The purine-rich DNA-binding protein OsPurα participates in the regulation of the rice sucrose synthase 1 gene expression

Physiologia Plantarum

Volumn 143, Issue 3, 2011, Pages 219-234

  Chang, Jui Che ^a   Liao, Yi Chun ^a   Yang, Chien Chih ^a   Wang, Ai Yu ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLUCURONIDASE; DNA BINDING PROTEIN; GLUCOSYLTRANSFERASE; OSGRP1 PROTEIN, ORYZA SATIVA; SUCROSE; SUCROSE SYNTHASE; VEGETABLE PROTEIN;

ARTICLE; BIOSYNTHESIS; CHEMICAL STRUCTURE; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; REPORTER GENE; RICE; SEQUENCE ANALYSIS; TRANSGENIC PLANT;

DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, PLANT; GENES, REPORTER; GLUCOSYLTRANSFERASES; GLUCURONIDASE; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; ORYZA SATIVA; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; SEQUENCE ANALYSIS, PROTEIN; SUCROSE;

ARABIDOPSIS; CAULIFLOWER MOSAIC VIRUS; ESCHERICHIA COLI;

EID: 80053622233     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2011.01501.x     Document Type: Article

References (83)

1. Angeles-Núñez JG, Tiessen A (2010) Arabidopsis sucrose synthase 2 and 3 modulate metabolic homeostasis and direct carbon towards starch synthesis in developing seeds. Planta 232: 701-718
2. Baier MC, Barsch A, Küster H, Hohnjec N (2007) Antisense repression of the Medicago truncatula nodule-enhanced sucrose synthase leads to a handicapped nitrogen fixation mirrored by specific alterations in the symbiotic transcriptome and metabolome. Plant Physiol 145: 1600-1618
3. Bart R, Chern M, Park CJ, Bartley L, Ronald PC (2006) A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts. Plant Methods 2: 13-21
4. Baud S, Vaultier MN, Rochat C (2004) Structure and expression profile of the sucrose synthase multigene family in Arabidopsis. J Exp Bot 55: 397-409
5. Bieniawska Z, Barratt DHP, Garlick AP, Thole V, Kruger NJ, Martin C, Zrenner R, Smith AM (2007) Analysis of the sucrose synthase gene family in Arabidopsis. Plant J 49: 810-828
6. Blom N, Gammeltoft S, Brunak S (1999) Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 294: 1351-1362.
7. Carlson SJ, Chourey PS, Helentjaris T, Datta R (2002) Gene expression studies on developing kernels of maize sucrose synthase (SuSy) mutants show evidence for a third SuSy gene. Plant Mol Biol 49: 15-29
8. Chiu Wl, Niwa Y, Zeng W, Hirano T, Kobayashi H, Sheen J (1996) Engineered GFP as a vital reporter in plants. Curr Biol 6: 325-330
9. Chourey PS, Taliercio EW, Kane EJ (1991) Tissue-specific expression and anaerobically Induced posttranscriptional modulation of sucrose synthase genes in Sorghum bicolor M. Plant Physiol 96: 485-490
10. Ciereszko I, Kleczkowski LA (2002) Glucose and mannose regulate the expression of a major sucrose synthase gene in Arabidopsis via hexokinase-dependent mechanisms. Plant Physiol Biochem 40: 907-911
11. Clancy M, Hannah LC (2002) Splicing of the maize Sh1 first intron Is essential for enhancement of gene expression, and a T-rich motif increases expression without affecting splicing. Plant Physiol 130: 918-929
12. Crespi MD, Zabaleta EJ, Pontis HG, Salerno GL (1991) Sucrose synthase expression during cold acclimation in wheat. Plant Physiol 96: 887-891
13. Déjardin A, Sokolov LN, Kleczkowski LA (1999) Sugar/osmoticum levels modulate differential abscisic acid-independent expression of two stress-responsive sucrose synthase genes in Arabidopsis. Biochem J 344: 503-509
14. Echt CS, Chourey PS (1985) A comparison of two sucrose synthetase isozymes from normal and shrunken-1 maize. Plant Physiol 79: 530-536
