Proteomic analysis of membrane proteins from streptococcus pneumoniae with multiple separation methods plus high accuracy mass spectrometry

OMICS A Journal of Integrative Biology

Volumn 15, Issue 10, 2011, Pages 683-694

  Sun, Xuesong ^a   Yang, Xiao Yan ^a   Yin, Xing Feng ^a   Yu, Guangchuang ^a   Xiao, Chuan Le ^a   He, Xiang ^a   He, Qing Yu ^a  

^a JINAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROFORM; MEMBRANE PROTEIN; TRIFLUOROETHANOL;

ARTICLE; CARBOHYDRATE METABOLISM; EXTRACTION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; OXIDATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN SECRETION; PROTEOMICS; SIGNAL TRANSDUCTION; STREPTOCOCCUS PNEUMONIAE; ULTRACENTRIFUGATION;

ATP-BINDING CASSETTE TRANSPORTERS; BACTERIAL PROTEINS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ISOELECTRIC FOCUSING; MEMBRANE PROTEINS; PEPTIDE FRAGMENTS; PROTEIN INTERACTION MAPPING; PROTEOLYSIS; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STREPTOCOCCUS PNEUMONIAE; TANDEM MASS SPECTROMETRY;

BACTERIA (MICROORGANISMS); POSIBACTERIA; STREPTOCOCCUS; STREPTOCOCCUS PNEUMONIAE;

EID: 80053959280     PISSN: 15362310     EISSN: 15578100     Source Type: Journal    
DOI: 10.1089/omi.2010.0133     Document Type: Article

References (57)

