Bell pepper endornavirus: Molecular and biological properties, and occurrence in the genus Capsicum

Journal of General Virology

Volumn 92, Issue 11, 2011, Pages 2664-2673

  Okada, Ryo ^a   Kiyota, Eri ^a   Sabanadzovic, Sead ^b   Moriyama, Hiromitsu ^a   Fukuhara, Toshiyuki ^a   Saha, Prasenjit ^c   Roossinck, Marilyn J ^c   Severin, Ake ^d   Valverde, Rodrigo A ^e  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^b MISSISSIPPI STATE UNIVERSITY   (United States)

^c PLANT BIOLOGY DIVISION   (United States)

^d UNIVERSITÉ FÉLIX HOUPHOUËT BOIGNY   (Côte d’Ivoire)

^e LOUISIANA STATE UNIVERSITY AGRICULTURAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYSTINE; DOUBLE STRANDED RNA; GLYCOSYLTRANSFERASE; METHYLTRANSFERASE; POLYPROTEIN; RNA HELICASE; RNA HELICASE 1; UNCLASSIFIED DRUG; VIRUS ENZYME; VIRUS PROTEIN; VIRUS RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; BELL PEPPER; BELL PEPPER ENDORNAVIRUS; CALLUS (PLANT); CAPSICUM BACCATUM; CAPSICUM CHINENSE; CAPSICUM FRUTESCENS; CONTROLLED STUDY; CULTIVAR; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT LEAF; PLANT VIRUS; POLLEN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN MOTIF; RNA VIRUS; VIRUS DETECTION;

AMINO ACID MOTIFS; CAPSICUM; GENETIC VARIATION; GENOME, VIRAL; JAPAN; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLANT VIRUSES; RNA VIRUSES; RNA, DOUBLE-STRANDED; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; UNITED STATES; VIRAL PROTEINS;

BELL PEPPER ENDORNAVIRUS; CAPSICUM; CAPSICUM ANNUUM; CAPSICUM BACCATUM; CAPSICUM CHINENSE; CAPSICUM FRUTESCENS; DSRNA VIRUSES; ENDORNAVIRUS;

EID: 80053991032     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.034686-0     Document Type: Article

References (41)

