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Volumn 51, Issue 4, 2011, Pages 430-444

A Universal Method for the Identification of Bacteria Based on General PCR Primers

Author keywords

Bacterial identification; Golden mixture; Multiplex; Universal method; Universal primers

Indexed keywords

BACTERIA (MICROORGANISMS); NEMATODA; PROTISTA;

EID: 80054090412     PISSN: 00468991     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12088-011-0122-5     Document Type: Article
Times cited : (91)

References (48)
  • 1
    • 0031901796 scopus 로고    scopus 로고
    • Preventing antibiotic resistance through rapid genotypic identification of bacteria and of their antibiotic resistance genes in the clinical microbiology laboratory
    • Bergeron MG, Ouellette M (1998) Preventing antibiotic resistance through rapid genotypic identification of bacteria and of their antibiotic resistance genes in the clinical microbiology laboratory. J Clin Microbiol 36: 2169-2172.
    • (1998) J Clin Microbiol , vol.36 , pp. 2169-2172
    • Bergeron, M.G.1    Ouellette, M.2
  • 2
    • 0031909733 scopus 로고    scopus 로고
    • Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
    • Felske A, Wolterink A, van Lis R, Akkermans ADL (1998) Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl Envir Microbiol 64: 871-879.
    • (1998) Appl Envir Microbiol , vol.64 , pp. 871-879
    • Felske, A.1    Wolterink, A.2    van Lis, R.3    Akkermans, A.D.L.4
  • 4
    • 2942624056 scopus 로고    scopus 로고
    • Quantification of intestinal bacterial populations by real-time pcr with a universal primer set and minor groove binder probes: A global approach to the enteric flora
    • Ott SJ, Musfeldt M, Ullmann U, Hampe J, Schreiber S (2004) Quantification of intestinal bacterial populations by real-time pcr with a universal primer set and minor groove binder probes: a global approach to the enteric flora. J Clin Microbiol 422: 566-2572.
    • (2004) J Clin Microbiol , vol.422 , pp. 566-2572
    • Ott, S.J.1    Musfeldt, M.2    Ullmann, U.3    Hampe, J.4    Schreiber, S.5
  • 5
    • 0013503658 scopus 로고
    • Base composition of the deoxyribonucleic acid of sulfate-reducing bacteria
    • Sigal N, Senez JC, Le Gall J, Sebald M (1963) Base composition of the deoxyribonucleic acid of sulfate-reducing bacteria. J Bacteriol 85: 1315-1318.
    • (1963) J Bacteriol , vol.85 , pp. 1315-1318
    • Sigal, N.1    Senez, J.C.2    Le Gall, J.3    Sebald, M.4
  • 6
    • 0011839713 scopus 로고
    • Transformation of streptococci to streptomycin resistance
    • Perry D, Slade H (1961) Transformation of streptococci to streptomycin resistance. J Bacteriol 83: 443-449.
    • (1961) J Bacteriol , vol.83 , pp. 443-449
    • Perry, D.1    Slade, H.2
  • 7
    • 38949087234 scopus 로고    scopus 로고
    • Efficient identification of clinically relevant Candida yeast species by use of an assay combining panfungal loop-mediated isothermal DNA amplification with hybridization to species-specific oligonucleotide probes
    • Inácio J, Flores O, Martins IS (2008) Efficient identification of clinically relevant Candida yeast species by use of an assay combining panfungal loop-mediated isothermal DNA amplification with hybridization to species-specific oligonucleotide probes. J Clin Microbiol 46: 713-720.
    • (2008) J Clin Microbiol , vol.46 , pp. 713-720
    • Inácio, J.1    Flores, O.2    Martins, I.S.3
  • 8
    • 0034048776 scopus 로고    scopus 로고
    • Identification of Helicobacter pylori and Other Helicobacter Species by PCR, hybridization and partial DNA sequencing in human liver samples from patients with primary sclerosing cholangitis or primary biliary cirrhosis
    • Nilsson H, Taneera J, Castedal M, Glatz E, Olsson R, Wadström T (2000) Identification of Helicobacter pylori and Other Helicobacter Species by PCR, hybridization and partial DNA sequencing in human liver samples from patients with primary sclerosing cholangitis or primary biliary cirrhosis. J Clin Microbiol 38: 1072-1076.
    • (2000) J Clin Microbiol , vol.38 , pp. 1072-1076
    • Nilsson, H.1    Taneera, J.2    Castedal, M.3    Glatz, E.4    Olsson, R.5    Wadström, T.6
  • 9