15. Feng Q, Zhang YJ, Hao P, Wang SY, Fu G, Huang YC, Li Y, Zhu JJ, Liu YL, Hu X, Jia PX, Zhang Y, Zhao Q, Ying K, Yu SL, Tang YS, Weng QJ, Zhang L, Lu Y, Mu J, Lu YQ, Zhang LS, Yu Z, Fan DL, Liu XH, Lu TT, Li C, Wu YR, Sun TG, Lei HY, Li T, Hu H, Guan JP, Wu M, Zhang RQ, Zhou B, Chen ZH, Chen L, Jin ZQ, Wang R, Yin HF, Cai Z, Ren SX, Lv G, Gu WY, Zhu GF, Tu YF, Jia J, Zhang Y, Chen J, Kang H, Chen XY, Shao CY, Sun Y, Hu QP, Zhang XL, Zhang W, Wang LJ, Ding CW, Sheng HH, Gu JL, Chen ST, Ni L, Zhu FH, Chen W, Lan LF, Lai Y, Cheng ZK, Gu MH, Jiang JM, Li JY, Hong GF, Xue YB, Han B (2002) Sequence and analysis of rice chromosome 4. Nature 420: 316-320
16. Frommer WB, Starlinger P (1988) DNase I hypersensitive sites in the 5'-region of the maize Shrunken gene in nuclei from different organs. Mol Gen Genet 212: 351-359
17. Fu HY, Park WD (1995) Sink- and vascular-associated sucrose synthase functions are encoded by different gene classes in potato. Plant Cell 7: 1369-1385
18. Fu HY, Kim SY, Park WD (1995a) High-level tuber expression and sucrose inducibility of a potato Sus4 sucrose synthase gene require 5'-flanking and 3'-flanking sequences and the leader intron. Plant Cell 7: 1387-1394
19. Fu HY, Kim SY, Park WD (1995b) A potato Sus3 sucrose synthase gene contains a context-dependent 3' element and a leader intron with both positive and negative tissue-specific effects. Plant Cell 7: 1395-1403
20. Gallia GL, Johnson EM, Khalili K (2000) Purα: a multifunctional single-stranded DNA- and RNA-binding protein. Nucleic Acids Res 28: 3197-3205
21. Gaspin C, Rami JF, Lescure B (2010) Distribution of short interstitial telomere motifs in two plant genomes: putative origin and function. BMC Plant Biol 10: 283
22. Geisler-Lee J, Geisler M, Coutinho PM, Segerman B, Nishikubo N, Takahashi J, Aspeborg H, Djerbi S, Master E, Andersson-Gunneras S, Sundberg B, Karpinski S, Teeri TT, Kleczkowski LA, Henrissat B, Mellerowicz EJ (2006) Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol 140: 946-962
23. Godt DE, Riegel A, Roitsch T (1995) Regulation of sucrose synthase expression in Chenopodium rubrum: characterization of sugar induced expression in photoautotrophic suspension cultures and sink tissue specific expression in plants. Plant physiol 146: 231-238
24. Gordon AJ, Minchin FR, James CL, Komina O (1999) Sucrose synthase in legume nodules is essential for nitrogen fixation. Plant Physiol 120: 867-877
25. Gouet P, Courcelle E, Stuart DI, Metoz F (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15: 305-308
26. Graebsch A, Roche S, Niessing D (2009) X-ray structure of Pur-α reveals a Whirly-like fold and an unusual nucleic-acid binding surface. Proc Natl Acad Sci USA 106: 18521-18526
27. Grierson C, Du J-S, De Torres Zabala M, Beggs K, Smith C, Holdsworth M, Bevan M (1994) Separate cis sequences and trans factors direct metabolic and developmental regulation of a potato tuber storage protein gene. Plant J 5: 815-826
28. Haas S, Thatikunta P, Steplewski A, Johnson EM, Khalili K, Amini S (1995) A 39-kD DNA-binding protein from mouse brain stimulates transcription of myelin basic protein gene in oligodendrocytic cells. J Cell Biol 130: 1171-1179
29. Haigler CH, Ivanova-Datcheva M, Hogan PS, Salnikov VV, Hwang S, Martin K, Delmer DP (2001) Carbon partitioning to cellulose synthesis. Plant Mol Biol 47: 29-51
30. Halford NG, Hey S, Jhurreea D, Laurie S, McKibbin RS, Paul M, Zhang Y (2003) Metabolic signalling and carbon partitioning: role of Snf1-related (SnRK1) protein kinase. J Exp Bot 54: 467-475
