Genetic similarity analysis in lentil using cross-genera legume sequence tagged microsatellite site markers

Crop Science

Volumn 51, Issue 6, 2011, Pages 2412-2422

  Datta, Subhojit ^a   Tiwari, Saurabh ^b   Kaashyap, Mayank ^a   Gupta, Prasoon P ^a   Choudhury, Partha R ^c   Kumari, Jyoti ^d   Kumar, Shiv ^e  

^a INDIAN INSTITUTE OF PULSES RESEARCH   (India)

^b C S AZAD UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (India)

^c ICAR Indian Institute of Seed Science   (India)

^d INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^e INTERNATIONAL CENTER FOR AGRICULTURAL RESEARCH IN THE DRY AREAS ICARDA   (Syrian Arab Republic)

Author keywords

[No Author keywords available]

Indexed keywords

LENS CULINARIS;

EID: 80053636604     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2010.12.0743     Document Type: Article

References (53)

1. Abdelnoor, R.V., E.G. Barros, and M.A. Moreira. 1995. Determination of genetic diversity within Brazilian soybean germplasm using random amplified polymorphic DNA techniques and comparative analysis with pedigree data. Braz. J. Genet. 18:265-273.
2. Abe, J., D.H. Xu, Y. Suzuki, A. Kanazawa, and Y. Shimamoto. 2003. Soybean germplasm pools in Asia revealed by nuclear SSRs. Theor. Appl. Genet. 106:445-453.
3. Abo-el-Wafa, A., K. Murai, and T. Shimada. 1995. Intra-and inter-specific variations in Lens revealed by RAPD markers. Theor. Appl. Genet. 90:335-340.
4. Ahmad, M., and D.L. McNeil. 1996. Comparison of crossability, RAPD, SDS-PAGE and morphological markers for revealing genetic relationships within and among Lens species. Theor. Appl. Genet. 93:788-793. doi:10.1007/BF00224077
5. Asghar, M.J., G. Abbas, and T.M. Shah. 2010. Study of genetic diversity in some local and exotic lentil (Lens culinaris medik) genotypes. Pak. J. Bot. 42:2681-2690.
6. Blair, M.W., F. Pedraza, H.F. Buendia, E. Gaitan-Solis, S.E. Beebe, P. Gepts, and J. Tohme. 2003. Development of a genomewide anchored microsatellite map for common bean (Phaseolus vulgaris). Theor. Appl. Genet. 107:1362-1374. doi:10.1007/ s00122-003-1398-6
7. Botstein, B., R.L. White, M. Skolnick, and R.W. Davis. 1980. Molecular markers in plant genome analysis. Am. J. Hum. Genet. 32:314-331.
8. Choi, H.K., J.H. Mun, D.J. Kim, H. Zhu, J.M. Baek, J. Mudge, B. Roe, T.N.H. Ellis, J. Doyle, G.B. Kiss, N.D. Young, and D.R. Cook. 2004. Estimating genome conservation between crop and model legume species. Proc. Natl. Acad. Sci. USA 101:15289-15294. doi:10.1073/pnas.0402251101
9. Choudhary, S., N.K. Sethy, B. Shokeen, and S. Bhatia. 2008. Development of chickpea EST-SSR markers and analysis of allelic variation across related species. Theor. Appl. Genet. 118:591-608. doi:10.1007/s00122-008-0923-z
10. Datta, S., M. Kaashyap, and S. Kumar. 2010a. Amplification of chickpea-specific SSR primers in Cajanus species and their validity in diversity analysis. Plant Breed. 129:334-340. doi:10.1111/j.1439-0523.2009.01678.x
11. Datta, S., S. Mahfooz, P. Singh, A.K. Choudhary, F. Singh, and S. Kumar. 2010b. Cross-genera amplification of informative microsatellite markers from common bean and lentil for the assessment of genetic diversity in pigeonpea. Physiol. Mol. Biol. Plants 16:123-134. doi:10.1007/s12298-010-0014-x
12. Dixit, G.P., P.K. Katiyar, B.B. Singh, and S. Kumar. 2009. Lentil varieties in India. All India Coordinated Research Project on MULLaRP, IIPR, Kanpur, India. 13 p.
13. Doyle, J.J., and M.A. Luckow. 2003. The rest of the iceberg: Legume diversity and evolution in a phylogenetic context. Plant Physiol. 131:900-910. doi:10.1104/pp.102.018150
14. Duran, Y., R. Fratini, P. Garcia, and M.P. Vega. 2004. An interspecific genetic map of Lens. Theor. Appl. Genet. 108:1265-1273. doi:10.1007/s00122-003-1542-3
