-
1
-
-
0033950340
-
Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophile Bacillus thermoleovorans
-
Annweiler E, Richnow HH, Antranikian G, Hebenbrock S, Garms C, Franke S et al (2000) Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophile Bacillus thermoleovorans. Appl Environ Microbiol 66: 518-523.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 518-523
-
-
Annweiler, E.1
Richnow, H.H.2
Antranikian, G.3
Hebenbrock, S.4
Garms, C.5
Franke, S.6
-
3
-
-
0034016917
-
Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers
-
Bastiaens L, Springael D, Wattiau P, Harms H, deWachter R, Verachtert H, Diels L (2000) Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers. Appl Environ Microbiol 66: 1834-1843.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1834-1843
-
-
Bastiaens, L.1
Springael, D.2
Wattiau, P.3
Harms, H.4
Dewachter, R.5
Verachtert, H.6
Diels, L.7
-
4
-
-
43049091532
-
Bacterial metabolism of polycyclic aromatic hydrocarbons: strategies for bioremediation
-
Chauhan A, Faziurrahman, Oakeshott JG, Jain RK (2008) Bacterial metabolism of polycyclic aromatic hydrocarbons: strategies for bioremediation. J Ind Microbiol 48: 95-113.
-
(2008)
J Ind Microbiol
, vol.48
, pp. 95-113
-
-
Chauhan, A.1
Faziurrahman2
Oakeshott, J.G.3
Jain, R.K.4
-
5
-
-
0344312334
-
Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway
-
Denome SA, Stanley DC, Olson ES, Young KD (1993) Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway. J Bacteriol 176: 2158-2164.
-
(1993)
J Bacteriol
, vol.176
, pp. 2158-2164
-
-
Denome, S.A.1
Stanley, D.C.2
Olson, E.S.3
Young, K.D.4
-
6
-
-
0028801011
-
Formation of indigo and related compounds from indolecarboxylic acids by aromatic acid-degrading bacteria: chromogenic reactions for cloning genes encoding dioxygenases that act on aromatic acids
-
Eaton RW, Chapman PJ (1995) Formation of indigo and related compounds from indolecarboxylic acids by aromatic acid-degrading bacteria: chromogenic reactions for cloning genes encoding dioxygenases that act on aromatic acids. J Bacteriol 177: 6983-6988.
-
(1995)
J Bacteriol
, vol.177
, pp. 6983-6988
-
-
Eaton, R.W.1
Chapman, P.J.2
-
7
-
-
24044513966
-
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
-
Elias JE, Haas W, Faherty BK, Gygi SP (2005) Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat Methods 2: 667-675.
-
(2005)
Nat Methods
, vol.2
, pp. 667-675
-
-
Elias, J.E.1
Haas, W.2
Faherty, B.K.3
Gygi, S.P.4
-
8
-
-
0031967070
-
A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2
-
Fuenmayor SL, Wild M, Boyes AL, Williams P (1998) A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J Bacteriol 180: 2522-2530.
-
(1998)
J Bacteriol
, vol.180
, pp. 2522-2530
-
-
Fuenmayor, S.L.1
Wild, M.2
Boyes, A.L.3
Williams, P.4
-
9
-
-
0031768236
-
Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of Puget Sound Cycloclasticus strains
-
Geiselbrecht AD, Hedlund BP, Tichi MA, Staley JT (1998) Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of Puget Sound Cycloclasticus strains. Appl Environ Microbiol 64: 4703-4710.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4703-4710
-
-
Geiselbrecht, A.D.1
Hedlund, B.P.2
Tichi, M.A.3
Staley, J.T.4
-
10
-
-
0031437067
-
Genetics of naphthalene and phenanthrene degradation by Comamonas testosterone
-
Goyal AK, Zylstra GJ (1997) Genetics of naphthalene and phenanthrene degradation by Comamonas testosterone. J Ind Microbiol Biotechol 19: 401-407.
