Microsatellite DNA reveals population genetic differentiation among sprat (Sprattus sprattus) sampled throughout the Northeast Atlantic, including Norwegian fjords

ICES Journal of Marine Science

Volumn 68, Issue 10, 2011, Pages 2145-2151

  Glover, Kevin A ^a   Skaala, Øystein ^a   Limborg, Morten ^b   Kvamme, Cecilie ^a   Torstensen, Else ^a  

^a INSTITUTE OF MARINE RESEARCH   (Norway)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

fishery genetics; management; North Sea; pelagic fish; population genetics

Indexed keywords

CLUPEOID; CONNECTIVITY; FJORD; GENETIC DIFFERENTIATION; GENETIC MARKER; MITOCHONDRIAL DNA; PELAGIC FISH; SAMPLING;

ARCTIC OCEAN; ATLANTIC OCEAN; ATLANTIC OCEAN (NORTHEAST); BALTIC SEA; CELTIC SEA; NORTH SEA; NORWEGIAN SEA;

SPRATTUS SPRATTUS;

EID: 80054095083     PISSN: 10543139     EISSN: 10959289     Source Type: Journal    
DOI: 10.1093/icesjms/fsr153     Document Type: Article

References (31)

1. Antao, T., Lopes, A., Lopes, R. J., Beja-Pereira, A., and Luikart, G. 2008. LOSITAN: A workbench to detect molecular adaptation based upon a Fst-outlier method. BMC Bioinformatics, 9: 323.
2. Bekkevold, D., André, C., Dahlgren, T. G., Clausen, L. A. W., Torstensen, E., Mosegaard, H., Carvalho, G. R., et al. 2005. Environmental correlates of population differentiation in Atlantic herring. Evolution, 59: 2656-2668.
3. Dailianis, T., Limborg, M., Hanel, R., Bekkevold, D., Lagnel, J., Magoulas, A., and Tsigenopoulos, C. S. 2008. Characterization of nine polymorphic microsatellite markers in sprat (Sprattus sprattus L.). Molecular Ecology Resources, 8: 861-863.
4. Dannevig, G., and Gundersen, K. R. 1954. Brislingens gyting. 1. Undersøkelser i Skagerakk og Ryfylke. Av Gunnar Dannevig. 2. Undersøkelser i Hordaland og Sogn Av Kaare R. Gundersen. Fiskeridirektoratets Smaskrifter, 3. 19 pp. (in Norwegian).
5. Debes, P. V., Zachos, F. E., and Hanel, R. 2008. Mitochondrial phylogeography of the European sprat (Sprattus sprattus L., Clupeidae) reveals isolated climatically vulnerable populations in the Mediterranean Sea and range expansion in the Northeast Atlantic. Molecular Ecology, 17: 3873-3888.
6. Dieringer, D., and Schlotterer, C. 2003. Microsatellite analyser (MSA): A platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3: 167-169.
7. Falush, D., Stephens, M., and Pritchard, J. K. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 164: 1567-1587.
8. Glover, K. A., Hansen, M. M., Lien, S., Als, T. D., Høyheim, B., and Skaala, Ø. 2010. A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment. Genetics, 11: 2. doi: 10.1186/1471-2156-11-2
9. Goudet, J. 1995. FSTAT (Version 1.2): A computer program to calculate F-statistics. Journal of Heredity, 86: 485-486.
10. ICES. 2009. Report of the Benchmark Workshop on Short-lived Species (WKSHORT). 31 August-4 September 2009, Bergen, Norway. ICES Document CM 2009/ACOM: 34. 166 pp.
11. ICES. 2011. Report of the Herring Assessment Working Group for the Area South of 628N (HAWG), 16-24 March 2011, ICES Headquarters, Copenhagen. ICES Document CM 2011/ACOM: 06.
12. Imsland, A. K., Foss, A., Stafansson, S. O., and Nævdal, G. 2000. Hemoglobin genotypes of turbot (Scophthalamus maximus): Consequences for growth and variation in optimal temperature for growth. Fish Physiology and Biochemistry, 23: 75-81.
13. Jørgensen, H. B. H., Hansen, M. M., Bekkevold, D., Ruzzante, D. E., and Loeschcke, V. 2005. Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea. Molecular Ecology, 14: 3219-3234.
