Soybean germplasm pools in Asia revealed by nuclear SSRs

Theoretical and Applied Genetics

Volumn 106, Issue 3, 2003, Pages 445-453

  Abe, J ^a   Xu, D H ^a   Suzuki, Y ^a   Kanazawa, A ^a   Shimamoto, Y ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Diversity; Germplasm pool; Soybean; SSR

Indexed keywords

ENVIRONMENTAL ENGINEERING; PLANTS (BOTANY);

GERMPLASMS;

DNA SEQUENCES;

GENETIC ENGINEERING; NUCLEIC ACIDS;

EMBRYOPHYTA; GLYCINE MAX;

EID: 0038324011     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-1073-3     Document Type: Article

References (33)

1. Benzecri JP (1992) Correspondence analysis handbook. Marcel Dekker, New York
2. Brown-Guedira GL, Thompson JA, Nelson RL, Warburton ML (2000) Evaluation of genetic diversity of soybean introductions and north American ancestors using RAPD and SSR markers. Crop Sci 40:815-823
3. Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, VanToai TT, Lohnes DG, Chung J, Specht JE (1999) An integrated genetic linkage map of the soybean genome. Crop Sci 39:1464-1490
4. Cui Z, Carter TE, Burton JW (2000) Genetic diversity patterns in Chinese soybean cultivars based on coefficient of parentage. Crop Sci 40:1780-1793
5. Diwan N, Cregan PB (1997) Automated sizing of fluorescent-labeled simple sequence repeat markers to assay genetic variation in soybean. Theor Appl Genet 95:723-731
6. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13-15
7. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA data. Genetics 131:479-491
8. Felsenstein J (1995) PHYLIP (Phylogeny inference package) version 3.57c. University of Washington Press, Seattle
9. Fujita R, Ohara M, Okazaki K, Shimamoto Y (1997) The extent of natural cross-pollination wild soybean (Glycine soja). J Hered 88:124-128
10. Griffin JD, Palmer RG (1995) Variability of thirteen isozyme loci in the USDA soybean germplasm collections. Crop Sci 35:897-904
11. Han O, Abe J, Shimamoto Y (1999) Genetic diversity of soybean landraces in Korea. Korean J Crop Sci 44:256-262
12. Hayashi C (1956) Theory and examples of quantification III (in Japanese). Proc Institute Statistical Math, Tokyo 4:19-30
13. Hirata T, Abe J, Shimamoto Y (1999) Genetic structure of the Japanese soybean population. Genet Resour Crop Evol 46:441-453
14. Hymowitz T, Kaizuma N (1979) Dissemination of soybean (Glycine max): seed protein electrophoresis profiles among Japanese cultivar. Econ Bot 33:311-319
15. Hymowitz T, Kaizuma N (1981) Soybean seed protein electrophoresis profiles from 15 Asian countries or regions: hypotheses on paths of dissemination of soybeans from China. Econ Bot 35:10-23
16. Hymowitz T, Newell CA (1981) Taxonomy of the genus Glycine, domestication and uses of soybeans. Econ Bot 35:272-288
17. Keim P, Shoemaker RC, Palmer RG (1989) Restriction fragment length polymorphism diversity in soybean. Theor Appl Genet 77:786-792
18. Kisha TJ, Diers BW, Hoyt JM, Sneller CH (1998) Genetic diversity among soybean plant introductions and north American germplasm. Crop Sci 38:1669-1680
19. Li Z, Nelson RL (2001) Genetic diversity among soybean accessions from three countries measured by RAPDs. Crop Sci 41:1337-1347
20. Li Z, Qiu L, Thompson JA, Welsh MM, Nelson RL (2001) Molecular genetic analysis of U.S. and Chinese soybean ancestral lines. Crop Sci 41:1330-1336
21. Maughan PJ, Saghai Maroof MA, Buss GR (1995) Microsatellite and amplified sequence length polymorphisms in cultivated and wild soybean. Genome 38:715-723
22. Minch E, Ruiz-Linares A, Goldstein D, Feldman M, Cavalli-Sforza LL (1997) Microsat (version 〈WHATEVER〉): a computer program for calculating various statistics on microsatellite allele data. WWW: http://hpgl.stanford.edu/projects/microsat/
23. Narvel JM, Fehr WR, Chu WC, Grant D, Shoemaker RC (2000) Simple sequence repeat diversity among soybean plant introductions and elite genotypes. Crop Sci 40:1452-1458
24. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
25. Perry MC, McIntosh MS, Stoner AK (1991) Geographical patterns of variation in the USDA soybean germplasm collection. II. Allozyme frequencies. Crop Sci 31:1356-1360
26. Powell W, Morgante M, Doyle JJ, McNicol JW, Tingey SV, Rafalski AJ (1996) Genepool variation in the genus Glycine subgenus Soja revealed by polymorphic nuclear and chloroplast microsatellites. Genetics 144:793-803
27. Sekizuka S, Yoshiyama T (1960) Studies on the native wild grasses for fodder. IV. Crop-scientific studies on wild species of Glycine soja in Japan (in Japanese with an English abstract). J Kantou-Tosan Agric Exp Station 15:57-73
28. Shimamoto Y (2001) Polymorphism and phylogeny of soybean based on chloroplast and mitochondrial DNA analysis. Japan Agric Res Quarterly 35:79-84
29. Song QJ, Quigley CV, Nelson RL, Carter TE, Boerma HR, Strachan JL, Cregan PB (1999) A selected set of trinucletide simple sequence repeat markers for soybean cultivar identification. Plant Var Seeds 12:207-220
30. Wang Y, Li F, Chang R (1986) The distribution of the alleles of the Ti and Sp1 loci among Chinese soybean (G. max) cultivars by seed protein electrophoresis (in Chinese with an English abstract). Acta Agron Sinica 12:31-37
31. Xu DH, Abe J, Gai JY, and Shimamoto Y (2002) Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: evidence for multiple origins of cultivated soybean. Theor Appl Genet (in press)
32. Zheng HY, Chen HD (1980) A preliminary study of the resources of wild soybean in Jilin province (in Chinese with an English abstract). Sci Agric Sinica 13:26-32
33. Zhou X, Carter TE, Cui Z, Miyazaki S, Burton JW (2000) Genetic base of Japanese soybean cultivars released during 1950 to 1988. Crop Sci 40:1794-1802