    • 0032894947 scopus 로고    scopus 로고
    • Detection of unculturable bacteria in periodontal health and disease by PCR
    • Owen RH, Dymock D, Booth V, Weightman AJ, Wade WG (1999) Detection of unculturable bacteria in periodontal health and disease by PCR. J Clin Microbiol 37: 1469-1473.
    • (1999) J Clin Microbiol , vol.37 , pp. 1469-1473
    • Owen, R.H.1    Dymock, D.2    Booth, V.3    Weightman, A.J.4    Wade, W.G.5
  • 10
    • 8644265908 scopus 로고    scopus 로고
    • Detection of Campylobacter spp. in chicken fecal samples by real-time PCR
    • Lund M, Nordentoft S, Pedersen K, Madsen M (2004) Detection of Campylobacter spp. in chicken fecal samples by real-time PCR. J Clin Microbiol 42: 5125-5132.
    • (2004) J Clin Microbiol , vol.42 , pp. 5125-5132
    • Lund, M.1    Nordentoft, S.2    Pedersen, K.3    Madsen, M.4
  • 11
    • 10444290580 scopus 로고    scopus 로고
    • Genogroup I and II noroviruses detected in stool samples by real-time reverse transcription-PCR using highly degenerate universal primers
    • Richards GP, Watson MA, Fankhauser RL, Monroe SS (2004) Genogroup I and II noroviruses detected in stool samples by real-time reverse transcription-PCR using highly degenerate universal primers. Appl Envir Microbiol 70: 7179-7184.
    • (2004) Appl Envir Microbiol , vol.70 , pp. 7179-7184
    • Richards, G.P.1    Watson, M.A.2    Fankhauser, R.L.3    Monroe, S.S.4
  • 12
    • 1542723586 scopus 로고    scopus 로고
    • Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences
    • Mitterer G, Huber M, Leidinger E, Kirisits C, Lubitz W, Mueller MW, Schmidt WM (2004) Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences. J Clin Microbiol 42: 1048-1057.
    • (2004) J Clin Microbiol , vol.42 , pp. 1048-1057
    • Mitterer, G.1    Huber, M.2    Leidinger, E.3    Kirisits, C.4    Lubitz, W.5    Mueller, M.W.6    Schmidt, W.M.7
  • 13
    • 0036804777 scopus 로고    scopus 로고
    • A multiplex polymerase chain reaction-based diagnostic method for bacterial vaginosis
    • Yasuoka MO (2002) A multiplex polymerase chain reaction-based diagnostic method for bacterial vaginosis. Obst Gynecol 100: 759-764.
    • (2002) Obst Gynecol , vol.100 , pp. 759-764
    • Yasuoka, M.O.1
  • 16
    • 0029143069 scopus 로고
    • Universal PCR primers for detection of phytopathogenic Agrobacterium strains
    • Haas JH, Moore LW, Ream W, Manulis S (1995) Universal PCR primers for detection of phytopathogenic Agrobacterium strains. Appl Environ Microbiol 61: 2879-2884.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 2879-2884
    • Haas, J.H.1    Moore, L.W.2    Ream, W.3    Manulis, S.4
  • 17
    • 0036254441 scopus 로고    scopus 로고
    • Rapid detection of Shigella species in environmental sewage by an immunocapture PCR with universal primers
    • Peng X, Luo W, Zhang J, Wang S, Lin S (2002) Rapid detection of Shigella species in environmental sewage by an immunocapture PCR with universal primers. Appl Environ Microbiol 68: 2580-2583.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2580-2583
    • Peng, X.1    Luo, W.2    Zhang, J.3    Wang, S.4    Lin, S.5
  • 18
    • 2442610844 scopus 로고    scopus 로고
    • PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients
    • Spilker T, Coenye T, Vandamme P, LiPuma JJ (2004) PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients. J Clin Microbiol 42: 2074-2079.
    • (2004) J Clin Microbiol , vol.42 , pp. 2074-2079
    • Spilker, T.1    Coenye, T.2    Vandamme, P.3    Lipuma, J.J.4
  • 19
    • 80054117970 scopus 로고    scopus 로고
    • Bethlehem University, DNA sequencing
    • Bethlehem University, DNA sequencing http://hrl. bethlehem. edu/services. shtml.
  • 20
    • 0242573334 scopus 로고    scopus 로고
    • Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware Estuary
    • Kirchman DL, Yu L, Cottrell MT (2003) Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware Estuary. Appl Environ Microbiol 69: 6587-6596.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6587-6596
    • Kirchman, D.L.1    Yu, L.2    Cottrell, M.T.3
  • 21
    • 0028840458 scopus 로고
    • PCR assay based on DNA coding for 16S rRNA for detection and identification of Mycobacteria in clinical samples