14. Jørstad, K. E., Karlsen, O., Svasand, T., and Ottera, H. 2006. Comparison of growth rate among different protein genotypes in Atlantic cod, Gadus morhua, under farming conditions. ICES Journal of Marine Science, 63: 235-245.
15. Jørstad, K. E., and Nævdal, G. 1981. Enzyme polymorphism of sprat from Norwegian waters - preliminary results. ICES Document CM 1981/H: 65. 9 pp.
16. Knutsen, H., André, C., Jorde, P. E., Skogen, M. D., Thuróczy, E., and Stenseth, N. Ch. 2004. Transport of North Sea cod larvae into the Skagerrak coastal populations. Proceedings of the Royal Society of London, Series B, 271: 1337-1344.
17. Knutsen, H., Jorde, P. E., André, C., and Stenseth, N. Ch. 2003. Fine-scaled geographical population structuring in a highly mobile marine species: The Atlantic cod. Molecular Ecology, 12: 385-394.
18. Knutsen, H., Olsen, E. M., Jorde, P. E., Espeland, S. H., André, C., and Stenseth, N. Ch. 2011. Are low but statistically significant levels of genetic differentiation in marine fishes "biologically meaningful"? A case study of coastal Atlantic cod. Molecular Ecology, 20: 768-783.
19. Limborg, M. T., Pedersen, J. S., Hemmer-Hansen, J., Tomkiewicz, J., and Bekkevold, D. 2009. Genetic population structure of European sprat Sprattus sprattus: Differentiation across a steep environmental gradient in a small pelagic fish. Marine Ecology Progress Series, 379: 213-224.
20. Nævdal, G. 1968. Studies on haemoglobins and serum proteins in sprat from Norwegian waters. Fiskeridirektoratets Skrifter, Serie Havundersøkelser, 14: 160-182.
21. Neilson, E. E., Hansen, M. M., and Meldrup, D. 2006. Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): Implications for inferring population structure in nonmodel organisms. Molecular Ecology, 15: 3219-3229.
22. Nielsen, E. E.,Wright, P. J., Hemmer-Hansen, J., Poulsen, N. A., Gibb, I. M., and Meldrup, D. 2009. Microgeographical population structure of cod Gadus morhua in the North Sea and west of Scotland: The role of sampling loci and individuals. Marine Ecology Progress Series, 376: 213-225.
23. Pampoulie, C., Ruzzante, D. E., Chosson, V., Jörunsdóttir, D. D., Taylor, L., Torsteinsson, V., Daníelsdóttir, A. K., et al. 2006. The genetic structure of Atlantic cod (Gadus morhua) around Iceland: The pan I locus and tagging experiments. Canadian Journal of Fisheries and Aquatic Sciences, 63: 2660-2674.
24. Pritchard, J. K., Stephens, M., and Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics, 155: 945-959.
25. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution, 43: 223-225.
26. Raymond, M., and Rousset, F. 1995. GENEPOP (Version 1.2) - Population-genetics software for exact tests and ecumenicism. Journal of Heredity, 86: 248-249.
27. Takezaki, N., Rzhetsky, A., and Nei, M. 1995. Phylogenetic test of the molecular clock and linearized trees. Molecular Biology and Evolution, 12: 823-833.
28. Tamura, K., Dudley, J., Nei, M., and Kumar, S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24: 1596-1599.
29. Torstensen, E. 1984. Sprat spawning in two fjord areas of western Norway in 1982 and 1983. ICES Document CM 1984/ H: 41. 16 pp.
30. Waples, R., Punt, A. E., and Cope, J. M. 2008. Integrating genetic data into management of marine resources: How can we do it better? Fish and Fisheries, 9: 423-449.
31. Zardoya, R., Castilho, R., Grande, C., Favre-Krey, L., Caetano, S., Marcato, S., Krey, G., et al. 2004. Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus), in the Mediterranean Sea. Molecular Ecology, 13: 1785-1798.