Methylobacillus arboreus sp. nov., and Methylobacillus gramineus sp. nov., novel non-pigmented obligately methylotrophic bacteria associated with plants

Systematic and Applied Microbiology

Volumn 34, Issue 7, 2011, Pages 477-481

  Gogleva, Anna A ^a,b   Kaparullina, Elena N ^a,b   Doronina, Nina V ^a,b   Trotsenko, Yuri A ^a,b  

^a SKRYABIN INSTITUTE OF BIOCHEMISTRY AND PHYSIOLOGY OF MICROORGANISMS   (Russian Federation)

^b PUSHCHINO STATE UNIVERSITY   (Russian Federation)

Author keywords

Methylobacillus; Methylotrophy; Rump

Indexed keywords

AMMONIA; CARDIOLIPIN; GLUTAMATE DEHYDROGENASE; METHANOL; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; RIBULOSE PHOSPHATE; RNA 16S; UBIQUINONE;

ARTICLE; BACTERIAL REPRODUCTION; BACTERIAL STRAIN; BACTERIUM ISOLATION; BINARY FISSION; ENZYME ACTIVITY; GENE SEQUENCE; LIPID COMPOSITION; METHYLOBACILLUS; METHYLOBACILLUS ARBOREUS; METHYLOBACILLUS GRAMINEUS; METHYLOTROPHIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ALCOHOL OXIDOREDUCTASES; AMMONIA; BASE COMPOSITION; BASE SEQUENCE; CELL WALL; FATTY ACIDS; FORMALDEHYDE; GENES, BACTERIAL; GENES, RRNA; GLUTAMATE DEHYDROGENASE; METABOLIC NETWORKS AND PATHWAYS; METHANOL; METHYLOBACILLUS; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHOSPHOLIPIDS; PHYLOGENY; POTENTILLA; RIBOTYPING; RNA, RIBOSOMAL, 16S; SALIX; UBIQUINONE;

METHYLOBACILLUS; NEGIBACTERIA;

EID: 80054005589     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2011.03.005     Document Type: Article

References (24)

1. Anthony C., Williams P. The structure and mechanism of methanol dehydrogenase. Biochim. Biophys. Acta 2003, 1647:18-23.
2. Doronina N.V., Trotsenko Y.A. Methylophilus leisingerii sp. nov., a new species of restricted facultatively methylotrophic bacteria. Microbiology 1994, 63:529-536. (English translation).
3. Doronina N.V., Ivanova E.G., Trotsenko Y.A. New evidence for the ability of methylotrophic bacteria and methanotrophs to synthesize auxins. Microbiology 2002, 71:130-132. (English translation).
4. Doronina N.V., Darmaeva T.D., Trotsenko Yu.A. Methylophaga alcalica sp. nov., a novel alcaliphilic and moderately halophilic obligately methylotrophic bacterium from the East Mongolian saline soda lake. Int. J. Syst. Evol. Microbiol. 2003, 53:223-229.
5. Doronina N.V., Trotsenko Y.A., Kolganova T.V., Tourova T.P., Salkinoja-Salonen M.S. Methylobacillus pratensis sp. nov., a novel non-pigmented, aerobic, obligately methylotrophic bacterium isolated from meadow grass. Int. J. Syst. Evol. Microbiol. 2004, 54:1453-1457.
6. Doronina N.V., Ivanova E.G., Trotsenko Yu.A. Phylogenetic position and emended description of the genus Methylovorus. Int. J. Syst. Evol. Microbiol. 2005, 55:903-906.
7. Gordon S.A., Weber R.P. Colorimetric estimation of indole-acetic acid. Plant Physiol. 1951, 26:192-195.
8. Govorukhina N.I., Kletsova L.V., Tsygankov Y.A., Trotsenko Y.A., Netrusov A.I. Characteristics of a new obligate methylotroph. Microbiology 1987, 56:849-854. (English translation).
9. Hall T.A. BioEdit: a user-friendly biological sequence editor and analysis program for Windows 95/98NT. Nucleic Acid Symp. Ser. 1999, 41:95-98.
10. Ivanova E., Doronina N., Trotsenko Yu. Hansschlegelia plantiphila gen. nov. sp. nov., a new aerobic restricted facultative methylotrophic bacterium associated with plants. Syst. Appl. Microbiol. 2007, 30:444-452.
11. Jenkins O., Byrom D., Jones D. Methylophilus: a new genus of methanol-utilizing bacteria. Int. J. Syst. Bacteriol. 1987, 37:446-448.
12. Johnson J.L. DNA reassociation and RNA hybridization of bacterial nucleic acids. Methods Microbiol. 1985, 28:33-74.
13. Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
14. Marmur J.A. A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 1961, 3:208-214.
15. McDonald I.R., Murrell J.C. The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs. Appl. Environ. Microbiol. 1997, 63:3218-3224.
16. Owen R.J., Lapage S.P. The thermal denaturation of purified bacterial deoxyribonucleic acid and its taxonomic applications. J. Appl. Bacteriol. 1976, 41:335-340.
17. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
18. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
19. Trotsenko Y.A., Doronina N.V., Govorukhina N.I. Metabolism of non-motile obligately methylotrophic bacteria. FEMS Microbiol. Lett. 1986, 3:293-297.
20. Trotsenko Y.A., Ivanova E.G., Doronina N.V. Aerobic methylotrophic bacteria as phytosymbionts. Microbiology 2001, 70:725-736. (English translation).
21. Urakami T., Komagata K. Characterization of species of marine methylotrophs of the genus Methylophaga. Int. J. Syst. Bacteriol. 1987, 37:402-406.
22. Urakami T., Komagata K. Emendation of Methylobacillus Yordy and Weaver 1977, a genus for methanol-utilizing bacteria. Int. J. Syst. Bacteriol. 1986, 36:502-511.
23. Van de Peer Y., De Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 1994, 10:569-570.
24. Yordy J.R., Weaver T.Y. Methylobacillus: a new genus of obligate methylotrophic bacteria. Int. J. Syst. Bacteriol. 1977, 27:247-255.