    • Kox LFF, van Leeuwen J, Knijper S, Jansen HM, Kolk HJ (1995) PCR assay based on DNA coding for 16S rRNA for detection and identification of Mycobacteria in clinical samples. J Clin Microbiol 33: 3225-3233.
    • (1995) J Clin Microbiol , vol.33 , pp. 3225-3233
    • Kox, L.F.F.1    van Leeuwen, J.2    Knijper, S.3    Jansen, H.M.4    Kolk, H.J.5
  • 22
    • 0032780147 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis rrn promoters: Differential usage and growth rate-dependent control
    • Verma A, Sampla AK, Tyagi JS (1999) Mycobacterium tuberculosis rrn promoters: differential usage and growth rate-dependent control. J Bacteriol 181: 4326-4333.
    • (1999) J Bacteriol , vol.181 , pp. 4326-4333
    • Verma, A.1    Sampla, A.K.2    Tyagi, J.S.3
  • 24
    • 0029023142 scopus 로고
    • Oligonucleotide primers designed to differentiate pathogenic Pseudomonads on the basis of the sequencing of genes coding for 16S-23S rRNA internal transcribed spacers
    • Tyler SD, Strathdee CA, Rozee KR, Johnson WM (1995) Oligonucleotide primers designed to differentiate pathogenic Pseudomonads on the basis of the sequencing of genes coding for 16S-23S rRNA internal transcribed spacers. Clin Diag Lab Immunol 2: 448-453.
    • (1995) Clin Diag Lab Immunol , vol.2 , pp. 448-453
    • Tyler, S.D.1    Strathdee, C.A.2    Rozee, K.R.3    Johnson, W.M.4
  • 25
    • 0345004957 scopus 로고    scopus 로고
    • RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: A phylogenetic approach
    • Aakra A, Utaker JB, Nes IF (1999) RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: a phylogenetic approach. Int J Sys Bacteriol 49: 123-130.
    • (1999) Int J Sys Bacteriol , vol.49 , pp. 123-130
    • Aakra, A.1    Utaker, J.B.2    Nes, I.F.3
  • 26
    • 33645947318 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting gram-negative bacteria in the clinical laboratory
    • Bosshard PP, Zbinden R, Abels S, Boddinghaus B, Altwegg M, Bottger EC (2006) 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting gram-negative bacteria in the clinical laboratory. J Clin Microbiol 44: 1359-1366.
    • (2006) J Clin Microbiol , vol.44 , pp. 1359-1366
    • Bosshard, P.P.1    Zbinden, R.2    Abels, S.3    Boddinghaus, B.4    Altwegg, M.5    Bottger, E.C.6
  • 27
    • 0032723152 scopus 로고    scopus 로고
    • Rapid identification of Campylobacter, Arcobacter and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene
    • Marshall SM, Melito PL, Woodward DL, Johnson WM, Rodgers FG, Mulvey MR (1999) Rapid identification of Campylobacter, Arcobacter and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene. J Clin Microbiol 37: 4158-4160.
    • (1999) J Clin Microbiol , vol.37 , pp. 4158-4160
    • Marshall, S.M.1    Melito, P.L.2    Woodward, D.L.3    Johnson, W.M.4    Rodgers, F.G.5    Mulvey, M.R.6
  • 28
    • 34247243307 scopus 로고    scopus 로고
    • Letter to the editor nonspecific pcr amplification of the 16s rrna gene segment in different bacteria by use of primers specific for Campylobacter, Arcobacter and Helicobacter spp
    • Raut AD, Kapadnis BP, Shashidhar R, Bandekar JR, Vaishampayan P, Shouche YS (2007) Letter to the editor "nonspecific pcr amplification of the 16s rrna gene segment in different bacteria by use of primers specific for Campylobacter, Arcobacter and Helicobacter spp". J Clin Microbiol 45: 1376-1377.
    • (2007) J Clin Microbiol , vol.45 , pp. 1376-1377
    • Raut, A.D.1    Kapadnis, B.P.2    Shashidhar, R.3    Bandekar, J.R.4    Vaishampayan, P.5    Shouche, Y.S.6
  • 30
    • 33751005306 scopus 로고    scopus 로고
    • Advantage of using inosine at the 3-termini of 16S rRNA gene universal primers for the study of microbial diversity
    • Ben-Dov E, Shapiro OH, Siboni N, Kushmaro A (2006) Advantage of using inosine at the 3-termini of 16S rRNA gene universal primers for the study of microbial diversity. Appl Envir Microbiol 72: 6902-6906.
    • (2006) Appl Envir Microbiol , vol.72 , pp. 6902-6906
    • Ben-Dov, E.1    Shapiro, O.H.2    Siboni, N.3    Kushmaro, A.4
  • 31
    • 12844283903 scopus 로고    scopus 로고
