Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus), in the Mediterranean Sea

Molecular Ecology

Volumn 13, Issue 7, 2004, Pages 1785-1798

  Zardoya, R ^a   Castilho, R ^b,e   Grande, C ^a   Favre Krey, L ^c   Caetano, S ^b,f   Marcato, S ^d   Krey, G ^c   Patarnello, T ^d  

^a MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^b UNIVERSITY OF ALGARVE   (Portugal)

^c INSTITUTE OF TECHNOLOGY OF AGRICULTURAL PRODUCTS   (Greece)

^d UNIVERSITY OF PADOVA   (Italy)

^e CCMAR   (Italy)

^f BioCon ^*

Author keywords

Chub mackerel; Mackerel; Marine speciation; Mitochondrial control region; Population genetics; Scomber

Indexed keywords

MITOCHONDRIAL DNA; PRIMER DNA;

ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; MEDITERRANEAN SEA; PERCIFORMES; POPULATION DYNAMICS; POPULATION GENETICS; SPECIES DIFFERENCE;

ANALYSIS OF VARIANCE; ANIMALS; CLUSTER ANALYSIS; DNA PRIMERS; DNA, MITOCHONDRIAL; GENETICS, POPULATION; HAPLOTYPES; MEDITERRANEAN SEA; PERCIFORMES; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VARIATION (GENETICS);

LEUCISCUS CEPHALUS; RASTRELLIGER; SCOMBER; SCOMBER JAPONICUS; SCOMBER SCOMBRUS;

EID: 3042786626     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02198.x     Document Type: Article

References (69)