-
(1997)
J Ind Microbiol Biotechol
, vol.19
, pp. 401-407
-
-
Goyal, A.K.1
Zylstra, G.J.2
-
11
-
-
0037506334
-
Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria
-
Habe H, Omori T (2003) Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci Biotechnol Biochem 67: 225-243.
-
(2003)
Biosci Biotechnol Biochem
, vol.67
, pp. 225-243
-
-
Habe, H.1
Omori, T.2
-
12
-
-
0030977550
-
Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site
-
Herrick JB, Stuart-Keil KG, Ghiorse WC, Madsen EL (1997) Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. Appl Environ Microbiol 63: 2330-2337.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2330-2337
-
-
Herrick, J.B.1
Stuart-Keil, K.G.2
Ghiorse, W.C.3
Madsen, E.L.4
-
13
-
-
0038017090
-
Degradation of phenanthrene and naphthalene by a Burkholderia species strain
-
Kang H, Hwang SY, Kim YM, Kim E, Kim YS, Kim SK et al (2003) Degradation of phenanthrene and naphthalene by a Burkholderia species strain. Can J Microbiol 49: 139-144.
-
(2003)
Can J Microbiol
, vol.49
, pp. 139-144
-
-
Kang, H.1
Hwang, S.Y.2
Kim, Y.M.3
Kim, E.4
Kim, Y.S.5
Kim, S.K.6
-
14
-
-
0032524127
-
Structure of an aromatic ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase
-
Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S (1998) Structure of an aromatic ring-hydroxylating dioxygenase-naphthalene 1, 2-dioxygenase. Structure 6: 571-586.
-
(1998)
Structure
, vol.6
, pp. 571-586
-
-
Kauppi, B.1
Lee, K.2
Carredano, E.3
Parales, R.E.4
Gibson, D.T.5
Eklund, H.6
Ramaswamy, S.7
-
15
-
-
0032900505
-
The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism
-
Laurie AD, Lloyd-Jones G (1999) The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism. J Bacteriol 181: 531-540.
-
(1999)
J Bacteriol
, vol.181
, pp. 531-540
-
-
Laurie, A.D.1
Lloyd-Jones, G.2
-
16
-
-
0034019871
-
Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR
-
Laurie AD, Lloyd-Jones G (2000) Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR. Appl Environ Microbiol 66: 1814-1817.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1814-1817
-
-
Laurie, A.D.1
Lloyd-Jones, G.2
-
17
-
-
34347391727
-
Fluoranthene metabolism and associated proteins in Mycobacterium sp. JS14
-
Lee SE, Seo JS, Keum YS, Lee KJ, Li QX (2007) Fluoranthene metabolism and associated proteins in Mycobacterium sp. JS14. Proteomics 7: 2059-2069.
-
(2007)
Proteomics
, vol.7
, pp. 2059-2069
-
-
Lee, S.E.1
Seo, J.S.2
Keum, Y.S.3
Lee, K.J.4
Li, Q.X.5
-
18
-
-
77952899467
-
Synthesis of metabolites of polycyclic aromatic hydrocarbons
-
Liu M, Cui Y, Duan Y, Zhong J, Sun W, Wang M et al (2010) Synthesis of metabolites of polycyclic aromatic hydrocarbons. Mini Rev Org Chem 7: 134-144.
-
(2010)
Mini Rev Org Chem
, vol.7
, pp. 134-144
-
-
Liu, M.1
Cui, Y.2
Duan, Y.3
Zhong, J.4
Sun, W.5
Wang, M.6
-
19
-
-
33644950125
-
Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer
-
Ma Y, Wang L, Shao Z (2006) Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer. Environ Microbiol 8: 455-465.
-
(2006)
Environ Microbiol
, vol.8
, pp. 455-465
-
-
Ma, Y.1
Wang, L.2
Shao, Z.3
-
20
-
-
34447529272
-
A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(29-hydroxyphenyl)-pent-4-enoic acid
-
Mallick S, Chatterjee S, Dutta TK (2007) A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2, 3-dioxo-5-(29-hydroxyphenyl)-pent-4-enoic acid. Microbiology 153: 2104-2115.