1. Alloing, G., De Philip, P., and Claverys, J.P. (1994). Three highly homologous membrane-bound lipoproteins participate in oligopeptide transport by the Ami system of the Gram-positive Streptococcus pneumoniae. J Mol Biol 241, 4-58.
2. Antelmann, H., Yamamoto, H., Sekiguchi, J., and Hecker, M. (2002). Stabilization of cell wall proteins in Bacillus subtilis: a proteomic approach. Proteomics 2, 591-602. (Pubitemid 34507349)
3. Argiro, L.L., Kohlstadt, S.S., Henri, S.S., Dessein, H.H., Matabiau, V.V., Paris, P.P., et al. (2000). Identification of a candidate vaccine peptide on the 37 kDa Schistosoma mansoni GAPDH. Vaccine 18, 2039-2048.
4. Bae, S.M., Yeon, S.M., Kim, T.S., and Lee, K.J. (2006). The effect of protein expression of Streptococcus pneumoniae by blood. J Biochem Mol Biol 39, 703-708.
5. Beckmann, C., Waggoner, J.D., Harris, T.O., Tamura, G.S., and Rubens, C.E. (2002). Identification of novel adhesins fromGroup B streptococci by use of phage display reveals that C5a peptidase mediates fibronectin binding. Infect Immun 70, 2869-2876. (Pubitemid 34564143)
6. Bergmann, S., Wild, D., Diekmann, O., Frank, R., Bracht, D., Chhatwal, G.S., and Hammerschmidt, S. (2003). Identification of a novel plasmin(ogen)-binding motif in surface displayed alphaenolase of Streptococcus pneumoniae. Mol Microbiol 49, 411-423. (Pubitemid 36851197)
7. Bergonzelli, G.E., Granato, D., Pridmore, R.D., Marvin-Guy, L.F., Donnicola, D., and Corthesy-Theulaz, I.E. (2006). GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: potential role in interactions with the host and the gastric pathogen Helicobacter pylori. Infect Immun 74, 425-434. (Pubitemid 43023099)
8. Berry, A.M., Lock, R.A., Hansman, D., and Paton, J.C., 1989. Contribution of autolysin to virulence of Streptococcus pneumoniae. Infect Immun 57, 2324-2330. (Pubitemid 19183838)
9. Bochkareva, E.S., Solovieva, M.E., and Girshovich, A.S. (1998). Targeting of GroEL to SecA on the cytoplasmic membrane of Escherichia coli. Proc Natl Acad Sci USA 95, 478-483. (Pubitemid 28083768)
10. Corratge-Faillie, C., Jabnoune, M., Zimmermann, S., Very, A.A., Fizames, C., and Sentenac, H. (2010). Potassium and sodium transport in non-animal cells: the Trk/Ktr/HKT transporter family. Cell Mol Life Sci 67, 2511-2532.
11. Crain, M.J., Waltman, W.D., 2nd, Turner, J.S., Yother, J., Talkington, D.F., McDaniel, L.S., et al. (1990). Pneumococcal surface protein A (PspA) is serologically highly variable and is expressed by all clinically important capsular serotypes of Streptococcus pneumoniae. Infect Immun 58, 3293-3299. (Pubitemid 20293438)
12. Cundell, D.R., Pearce, B.J., Sandros, J., Naughton, A.M., and Masure, H.R. (1995). Peptide permeases from Streptococcus pneumoniae affect adherence to eucaryotic cells. Infect Immun 63, 2493-2498.
13. Derbise, A., Song, Y.P., Parikh, S., Fischetti, V.A., and Pancholi, V. (2004). Role of the C-terminal lysine residues of streptococcal surface enolase in Glu- and Lys-plasminogen-binding activities of group A streptococci. Infect Immun 72, 94-105. (Pubitemid 38018166)
14. Deshusses, J.M., Burgess, J.A., Scherl, A., Wenger, Y., Walter, N., Converset, V., et al. (2003). Exploitation of specific properties of trifluoroethanol for extraction and separation of membrane proteins. Proteomics 3, 1418-1424. (Pubitemid 37048066)
15. Deutscher, J., Herro, R., Bourand, A., Mijakovic, I., and Poncet, S. (2005). P-Ser-HPr-a link between carbon metabolism and the virulence of some pathogenic bacteria. Biochim Biophys Acta 1754, 118-125. (Pubitemid 41797692)
16. Encheva, V., Gharbia, S.E., Wait, R., Begum, S., and Shah, H.N. (2006). Comparison of extraction procedures for proteome analysis of Streptococcus pneumoniae and a basic reference map. Proteomics 6, 3306-3317. (Pubitemid 43886148)
17. Ge, F., Xiao, C.L., Bi, L.J., Tao, S.C., Xiong, S., Yin, X.F., et al. (2010). Quantitative phosphoproteomics of proteasome inhibition in multiple myeloma cells. PLoS One 5.