1. Andreu B, Rodríguez-Roda J (1953) Contribución a la biología de la caballa Scomber scombrus, del levante español. Publicaciones del Instituto de Biologìn Aplicada Barcelona, 12, 129-185.
2. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, MA.
3. Bahri-Sfar L, Lemaire C, Ben Hassine OK, Bonhomme F (2000) Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism. Proceedings of the Royal Society of London Series B - Biological Sciences, 267, 929-935.
4. Bargelloni L, Alarcon JA, Alvarez MC et al. (2003) Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean divide. Journal of Evolutionary Biology, 16, 1149-1158.
5. Beerli P, Felsenstein J (1999) Maximum likelihood estimation of migration, rates and effective population numbers in two populations using a coalescent approach. Genetics, 152, 763-773.
6. Beheregaray LB, Sunnucks P (2001) Fine-sclae genetic structure, estuarine colonization and incipient speciation in marine silverside fish Odontesthes argentinensis. Molecular Ecololgy, 10, 2849-2866.
7. Bembo DG, Carvalho GR, Cingolani N et al. (1996) Allozymic and morphometric evidence for two stocks of the European anchovy Engraulis encrasicolus in Adriatic waters. Marine Biology, 126, 529-538.
8. Bernardi G, Findley L, Rocha-Olivares A (2003) Vicariance and dispersal across Baja California in disjunct marine fish populations. Evolution, 57, 1599-1609.
9. Borsa P, Naciri M, Bahri L et al. (1997) Zoogéographie infra-spécifique de la mer Méditerranée; Analyse des données génétiques populationnelles sur seize espèces atlanto-méditerranéennes (Poissons et Invertébrés). Vie Milieu, 47, 295-305.
10. Chikhi L, Agnèse J-F, Bonhomme F (1997) Fortes différences des ADN mitochondriaux de populations de Sardinella aurita de la mer Méditerranée et de l'Atlantique Est. Comptes Rendus de L'Académie des Sciences, 320, 289-297.
11. Chow S, Okamoto H, Miyabe N, Hiramatsu K, Barut N (2000) Genetic divergence between Atlantic and Indo-Pacific stocks of big-eye tuna (Thunnus obesus) and admixture around South Africa. Molecular Ecology, 9, 221-227.
12. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
13. Cook RM, Sinclair A, Stefansson G (1997) Potential collapse of North Sea cod stocks. Nature, 385, 521-522.
14. Crosetti D, Nelson WS, Avise JC (1994) Pronounced genetic-structure of mitochondrial-DNA among populations of the circumglobally distributed gray mullet (Mugil cephalus). Journal of Fish Biology, 44, 47-58.
15. 1 Analysis as a Method of Stock Separation. ICES CM H, 24, 13pp.
16. Dupanloup I, Schneider S, Langaney A, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571-2581.
17. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular varuance inferred from metric distances among DNA haplo-types: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
18. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
19. Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
20. Guo S, Thompson E (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
21. Hunter JR, Kimbrell CA (1980) Early life history of Pacific mackerel, Scomber japonicus. Fish Bulletin, 78, 89-101.
22. Hutchings JA (2000) Collapse and recovery of marine fishes. Nature, 406, 882-885.
23. Hutchinson WF, Carvalho GR, Rogers SI (2001) Marked generic structuring in localised spawning populations of cod Gadus morhua in the North Sea and adjoining water, as revealed by microsatellites. Marine Ecology Progress Series, 223, 251-260.
24. Jones GP, Milicich MJ, Emslie MJ, Lunow C (1999) Self-recruitment in a coral reef fish population. Nature, 402, 802-804.
25. Knutsen H, Jorde PE, André C, Stenseth NC (2003) Fine-scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Molecular Ecology, 12, 385-394.
26. Kotoulas G, Magoulas A, Tsimenides N, Zouros E (1995) Marked mitochondrial DNA differences between Mediterranean and Atlantic populations of the swordfish, Xiphias gladius. Molecular Ecology, 4, 473-481.
27. Lissner H (1937) Zur biologie der makrele des Bosporus. Internationale Revue der Gesamtem Hydrobiologie, 36, 184-212.
28. Lockwood SJ (1988) The mackerel, its biology, assessment and the management of a fishery. Fishing News Books, Farnham, Surrey, UK.
29. Mackenzie K (1983) Parasites as biological tags in fish population studies. Advances in Applied Biology, 7, 251-331.
30. McMillan WO, Palumbi SR (1997) Rapid rate of control-region evolution in Pacific butterflyfishes (Chaetodontidae). Journal of Molecular Evolution, 45, 473-484.
31. McLean JE, Hay DE, Taylor EB (1999) Marine population structure in an anadromous fish: life-history influences patterns of mitochondrial DNA variation in the eulachon, Thaleichthys pacificus. Molecular Ecology, 8, S143-S148.
32. McQuinn IH (1997) Metapopulations and the Atlantic herring. Reviews in Fish Biology and Fisheries, 7, 297-329.
33. Metz G, Myers RA (1996) Influence of fecundity on recruitment variability of marine fish. Canadian Journal of Fisheries and Aquatic Sciences, 53, 1618-1625.
34. Miya M, Nishida M (1997) Speciation in the open ocean. Nature, 389, 803-804.
35. Naciri M, Lemaire C, Borsa P, Bonhomme F (1999) Genetic study of the Atlantic/Mediterranean transition in sea bass (Dicentrarchus labrax). The Journal of Heredity, 90, 591-596.
36. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
37. Nesbe CL, Rueness EK, Iversen SA, Skagen DW, Jakobsen KS (2000) Phylogeography and population history of Atlantic mackerel (Scomber scombrus L.): a genealogical approach reveals genetic structuring among the eastern. Atlantic Stocks. Proceedings of the Royal Society of London Series B, 267, 281-292.
38. Ostellari L, Bargelloni L, Penzo E, Patarnello P, Patarnello T (1996) Optimization of single-strand confromation polymorphism and equence analysis of the mitochondrial control region in Pagellus bogaraveo (Sparidae, Teleostei): rationalized tools in fish population biology. Animal Genetics, 27, 423-427.
39. Palumbi SR (1994) Genetic divergence, reproductive isolation, and marine speciation. Annual Review of Ecology and Systematics, 25, 547-572.
40. Peterson WT, Ausubel S (1984) Diets and selective feeding by larvae of Atlantic mackerel Scomber scombrus on zooplankton. Marine Ecology Progress Series, 17, 65-75.
41. Poulain P-M (2001) Adriatic Sea surface circulation as derived from drifter data between 1990 and 1999. Journal of Marine Systems, 29, 3-32.
42. Poulain P-M, Cushman-Roissin B (2000) Circulation. In: Oceanography of the Adriatic Sea (eds Cushman-Roissin B, Gacic M, Poulain P-M). Kluwer Academic Publishers, Dordrecht, Germany.
43. Prodanov K, Mikhailov K, Daskalov G et al. (1996) Environmental management of fish resourcs in the Black sea and their rational exploitation FAO, Rome.
44. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
45. Rocha-Olivares A, Rosenblatt RH, Vetter RD (1999) Cryptic species of Rockfishes (Sebastes: Scorpaenidae) in the Southern hemisphere inferred from mitochondrial lineages. The Journal of Heredity, 90, 404-411.
46. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
47. Roldan MI, Perrotta RG, Cortey M, Pla C (2000) Molecular and morphologic approaches to discrimination of variability patterns in chub mackerels, Scomber japonicus. Journal of Experimental Marine Biology and Ecology, 253, 63-74.
48. Rüber L, Van Tassell JL, Zardoya (2003) The influence of ecological specialization and biogeography on the evolutionary history of the American seven-spined gobies (Gobiidae, Gobiosomatini). Evolution, 57, 1584-1598.
49. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
50. Schneider S, Excoffier L (1999) Estimation of past demographic parameters from the distribution of pairwise distances when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics, 152, 1079-1089.
51. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN ver 2.000: a software for population genetics data analysis. Genetics and Biometry Laboratory. University of Geneva, Geneva.
52. Scoles DR, Collette BB, Graves JE (1998) Global phylogeography of mackerels of the genus Scomber. Fish Bulletin, 96, 823-842.
53. Shadwick RE, Katz SL, Korsmeyer KE, Knower T (1998) Muscle dynamicsin fish during steady swimming. American Zoologist, 38, 755-770.
54. Slatkin M, Hudson RR (1991) Pairwise Comparisons of Mitochondrial-DNA Sequences in Stable and Exponentially Growing Populations. Genetics, 129, 555-562.
55. Studholme AL, Packer DB, Berrien PL et al. (1999) Atlantic mackerel, Scomber Scombrus, Life History and Habitat Characteristics. NOAA Technical Memorandum NMFS-NE 141.
56. Swofford DL (1998) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0. Sinauer Associates, Inc, Sunderland, MA, US.
57. Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437-460.
58. Tajima F (1989) Statistical testing for the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
59. Tajima F (1993) Measurement of DNA polymorphism. In: Mechanisms of Molecular Evolution (eds Takahata N, Clark A), pp. 37-59. Sinauer Associates. Inc., Sunderland, MA.
60. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
61. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
62. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin J, Higgins DG (1997) The CLUSTAL-windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Reserach, 25, 4876-4882.
63. Tirard C, Berrebi P, Raibaut A, Frenaud F (1992) Parasites as biological markers - evolutionary relationships in the hetero-specific combination of Helminths (Monogeneans) and Teleosts (Gadidae). Biological Journal of the Linnean Society, 47, 173-182.
64. Utter FM (1991) Biochemical genetics and fishery management: an historical perspective. Journal of Fish Biology, 39, 1-20.
65. Ward RD, Woodmark M, Skibinski DOF (1994) A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. Journal of Fish Biology, 44, 213-232.
66. Wardle CS, Videler JJ (1993) The timing of the electromyogram in the lateral myotomes of mackerel and saithe at different swimming speeds. Journal of Fish Biology, 42, 347-359.
67. Watterson G (1975) On the number of segregating sites in genetical models without recombination. Theoretical Population Biology, 7, 256-276.
68. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
69. Wirth T, Bernatchez L (2001) Genetic evidence against panmixia in the European eel. Nature, 409, 1037-1040.