-
(2007)
Microbiology
, vol.153
, pp. 2104-2115
-
-
Mallick, S.1
Chatterjee, S.2
Dutta, T.K.3
-
22
-
-
0026743341
-
The electron-transport proteins of hydroxylating bacterial dioxygenases
-
Mason JR, Cammack R (1992) The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu Rev Microbiol 46: 277-305.
-
(1992)
Annu Rev Microbiol
, vol.46
, pp. 277-305
-
-
Mason, J.R.1
Cammack, R.2
-
23
-
-
0030013485
-
Evidence for acquisition in nature of a chromosomal 2,4-dichlorophenoxyacetic acid/a-ketoglutarate dioxygenase gene by different Burkholderia spp
-
Matheson VG, Forney LJ, Suwa Y, Nakatsu CH, Sexstone AJ, Holben WE (1996) Evidence for acquisition in nature of a chromosomal 2, 4-dichlorophenoxyacetic acid/a-ketoglutarate dioxygenase gene by different Burkholderia spp. Appl Environ Microbiol 62: 2457-2463.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2457-2463
-
-
Matheson, V.G.1
Forney, L.J.2
Suwa, Y.3
Nakatsu, C.H.4
Sexstone, A.J.5
Holben, W.E.6
-
24
-
-
0035318658
-
Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1
-
Moody JD, Freeman JP, Doerge DR, Cerniglia CE (2001) Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1. Appl Environ Microbiol 67: 1476-1483.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1476-1483
-
-
Moody, J.D.1
Freeman, J.P.2
Doerge, D.R.3
Cerniglia, C.E.4
-
25
-
-
0035000850
-
Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria
-
Moser R, Stahl U (2001) Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria. Appl Microbiol Biotechnol 55: 609-618.
-
(2001)
Appl Microbiol Biotechnol
, vol.55
, pp. 609-618
-
-
Moser, R.1
Stahl, U.2
-
26
-
-
0034051818
-
Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme
-
Parales RE, Lee K, Resnick SM, Jiang H, Lessner DJ, Gibson DT (2000) Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J Bacteriol 182: 1641-1649.
-
(2000)
J Bacteriol
, vol.182
, pp. 1641-1649
-
-
Parales, R.E.1
Lee, K.2
Resnick, S.M.3
Jiang, H.4
Lessner, D.J.5
Gibson, D.T.6
-
27
-
-
53749102061
-
Microbial biodegradation of polyaromatic hydrocarbons
-
Peng RH, Xiong AS, Xue Y, Fu XY, Gao F, Zhao W et al (2008) Microbial biodegradation of polyaromatic hydrocarbons. FEMS Microbiol Rev 32: 927-955.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 927-955
-
-
Peng, R.H.1
Xiong, A.S.2
Xue, Y.3
Fu, X.Y.4
Gao, F.5
Zhao, W.6
-
28
-
-
0034308010
-
Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2
-
Pinyakong O, Habe H, Supaka N, Pinpanichkarn P, Juntongjin K, Yoshida T et al (2000) Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2. FEMS Microbiol Lett 191: 115-121.
-
(2000)
FEMS Microbiol Lett
, vol.191
, pp. 115-121
-
-
Pinyakong, O.1
Habe, H.2
Supaka, N.3
Pinpanichkarn, P.4
Juntongjin, K.5
Yoshida, T.6
-
29
-
-
0033027259
-
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
-
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C et al (1999) Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J Bacteriol 181: 1585-1602.
-
(1999)
J Bacteriol
, vol.181
, pp. 1585-1602
-
-
Romine, M.F.1
Stillwell, L.C.2
Wong, K.K.3
Thurston, S.J.4
Sisk, E.C.5
Sensen, C.6
-
30
-
-
33845902794
-
Degradation of phenanthrene by Burkholderia sp. C3: initial 1,2- and 3,4-dioxygenation and meta- and ortho-cleavage of naphthalene-1,2-diol
-
Seo JS, Keum YS, Hu Y, Lee SE, Li QX (2006a) Degradation of phenanthrene by Burkholderia sp. C3: initial 1, 2- and 3, 4-dioxygenation and meta- and ortho-cleavage of naphthalene-1, 2-diol. Biodegradation 18: 123-131.