    • Manual and Automated instrumentation for identification of Enterobacteriaceae and Other Aerobic Gram-negative Bacilli
    • O'Hara CM (2005) Manual and Automated instrumentation for identification of Enterobacteriaceae and Other Aerobic Gram-negative Bacilli. Clin Microbiol Rev 18: 147-162.
    • (2005) Clin Microbiol Rev , vol.18 , pp. 147-162
    • O'Hara, C.M.1
  • 33
    • 0030870145 scopus 로고    scopus 로고
    • Use of multiplex PCR for simultaneous detection of four bacterial species in middle ear effusions
    • Hendolin PH, Markkanen A, Ylikoski J, Wahlfors JJ (1997) Use of multiplex PCR for simultaneous detection of four bacterial species in middle ear effusions. J Clin Microbiol 35: 2854-2858.
    • (1997) J Clin Microbiol , vol.35 , pp. 2854-2858
    • Hendolin, P.H.1    Markkanen, A.2    Ylikoski, J.3    Wahlfors, J.J.4
  • 34
    • 0033909552 scopus 로고    scopus 로고
    • Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria
    • Daly K, Sharp RJ, McCarthy AJ (2000) Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria. Microbiol 146: 1693-1705.
    • (2000) Microbiol , vol.146 , pp. 1693-1705
    • Daly, K.1    Sharp, R.J.2    McCarthy, A.J.3
  • 35
    • 33750935495 scopus 로고    scopus 로고
    • Simultaneous amplification and differentiation of 25 human papillomaviruses with Templex technology
    • Han J, Swan DC, Smith SJ, Lum SH, Sefers SE, Unger ER, Tang YW (2006) Simultaneous amplification and differentiation of 25 human papillomaviruses with Templex technology. J Clin Microbiol 44: 4157-4162.
    • (2006) J Clin Microbiol , vol.44 , pp. 4157-4162
    • Han, J.1    Swan, D.C.2    Smith, S.J.3    Lum, S.H.4    Sefers, S.E.5    Unger, E.R.6    Tang, Y.W.7
  • 36
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
    • Daims H, Brühl A, Amann R, Schleifer KH, Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 37
    • 33947271474 scopus 로고    scopus 로고
    • Use of the Agilent 2100 Bioanalyzer for Rapid and Reproducible Molecular Typing of Streptococcus pneumoniae
    • Hathaway LJ, Brugger S, Martynova A, Aebi S, Mühlemann K (2007) Use of the Agilent 2100 Bioanalyzer for Rapid and Reproducible Molecular Typing of Streptococcus pneumoniae. J Clin Microbiol 45: 803-809.
    • (2007) J Clin Microbiol , vol.45 , pp. 803-809
    • Hathaway, L.J.1    Brugger, S.2    Martynova, A.3    Aebi, S.4    Mühlemann, K.5
  • 39
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 40
    • 0023928652 scopus 로고
    • A broad-spectrum probe for molecular epidemiology of bacteria: Ribosomal RNA
    • Stull TL, LiPuma JJ, Edlind TD (1988) A broad-spectrum probe for molecular epidemiology of bacteria: ribosomal RNA. Infect Dis 157: 280-285.
    • (1988) Infect Dis , vol.157 , pp. 280-285
    • Stull, T.L.1    Lipuma, J.J.2    Edlind, T.D.3
  • 41
    • 80054108152 scopus 로고    scopus 로고
    • Eubacterial Species
    • Eubacterial Species http://www. speciesaccounts. org/SPECIES%20LISTS. htm.
  • 43
    • 80054091023 scopus 로고    scopus 로고
    • BLAST
    • BLAST: http://www. ncbi. nlm. nih. gov/sutils/genom_table. cgi.
  • 44
    • 80054107213 scopus 로고    scopus 로고
    • BLAST (Nucleotide collection)
    • BLAST (Nucleotide collection): http://blast. ncbi. nlm. nih. gov/Blast. cgi?PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST.
  • 47
    • 25844493584 scopus 로고    scopus 로고
    • Molecular and phenotypic features for identification of the opportunistic pathogens Ochrobactrum spp
    • Teyssier C, Marchandin H, Jean-Pierre H, Diego I, Darbas H, Jeannot JL et al (2005) Molecular and phenotypic features for identification of the opportunistic pathogens Ochrobactrum spp. J Med Microbiol 54: 945-953.
    • (2005) J Med Microbiol , vol.54 , pp. 945-953
    • Teyssier, C.1    Marchandin, H.2    Jean-Pierre, H.3    Diego, I.4    Darbas, H.5    Jeannot, J.L.6
  • 48
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of pseudomonas putida strains
    • Yamamoto S, Harayama S (1995) PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of pseudomonas putida strains. Appl Envir Microbiol 61: 1104-1109.
    • (1995) Appl Envir Microbiol , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2


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