15. Erskine, W. 1997. Lessons for breeders from land races of lentil. Euphytica 93:107-112. doi:10.1023/A:1002939704321
16. Erskine, W., Y. Adham, and L. Holly. 1989. Geographic distribution of variation in quantitative traits in a world lentil collection. Euphytica 43:97-103. doi:10.1007/BF00037901
17. Erskine, W., S. Chandra, M. Chaudhary, I.A. Malik, A. Sarker, B. Sharma, M. Tufail, and M.C. Tyagi. 1998. A bottleneck in lentil: Widening its genetic base in South Asia. Euphytica 101:207-211. doi:10.1023/A:1018306723777
18. Eujayl, I., W. Erskine, B. Bayaa, M. Baum, and E. Pehu. 1998. Fusarium vascular wilt in lentil: Inheritance and identification of DNA markers for resistance. Plant Breed. 117:497-499. doi:10.1111/j.1439-0523.1998.tb01982.x
19. FAOSTAT. 2010. Available at http://faostat.fao.org/site (verified 8 Oct. 2010). FAO, Rome, Italy.
20. Ferguson, M.E., L.D. Robertson, B.V. Ford-Lloyd, H.J. Newbury, and N. Maxted. 1998. Contrasting genetic variation amongst lentil landraces from different geographical origins. Euphytica 102:265-273. doi:10.1023/A:1018331432580
21. Ford, R., E.C.K. Pang, and P.W.J. Taylor. 1997. Diversity analysis and species identification in Lens using PCR generated markers. Euphytica 96:247-255. doi:10.1023/A:1003097600701
22. Gupta, P.K., and R.K. Varshney. 2000. The development and use of microsatellite markers for genetic and plant breeding with emphasis on bread wheat. Euphytica 113:163-185. doi:10.1023/A:1003910819967
23. Gutierrez, M.V., M.C. Vaz Patto, T. Huguet, J.L. Cubero, M.T. Moreno, and A.M. Torres. 2005. Cross-species amplification of Medicago truncatula microsatellites across three major pulse crops. Theor. Appl. Genet. 110:1210-1217. doi:10.1007/ s00122-005-1951-6
24. Hamwieh, A., S.M. Udupa, A. Sarkar, C. Jung, and M. Baum. 2009. Development of new microsatellite markers and their application in the analysis of genetic diversity in lentils. Breed. Sci. 59:77-86. doi:10.1270/jsbbs.59.77
25. Hamwieh, A., S.M. Udupa, W. Choumane, A. Sarker, F. Dreyer, C. Jung, and M. Baum. 2005. A genetic linkage map of Lens sp. based on microsatellite and AFLP markers and the localization of Fusarium vascular wilt resistance. Theor. Appl. Genet. 110:669-677. doi:10.1007/s00122-004-1892-5
26. Havey, M.H., and F.J. Muehlbauer. 1989. Variability for fragment length and phylogenies in lentil. Theor. Appl. Genet. 77:839-843. doi:10.1007/BF00268336
27. Jaccard, P. 1908. Nouvelle recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44:223-270.
28. Kahraman, A., I. Kusmenoglu, N. Ayidn, A. Aydogan, W. Erskine, and F.J. Muehlbauer. 2004. QTL mapping of winter hardiness genes in lentil. Crop Sci. 44:13-22. doi:10.2135/ cropsci2004.0013
29. Kumar, S., S. Gupta, S. Chandra, and B.B. Singh. 2004. How wide is the genetic base of pulse crops. p. 188-210. In M. Ali, B. B. Singh, Shiv Kumar, and Vishwa Dhar (ed.) Pulses in new perspective. ISPRD, Kanpur, India.
30. Ladizinski, D., D. Braun, and F.J. Muehlbauer. 1984. The biological species of the genus Lens. Bot. Gaz. 145:235-261.
31. Pandian, A., R. Ford, and P.W.J. Taylor. 2000. Transferability of sequence tagged microsatellite site (STMS) primers across four major pulses. Plant Mol. Biol. Rep. 18:395a-395h. doi:10.1007/BF02825069
32. Phan, H.T., S.R. Ellwood, J.K. Hane, R. Ford, M. Materne, and R.P. Oliver. 2007. Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris. Theor. Appl. Genet. 114:549-558. doi:10.1007/s00122-006-0455-3
33. Powell, W., G.C. Mackray, and J. Provan. 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1:215-222.
34. Rahman, M.M., A. Sarker, S. Kumar, A. Ali, N.K. Yadav, and L. Rahman. 2009. Breeding for short season environments. p. 121-136. In W. Erskine, F. Muehlbauer, A. Sarker, and B. Sharma (ed.) The lentil: Botany, production and uses. CAB Int., Wallingford, UK.