1. Coutts, R. H. A. (2005). First report of an endornavirus in the Cucurbitaceae. Virus Genes 31, 361-362.
2. DeWitt, D. & Bosland, P. W. (1996). Peppers of the World. Berkeley, CA: Ten Speed Press.
3. Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G. & other authors (2010). The Pfam protein families database. Nucleic Acids Res 38 (Database issue), D211-D222.
4. Fukuhara, T., Moriyama, H. & Nitta, T. (1995). The unusual structure of a novel RNA replicon in rice. J Biol Chem 270, 18147-18149.
5. Fukuhara, T., Koga, R., Aoki, N., Yuki, C., Yamamoto, N., Oyama, N., Udagawa, T., Horiuchi, H., Miyazaki, S. & other authors (2006). The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties. Arch Virol 151, 995-1002.
6. Gibbs, M. J., Koga, R., Moriyama, H., Pfeiffer, P. & Fukuhara, T. (2000). Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective singlestranded RNA virus. J Gen Virol 81, 227-233.
7. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
8. Hacker, C. V., Brasier, C. M. & Buck, K. W. (2005). A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene. J Gen Virol 86, 1561-1570.
9. Huelsenbeck, J. P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
10. Ikeda, K., Nakamura, H. & Matsumoto, N. (2003). Hypovirulent strain of the violet root rot fungus Helicobasidium mompa. J Gen Plant Pathol 69, 385-390.
11. Koonin, E. V., Dolja, V. V. & Morris, T. J. (1993). Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28, 375-430.
12. Lambden, P. R., Cooke, S. J., Caul, E. O. & Clarke, I. N. (1992). Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66, 1817-1822.
13. Lütcke, H. A., Chow, K. C., Mickel, F. S., Moss, K. A., Kern, H. F. & Scheele, G. A. (1987). Selection of AUG initiation codons differs in plants and animals. EMBO J 6, 43-48.
14. Maddison, W. P. & Maddison, D. R. (2010). Mesquite: a modular system for evolutionary analysis. Version 2.74. http://mesquiteproject.Org
15. Marchler-Bauer, A., Anderson, J. B., Derbyshire, M. K., DeWeese-Scott, C., Gonzales, N. R., Gwadz, M., Hao, L., He, S., Hurwitz, D. I. & other authors (2007). CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35 (Database issue), D237-D240.
16. Márquez, L. M., Redman, R. S., Rodríguez, R. J. & Roossinck, M. J. (2007). A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance. Science 315, 513-515.
17. McLeod, M. J., Guttman, S. I. & Eshbaugh, W. H. (1982). Early evolution of chili peppers (Capsicum). Econ Bot 36, 361-368.
18. Moriyama, H., Nitta, T. & Fukuhara, T. (1995). Double-stranded RNA in rice: a novel RNA replicon in plants. Mol Gen Genet 248, 364-369.
19. Moriyama, H., Horiuchi, H., Koga, R. & Fukuhara, T. (1999). Molecular characterization of two endogenous double-stranded RNAs in rice and their inheritance by interspecific hybrids. J Biol Chem 274, 6882-6888.
20. Morris, T. J. & Dodds, J. A. (1979). Isolation and analysis of doublestranded RNA from virus-infected plant and fungal tissue. Phytopathology 69, 854-858.
21. Moscone, E. A., Scaldaferro, M. A., Grabiele, M, Cecchini, N. M., Sánchez Garcia, Y., Jarret.,R., Daviña, J. R., Ducasse, D. A., Barboza, G. E. & Eherendorfer, F. (2007). The evolution of chili peppers (Capsicum - Solanaceae): a cytogenetic perspective. Acta Hortic745, 137-170.
22. Osaki, H., Nakamura, H., Sasaki, A., Matsumoto, N. & Yoshida, K. (2006). An endornavirus from a hypovirulent strain of the violet root rot fungus, Helicobasidium mompa. Virus Res 118, 143-149.
23. Pfeiffer, P. (1998). Nucleotide sequence, genetic organization and expression strategy of the double-stranded RNA associated with the '447' cytoplasmic male sterility trait in Vicia faba. J Gen Virol 79, 2349-2358.
24. Pickersgill, B. (1966). The variability and relationships of Capsicum chinense Jacq. PhD dissertation, Indiana University, Bloomington, Indiana, USA.
25. Pickersgill, B. (1971). Relationships between weedy and cultivated forms in some species of chili peppers (genus Capsicum). Evolution 25, 683-691.
26. Poch, O., Sauvaget, I., Delarue, M. & Tordo, N. (1989). Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J 8, 3867-3874.
27. Roossinck, M. J., Sabanadzovic, S., Okada, R. & Valverde, R. A. (2011). The remarkable evolutionary history of endornaviruses. J Gen Virol 92, 2674-2678.
28. Roossinck, M. J., Saha, P., Wiley, G. B., Quan, J., White, J. D., Lai, H., Chavarría, F., Shen, G. & Roe, B. A. (2010). Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19 (Suppl. 1), 81-88.
29. Rozanov, M. N., Koonin, E. V. & Gorbalenya, A. E. (1992). Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J Gen Virol 73, 2129-2134.
30. Sabanadzovic, S. & Valverde, R. A. (2011). Properties and detection of two cryptoviruses from pepper (Capsicum annuum). Virus Genes 43, 307-312.
31. Stielow, B., Klenk, H.-P. & Menzel, W. (2011). Complete genome sequence of the first endornavirus from the ascocarp of the ectomycorrhizal fungus Tuber aestivum Vittad. Arch Virol 156, 343-345.
32. Swofford, D. L. (2002). PAUP*: Phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinauer Associates.
33. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
34. Tuomivirta, T. T., Kaitera, J. & Hantula, J. (2009). A novel putative virus of Gremmeniella abietina type B (Ascomycota: Helotiaceae) has a composite genome with endornavirus affinities. J Gen Virol 90, 2299-2305.
35. Valverde, R. A. & Fontenot, J. F. (1991). Variation in double-stranded ribonucleic acid among pepper cultivars. J Am Soc Hortic Sci 116, 903-905.
36. Valverde, R. A. & Gutierrez, D. L. (2007). Transmission of a dsRNA in bell pepper and evidence that it consists of the genome of an endornavirus. Virus Genes 35, 399-403.
37. Valverde, R. A. & Gutierrez, D. L. (2008). Molecular and biological properties of a putative partitivirus from Jalapeño pepper (Capsicum annuum L.). Rev Mex Fitopatol 26, 1-6.
38. Valverde, R. A., Nameth, S. T. & Jordan, R. L. (1990a). Analysis of double-stranded RNA for plant virus diagnosis. Plant Dis 74, 255-258.
39. Valverde, R. A., Nameth, S., Abdalla, O., Al-Musa, O., Desjardins, P. R. & Dodds, J. A. (1990b). Indigenous double-stranded RNA from pepper (Capsicum annum). Plant Sci 67, 195-201.
40. Wakarchuk, D. A. & Hamilton, R. I. (1990). Partial nucleotide sequence from enigmatic dsRNAs in Phaseolus vulgaris. Plant Mol Biol 14, 637-639.
41. Zabalgogeazcoa, I. A. & Gildow, F. E. (1992). Double-stranded ribonucleic acid in 'Barsoy' Barley. Plant Sci 83, 187-194.