31. Hirose T, Scofield GN, Terao T (2008) An expression analysis profile for the entire sucrose synthase gene family in rice. Plant Sci 174: 534-543
32. Horst I, Welham T, Kelly S, Kaneko T, Sato S, Tabata S, Parniske M, Wang TL (2007) TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase. Plant Physiol 144: 806-820
33. Huang JW, Chen JT, Yu WP, Shyur LF, Wang AY, Sung HY, Lee PD, Su JC (1996) Complete structures of three rice sucrose synthase isogenes and differential regulation of their expressions. Biosci Biotechnol Biochem 60: 233-239
34. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907
35. Jones AM, MacLean D, Studholme DJ, Serna-Sanz A, Andreasson E, Rathjen JP, Peck SC (2009) Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J Proteomics 72: 439-451
36. Kelm RJ, Elder PK, Strauch AR, Getz MJ (1997) Sequence of cDNAs encoding components of vascular actin single-stranded DNA-binding factor 2 establish identity to Purα and Purβ. J Biol Chem 272: 26727-26733
37. Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y, Yasunishi A (2003) Collection, mapping, and annotation of over 28, 000 cDNA clones from japonica rice. Science 301: 376-379
38. Kleczkowski LA, Kunz S, Wilczynska M (2010) Mechanisms of UDP-glucose synthesis in plants. Crit Rev Plant Sci 29: 191-203
39. Klinge B, Lange T, Werr W (1997) The IBP genes of maize are expressed in non-meristematic, elongating cells of the seedling and in abortive floral organs. Mol Gen Genet 255: 248-257
40. Koch KE (1996) Carbohydrate-modulated gene expression in plants. Annu Rev Plant Physiol Plant Mol Biol 47: 509-540
41. Koch KE (2004) Sucrose metabolism: regulatory mechanisms and pivotal roles in sugar sensing and plant development. Curr Opin Plant Biol 7: 235-246
42. Koch KE, Nolte KD, Duke ER, McCarty DR, Avigne WT (1992) Sugar levels modulate differential expression of maize sucrose synthase genes. Plant Cell 4: 59-69
43. Komatsu A, Moriguchi T, Koyama K, Omura M, Akihama T (2002) Analysis of sucrose synthase genes in citrus suggests different roles and phylogenetic relationships. J Exp Bot 53: 61-71
44. Kosugi S, Ohashi Y, Nakajima K, Arai Y (1990) An improved assay for β-glucuronidase in transformed cells: methanol almost completely suppresses a putative endogenous β-glucuronidase activity. Plant Sci 70: 133-140
45. Liao YC, Wang AY (2003) Sugar-modulated gene expression of sucrose synthase in suspension-cultured cells of rice. Physiol Plant 118: 319-327
46. Lu CA, Lim EK, Yu SM (1998) Sugar response sequence in the promoter of a rice α-amylase gene serves as a transcriptional enhancer. J Biol Chem 273: 10120-10131
47. Lugert T, Werr W (1994) A novel DNA-binding domain in the Shrunken initiator-binding protein (IBP1). Plant Mol Biol 25: 493-506
48. Maas C, Schaal S, Werr W (1990) A feedback control element near the transcription start site of the maize Shrunken gene determines promoter activity. EMBO J 9: 3447-3452
49. Maas C, Laufs J, Grant S, Korfhage C, Werr W (1991) The combination of a novel stimulatory element in the first exon of the maize Shrunken-1 gene with the following intron 1 enhances reporter gene expression up to 1000-fold. Plant Mol Biol 16: 199-207
50. Maraña C, García-Olmedo F, Carbonero P (1990) Differential expression of two types of sucrose synthase-encoding genes in wheat in response to anaerobiosis, cold shock and light. Gene 88: 167-172