18. Haas, W., Faherty, B.K., Gerber, S.A., Elias, J.E., Beausoleil, S.A., Bakalarski, C.E., et al. (2006). Optimization and use of peptide mass measurement accuracy in shotgun proteomics. Mol Cell Proteomics 5, 1326-1337. (Pubitemid 44103402)
19. He, Q.Y., Lau, G.K., Zhou, Y., Yuen, S.T., Lin, M.C., Kung, H.F., et al. (2003). Serum biomarkers of hepatitis B virus infected liver inflammation: a proteomic study. Proteomics 3, 666-674. (Pubitemid 36570257)
20. Higgins, C.F. (1992). ABC transporters: from microorganisms to man. Annu Rev Cell Biol 8, 67-113. (Pubitemid 23000992)
21. Higgins, C.F. (2001). ABC transporters: physiology, structure and mechanism-an overview. Res Microbiol 152, 205-210. (Pubitemid 32436480)
22. Higgins, C.F., Hiles, I.D., Salmond, G.P., Gill, D.R., Downie, J.A., Evans, I.J., et al. (1986). A family of related ATP-binding subunits coupled to many distinct biological processes in bacteria. Nature 323, 448-450. (Pubitemid 16026272)
23. Hong, S., and Pedersen, P.L. (2003). ATP synthases: insights into their motor functions from sequence and structural analyses. J Bioenerg Biomembr 35, 95-120. (Pubitemid 36723656)
24. Hsieh, Y.C., Lee, W.S., Shao, P.L., Chang, L.Y., and Huang, L.M. (2008). The transforming Streptococcus pneumoniae in the 21st century. Chang Gung Med J 31, 117-124.
25. Hyde, S.C., Emsley, P., Hartshorn, M.J., Mimmack, M.M., Gileadi, U., Pearce, S.R., et al. (1990). Structural model of ATPbinding proteins associated with cystic fibrosis, multidrug resistance and bacterial transport. Nature 346, 362-365.
26. Jin, H., Song, Y.P., Boel, G., Kochar, J., and Pancholi, V. (2005). Group A streptococcal surface GAPDH, SDH, recognizes uPAR/CD87 as its receptor on the human pharyngeal cell and mediates bacterial adherence to host cells. J Mol Biol 350, 27-41. (Pubitemid 40804729)
27. Kerr, A.R., Adrian, P.V., Estevao, S., De Groot, R., Alloing, G., Claverys, J.P., et al. (2004). The Ami-AliA/AliB permease of Streptococcus pneumoniae is involved in nasopharyngeal colonization but not in invasive disease. Infect Immun 72, 3902-3906. (Pubitemid 38821904)
28. Kesimer, M., Kilic, N., Mehrotra, R., Thornton, D.J., and Sheehan, J.K. (2009). Identification of salivary mucin MUC7 binding proteins from Streptococcus gordonii. BMC Microbiol 9, 163.
29. Lara, B., Rico, A.I., Petruzzelli, S., Santona, A., Dumas, J., Biton, J., et al. (2005). Cell division in cocci: localization and properties of the Streptococcus pneumoniae FtsA protein. Mol Microbiol 55, 699-711. (Pubitemid 40203687)
30. Ling, E., Feldman, G., Portnoi, M., Dagan, R., Overweg, K., Mulholland, F., et al. (2004). Glycolytic enzymes associated with the cell surface of Streptococcus pneumoniae are antigenic in humans and elicit protective immune responses in the mouse. Clin Exp Immunol 138, 290-298. (Pubitemid 39472446)
31. Maeda, M. (2008). ATP synthases: bioinformatic based insights into how their electrochemically driven motor comprised of subunits a and c might serve as a drug target. J Bioenerg Biomembr 40, 117-121.
32. McCarthy, J.S., Wieseman, M., Tropea, J., Kaslow, D., Abraham, D., Lustigman, S., et al. (2002). Onchocerca volvulus glycolytic enzyme fructose-1,6-bisphosphate aldolase as a target for a protective immune response in humans. Infect Immun 70, 851-858. (Pubitemid 34083849)
33. McDaniel, L.S., Sheffield, J.S., Delucchi, P., and Briles, D.E. (1991). PspA, a surface protein of Streptococcus pneumoniae, is capable of eliciting protection against pneumococci of more than one capsular type. Infect Immun 59, 222-228.
34. Mitchell, T.J. (2000). Virulence factors and the pathogenesis of disease caused by Streptococcus pneumoniae. Res Microbiol 151, 413-419. (Pubitemid 30619792)
35. Molloy, M.P., Herbert, B.R., Slade, M.B., Rabilloud, T., Nouwens, A.S., Williams, K.L., et al. (2000). Proteomic analysis of the Escherichia coli outer membrane. Eur J Biochem 267, 2871-2881. (Pubitemid 30321332)
36. Nandakumar, R., Nandakumar, M.P., Marten, M.R., and Ross, J.M. (2005). Proteome analysis of membrane and cell wall associated proteins from Staphylococcus aureus. J Proteome Res 4, 250-257. (Pubitemid 40548129)