35. Rahman, M.M., and A. Sarker. 1993. Genetic resources and breeding of lentil in Bangladesh. Lentil in South Asia, Proceedings of the Seminar on Lentils in South Asia, 11-15 Mar. 1991. 236 pp.
36. Reddy, M.R.K., R. Rathour, N. Kumar, P. Katoch, and T.R. Sharma. 2009. Cross-genera legume SSR markers for analysis of genetic diversity in Lens species. Plant Breed. 10.1111/j.1439-0523.2009.01723.x.
37. Rohlf, F.J. 1998. NTSYS-pc: Numerical taxonomy and multivariate analysis system. Version 2.1 Exeter Publications, NY.
38. Sarker, A., and W. Erskine. 2006. Recent developments in the ancient lentils. J. Agric. Sci. Cambridge 144:19-29. doi:10.1017/S0021859605005800
39. Sarker, A., M. Singh, S. Rajaram, and W. Erskine. 2010. Adaptation of small-seeded red lentil (Lens culinaris Medik. Subsp. culinaris) to diverse environments. Crop Sci. 50:1250-1259. doi:10.2135/cropsci2009.06.0342
40. Sharma, S.K., I.K. Dawson, and R. Wauge. 1995. Relationship among cultivated and wild lentils revealed by RAPD analysis. Theor. Appl. Genet. 91:647-651. doi:10.1007/BF00223292
41. Sharma, S.K., M.R. Knox, and T.H.N. Ellis. 1996. AFLP analysis of the diversity and phylogeny of Lens and its comparison with RAPD analysis. Theor. Appl. Genet. 93:751-758. doi:10.1007/BF00224072
42. Simon, C.J., and F.J. Muehlbauer. 1997. Construction of a chickpea linkage map and its comparison with maps of pea and lentil. J. Hered. 88:115-119.
43. Singh, B.B., S.K. Mishra, S. Sardana, and G.P. Dixit. 2006. Lentil and pea. p. 240-254. In B.S. Dhillon, S. Saxena, A. Agarwal and R.K. Tyagi (ed.) Plant genetic resources: Food grain crops. Narosa Publishing House Pvt. Ltd., New Delhi.
44. Sneath, P.H.A., and R.R. Sokal. 1973. Numerical taxonomy: The principles and practice of numerical classification. Freeman and Company, San Francisco.
45. Souframanien, J., and T. Gopalakrishna. 2004. A comparative analysis of genetic diversity in black gram genotypes using RAPD and ISSR markers. Theor. Appl. Genet. 109:1687-1693. doi:10.1007/s00122-004-1797-3
46. Tullu, A., L. Buchwaldt, T. Warkentin, B. Taran, and A. Vandenberg. 2003. Genetics of resistance to anthracnose and identification of AFLP and RAPD markers linked to the resistance gene in PI 320937 germplasm of lentil (Lens culinaris Medik. Subsp. culinaris). Theor. Appl. Genet. 106:428-434.
47. Udupa, S.M., L.D. Robertson, F. Weigand, M. Baum, and G. Kahl. 1999. Allelic variation at (TAA)n microsatellite loci in a world collection of chickpea (Cicer arietinum L.) germplasm. Mol. Gen. Genet. 261:354-363. doi:10.1007/s004380050976
48. Varshney, R.K., A. Graner, and M.E. Sorrells. 2005. Genic microsatellite markers in plants: Features and applications. Trends Biotechnol. 23:48-55. doi:10.1016/j.tibtech.2004.11.005
49. Varshney, R.K., T.J. Close, N.K. Singh, D.A. Hoisington, and D.R. Cook. 2009. Orphan legume crops enter the genomics era! Curr. Opin. Plant Biol. 11:1-9.
50. Weeden, N.F., F.J. Muehlbauer, and G. Ladizinsky. 1992. Extensive conservation of linkage relationships between pea and lentil genetic maps. J. Hered. 83:123-129.
51. Winter, P., T. Pfaff, and S.M. Udupa. 1999. Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome. Mol. Gen. Genet. 262:90-101. doi:10.1007/s004380051063
52. Yap, I., and R.J. Nelson. 1996. WinBoot: A program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. IRRI Discussion Papers Series No. 14. International Rice Research Institute, Manila, Philippines.
53. Zhu, H., H.K. Choi, D.R. Cook, and R.C. Shoemaker. 2005. Bridging model and crop legumes through comparative genomics. Plant Physiol. 137:1189-1196. doi:10.1104/ pp.104.058891