-
(2006)
Biodegradation
, vol.18
, pp. 123-131
-
-
Seo, J.S.1
Keum, Y.S.2
Hu, Y.3
Lee, S.E.4
Li, Q.X.5
-
31
-
-
33750987058
-
Phenanthrene degradation in Arthrobacter sp. P1-1: initial 1,2-, 3,4- and 9,10-dioxygenation, and meta- and ortho-cleavages of naphthalene-1, 2-diol after its formation from naphthalene-1,2-dicarboxylic acid and hydroxyl naphthoic acids
-
Seo JS, Keum YS, Hu Y, Lee SE, Li QX (2006b) Phenanthrene degradation in Arthrobacter sp. P1-1: initial 1, 2-, 3, 4- and 9, 10-dioxygenation, and meta- and ortho-cleavages of naphthalene-1, 2-diol after its formation from naphthalene-1, 2-dicarboxylic acid and hydroxyl naphthoic acids. Chemosphere 65: 2388-2394.
-
(2006)
Chemosphere
, vol.65
, pp. 2388-2394
-
-
Seo, J.S.1
Keum, Y.S.2
Hu, Y.3
Lee, S.E.4
Li, Q.X.5
-
32
-
-
34447628062
-
Isolation and characterization of bacteria capable of degrading polycyclic aromatic hydrocarbons (PAHs) and organophosphorus pesticides from PAH-contaminated soil in Hilo, Hawaii
-
Seo JS, Keum YS, Harada RM, Li QX (2007) Isolation and characterization of bacteria capable of degrading polycyclic aromatic hydrocarbons (PAHs) and organophosphorus pesticides from PAH-contaminated soil in Hilo, Hawaii. J Agric Food Chem 55: 5383-5389.
-
(2007)
J Agric Food Chem
, vol.55
, pp. 5383-5389
-
-
Seo, J.S.1
Keum, Y.S.2
Harada, R.M.3
Li, Q.X.4
-
34
-
-
0027156189
-
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB-9816-4
-
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A et al (1993) Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB-9816-4. Gene 127: 31-37.
-
(1993)
Gene
, vol.127
, pp. 31-37
-
-
Simon, M.J.1
Osslund, T.D.2
Saunders, R.3
Ensley, B.D.4
Suggs, S.5
Harcourt, A.6
-
35
-
-
0037391355
-
Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments
-
Wilson MS, Herrick JB, Jeon CO, Hinman DE, Madsen EL (2003) Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments. Appl Environ Microbiol 69: 2172-2181.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2172-2181
-
-
Wilson, M.S.1
Herrick, J.B.2
Jeon, C.O.3
Hinman, D.E.4
Madsen, E.L.5
-
36
-
-
0034993341
-
Real-time reverse transcriptase-polymerase chain reaction (RT-PCR) for measurement of cytokine and growth factor mRNA expression with fluorogenic probes or SYBR Green I
-
Yin JL, Shackel NA, Zekry A, McGuinness PH, Richards C, Putten KVD et al (2001) Real-time reverse transcriptase-polymerase chain reaction (RT-PCR) for measurement of cytokine and growth factor mRNA expression with fluorogenic probes or SYBR Green I. Immunol Cell Biol 79: 213-221.
-
(2001)
Immunol Cell Biol
, vol.79
, pp. 213-221
-
-
Yin, J.L.1
Shackel, N.A.2
Zekry, A.3
McGuinness, P.H.4
Richards, C.5
Putten, K.V.D.6
-
37
-
-
0035167509
-
nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism
-
Zhou NY, Fuenmayor SL, Williams PA (2001) nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J Bacteriol 183: 700-708.
-
(2001)
J Bacteriol
, vol.183
, pp. 700-708
-
-
Zhou, N.Y.1
Fuenmayor, S.L.2
Williams, P.A.3
|