Meyer 1976 Int J Syst Bacteriol 40 5 11 10.1099/00207713-40- 1-5 (Pubitemid 20023659)
8. P Kämpfer RM Kroppenstedt 1996 Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa Can J Microbiol 42 989 1005 10.1139/m96-128 (Pubitemid 26380214)
9. IK Kapdan F Kargi 2006 Bio-hydrogen production from waste materials Enzyme Microb Technol 38 569 582 10.1016/j.enzmictec.2005.09.015 1:CAS:528:DC%2BD28XmsVOhtw%3D%3D (Pubitemid 43115176)
10. Kelly KL (1964) Inter-Society Color Council-National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. US Government Printing Office, Washington, DC
11. M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Mol Evol 16 111 120 7463489 10.1007/BF01731581 1:CAS:528:DyaL3MXmtFSktg%3D%3D (Pubitemid 11166431)
12. RM Kroppenstedt 1985 Fatty acid and menaquinone analysis of actinomycetes and related organisms Soc Appl Bacteriol Tech Ser 20 173 197 1:CAS:528:DyaL2MXltlyjsL4%3D
13. N Kumar D Das 2001 Continuous hydrogen production by immobilized Enterobacter cloacae IIT-BT 08 using lignocellulosic materials as solid matrices Enzyme Microb Technol 29 280 287 10.1016/S0141-0229(01)00394-5 1:CAS:528:DC%2BD3MXmt1Kltbc%3D (Pubitemid 32781750)
14. S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163 15260895 10.1093/bib/5.2.150 1:CAS:528:DC%2BD2cXntFGqu7s%3D
15. Lechevalier HG, Lechevalier MP (1970a) A critical evaluation of the genera of aerobic actinomycetes. In: Prauser H (ed) The Actinomycetales. Gustav Fischer, Jena, pp 393-405
16. MP Lechevalier HA Lechevalier 1970 Chemical composition as a criterion in the classification of aerobic actinomycetes Int J Syst Bacteriol 20 435 443 10.1099/00207713-20-4-435 1:CAS:528:DyaE3sXltFaqur0%3D
17. Lechevalier HA, Lechevalier MP (1980) The chemotaxonomy of actinomycetes. In: Dietz A, Thayer DW (eds) Actinomycete Taxonomy (Special Publication 6). Society of Industrial Biology, Arlington, pp 277-284
18. MP Lechevalier BC De HA Lechevalier 1977 Chemotaxonomy of aerobic actinomycetes: phospholipid composition Biochem Syst Ecol 5 249 260 10.1016/0305-1978(77)90021-7 1:CAS:528:DyaE1cXhtleitLY%3D
19. MP Lechevalier AE Stern HA Lechevalier 1981 Phospholipids in the taxonomy of actinomycetes Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt 1 111 116
20. J Marmur P Doty 1962 Determination of base composition of deoxyribonucleic acid from its thermal denaturation temperature J Mol Biol 5 109 118 14470099 10.1016/S0022-2836(62)80066-7 1:STN:280:DyaF38%2FntFGlsA%3D%3D
21. S Masuda K Endo N Koizumi, et al. 2006 Molecular identification of a novel β-1, 3-glucanase from alkaliphilic Nocardiopsis sp. strain F96 Extremophiles 10 251 255 16601914 10.1007/s00792-006-0514-3 1:CAS:528: DC%2BD28XmsFCju7Y%3D (Pubitemid 44000103)
22. J Meyer 1976 Nocardiopsis, a new genus of the order Actinomycetales Int J Syst Bacteriol 26 487 493 10.1099/00207713-26-4-487
23. KA Moreira BF Albuquerque MFS Teixeira ALF Porto JLF Lima 2002 Application of protease from Nocardiopsis sp. as a laundry detergent additive World J Microbiol Biotechnol 18 309 315 10.1023/A:1015221327263
24. ZB Ögel K Yarangümeli H Dündar I Ifrij 2001 Submerged cultivation of Scytalidium thermophilum on complex lignocellulosic biomass for endoglucanase production Enzyme Microb Technol 28 689 695 11339954 10.1016/S0141-0229(01)00315-5 (Pubitemid 32411595)
25. FA Rainey N Ward-Rainey RM Kroppenstedt E Stackebrandt 1996 The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46 1088 1092 8863440 10.1099/00207713-46-4-1088 1:STN:280: DyaK2s%2Fhs1yitg%3D%3D (Pubitemid 26339237)
26. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
27. EB Shirling D Gottlieb 1966 Methods for characterization of Streptomyces species Int J Syst Bacteriol 16 313 340 10.1099/00207713-16-3-313
28. RK Sukumaran RR Singhania GM Mathew A Pandey 2009 Cellulase production using biomass feed stock and its application in ligno-cellulose saccharification for bio-ethanol production Renew Energ 34 421 424 10.1016/j.renene.2008.05.008 1:CAS:528:DC%2BD1cXht1Okt7nP
29. M Sumiko E Kimiko K Naoya H Tokusuke F Tetsuya, et al. 2006 Molecular identification of a novel β-1, 3-glucanase from alkaliphilic Nocardiopsis sp. strain F96 Extremophiles 10 251 255 10.1007/s00792-006-0514-3 (Pubitemid 44000103)
30. Y Sun JY Cheng 2002 Hydrolysis of lignocellulosic materials for ethanol production: a review Bioresour Technol 83 1 11 12058826 10.1016/S0960-8524(01) 00212-7 1:CAS:528:DC%2BD38Xptleluw%3D%3D (Pubitemid 34126398)
31. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 9396791 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
32. PY Van RD Wachter 1994 TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment Comput Appl Biosci 10 569 570
33. D Walker P Ledesma OD Delgado JD Breccia 2006 High endo-β-1, 4-d-glucanase activity in a broad pH range from the alkali-tolerant Nocardiopsis. sp. SES28 World J Microbiol Biotechnol 22 761 764 10.1007/s11274-005-9097-x 1:CAS:528:DC%2BD28XmsVWqsLw%3D (Pubitemid 43999864)
34. LG Wayne DJ Brenner RR Colwell PAD Grimont O Kandler MI Krichevsky LH Moore WEC Moore RGE Murray, et al. 1987 International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics Int J Syst Bacteriol 37 463 464 10.1099/00207713-37-4-463
35. Y Yongqi Z Suqin 1999 Studies on the cellulose producer Trichoderma viride T299 Chin J Appl Environ Biol 5 Suppl 200 203
36. JW Zhang RY Zhang 2008 Purification and characterization of a cold-adapted α-amylase produced by Nocardiopsis sp. 7326 isolated from Prydz Bay, Antarctic Mar Biotechnol 10 75 82 17934774 10.1007/s10126-007-9035-z (Pubitemid 351207790)