37. Nessler, S. (2005). The bacterial HPr kinase/phosphorylase: a new type of Ser/Thr kinase as antimicrobial target. Biochim Biophys Acta 1754, 126-131. (Pubitemid 41797693)
38. Ng, E.W., Costa, J.R., Samiy, N., Ruoff, K.L., Connolly, E., Cousins, F.V., et al. (2002). Contribution of pneumolysin and autolysin to the pathogenesis of experimental pneumococcal endophthalmitis. Retina 22, 622-632. (Pubitemid 35176078)
39. Nouwens, A.S., Cordwell, S.J., Larsen, M.R., Molloy, M.P., Gillings, M., Willcox, M.D., et al. (2000). Complementing genomics with proteomics: the membrane subproteome of Pseudomonas aeruginosa PAO1. Electrophoresis 21, 3797-3809.
40. Pancholi, V., and Fischetti, V.A. (1998). Alpha-enolase, a novel strong plasmin(ogen) binding protein on the surface of pathogenic streptococci. J Biol Chem 273, 14503-14515. (Pubitemid 28319172)
41. Pancholi, V., Fontan, P., and Jin, H., 2003. Plasminogenmediated group A streptococcal adherence to and pericellular invasion of human pharyngeal cells. Microb Pathog 35, 293-303. (Pubitemid 37346168)
42. Pasini, E.M., Lutz, H.U., Mann, M., and Thomas, A.W. (2010). Red blood cell (RBC) membrane proteomics-Part II: comparative proteomics and RBC patho-physiology. J Proteomics 73, 421-435.
43. Poetsch, A.W., and Wolters D. (2008). Bacterial membrane proteomics. Proteomics 8, 4100-4122.
44. Rabilloud, T. (2009). Membrane proteins and proteomics: love is possible, but so difficult. Electrophoresis 30(Suppl 1), S174-S180.
45. Rodriguez-Ortega, M.J., Norais, N., Bensi, G., Liberatori, S., Capo, S., Mora, M., et al. (2006). Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome. Nat Biotechnol 24, 191-197. (Pubitemid 43221703)
46. Santoni, V., Molloy, M., and Rabilloud, T. (2000). Membrane proteins and proteomics: un amour impossible? Electrophoresis 21, 1054-1070. (Pubitemid 30230772)
47. Schmitt, L., and Tampe, R. (2002). Structure and mechanism of ABC transporters. Curr Opin Struct Biol 12, 754-760. (Pubitemid 36009492)
48. Severin, A., Nickbarg, E., Wooters, J., Quazi, S.A., Matsuka, Y.V., et al. (2007). Proteomic analysis and identification of Streptococcus pyogenes surface-associated proteins. J Bacteriol 189, 1514-1522. (Pubitemid 46446112)
49. Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., et al. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13, 2498-2504. (Pubitemid 37428274)
50. Soualhine, H., Brochu, V., Menard, F., Papadopoulou, B., Weiss, K., Bergeron, M.G., et al. (2005). A proteomic analysis of penicillin resistance in Streptococcus pneumoniae reveals a novel role for PstS, a subunit of the phosphate ABC transporter. Mol Microbiol 58, 1430-1440. (Pubitemid 41705420)
51. Sun, X., Ge, R., Cai, Z., Sun, H., and He, Q.Y. (2009). Iron depletion decreases proliferation and induces apoptosis in a human colonic adenocarcinoma cell line, Caco2. J Inorg Biochem 103, 1074-1081.
52. Sun, X., Ge, F., Xiao, C.L., Yin, X.F., Ge, R., Zhang, L.H., et al. (2010). Phosphoproteomic analysis reveals the multiple roles of phosphorylation in pathogenic bacterium Streptococcus pneumoniae. J Proteome Res 9, 275-282.
53. Von Mering, C., Jensen, L.J., Snel, B., Hooper, S.D., Krupp, M., Foglierini, M., et al. (2005). STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res 33, D433-D437. (Pubitemid 40207910)
54. Von Mering, C., Jensen, L.J., Kuhn, M., Chaffron, S., Doerks, T., Kruger, B., et al. (2007). STRING 7-recent developments in the integration and prediction of protein interactions. Nucleic Acids Res 35, D358-D362. (Pubitemid 46056231)
55. Wang, Y., Cheung, Y.H., Yang, Z., Chiu, J.F., Che, C.M., and He, Q.Y. (2006). Proteomic approach to study the cytotoxicity of dioscin (saponin). Proteomics 6, 2422-2432.
56. Wilkins, J.C., Beighton, D., and Homer, K.A. (2003). Effect of acidic pH on expression of surface-associated proteins of Streptococcus oralis. Appl Environ Microbiol 69, 5290-5296. (Pubitemid 37150753)
57. Zuobi-Hasona, K., and Brady, L.J. (2008). Isolation and solubilization of cellular membrane proteins from bacteria. Methods Mol Biol 425, 287-293.