51. Martin T, Frommer WB, Salanoubat M, Willmitzer L (1993) Expression of an Arabidopsis sucrose synthase gene indicates a role in metabolization of sucrose both during phloem loading and in sink organs. Plant J 4: 367-377
52. Mikami K, Tabata T, Kawata T, Nakayama T, Iwabuchi M (1987) Nuclear protein(s) binding to the conserved DNA hexameric sequence postulated to regulate transcription of wheat histone genes. FEBS Lett 223: 273-278
53. Mitsunaga SI, Rodriguez RL, Yamaguchi J (1994) Sequence-specific interactions of a nuclear protein factor with the promoter region of a rice gene for α-amylase, RAmy3D. Nucleic Acids Res 22: 1948-1953
54. Nolte KD, Koch KE (1993) Companion-cell specific localization of sucrose synthase in zones of phloem loading and unloading. Plant Physiol 101: 899-905
55. Pozueta-Romero J, Perata P, Akazawa T (1999) Sucrose-starch conversion in heterotrophic tissues of plants. Crit Rev Plant Sci 18: 489-525
56. Rasmussen TB, Donaldson IA (2006) Investigation of the endosperm-specific sucrose synthase promoter from rice using transient expression of reporter genes in guar seed tissue. Plant Cell Rep 25: 1035-1042
57. Revzin A (1989) Gel-electrophoresis assays for DNA-protein interactions. Biotechniques 7: 346-355
58. Rossignol P, Stevens R, Perennes C, Jasinski S, Cella R, Tremousaygue D, Bergounioux C (2002) AtE2F-a and AtDP-a, members of the E2F family of transcription factors, induce Arabidopsis leaf cells to re-enter S phase. Mol Genet Genomics 266: 995-1003
59. Ruan MB, Liao WB, Zhang XC, Yu XL, Peng M (2009) Analysis of the cotton sucrose synthase 3 (Sus3) promoter and first intron in transgenic Arabidopsis. Plant Sci 176: 342-351
60. Sadakata T, Kuo CH, Ichikawa H, Nishikawa E, Niu SY, Kumamaru E, Miki N (2000) Purα, a single-stranded DNA binding protein, suppresses the enhancer activity of cAMP response element (CRE). Mol Brain Res 77: 47-54
61. Saha P, Chakraborti D, Sarkar A, Dutta I, Basu D, Das S (2007) Characterization of vascular-specific RSs1 and rolC promoters for their utilization in engineering plants to develop resistance against hemipteran insect pests. Planta 226: 429-442
62. Salanoubat M, Belliard G (1989) The steady-state level of potato sucrose synthase mRNA is dependent on wounding, anaerobiosis and sucrose concentration. Gene 84: 181-185
63. Shaw JR, Ferl RJ, Baier J, St Clair D, Carson C, McCarty DR, Hannah LC (1994) Structural features of the maize sus1 gene and protein. Plant Physiol 106: 1659-1665
64. Shi Y, Wang MB, Powell KS, Vandamme E, Hilder VA, Gatehouse AMR, Boulter D, Gatehouse JA (1994) Use of the rice sucrose synthase-1 promoter to direct phloem-specific expression of β-glucuronidase and snowdrop lectin genes in transgenic tobacco plants. J Exp Bot 45: 623-631
65. Shimotai Y, Minami H, Saitoh Y, Onodera Y, Mishima Y, Kelm RJ Jr, Tsutsumi K-i (2006) A binding site for Purα and Purβ is structurally unstable and is required for replication in vivo from the rat aldolase B origin. Biochem Biophys Res Commun 340: 517-525
66. Silvente S, Camas A, Lara M (2003) Heterogeneity of sucrose synthase genes in bean (Phaseolus vulgaris L.): evidence for a nodule-enhanced sucrose synthase gene. J Exp Bot 54: 749-755
67. Siu FKY, Lee LTO, Chow BKC (2008) Southwestern blotting in investigating transcriptional regulation. Nat Protoc 3: 51-58
68. Sturm A, Tang G-Q (1999) The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning. Trends Plant Sci 4: 401-407
69. Subbaiah CC, Palaniappan A, Duncan K, Rhoads DM, Huber SC, Sachs MM (2006) Mitochondrial localization and putative signaling function of sucrose synthase in maize. J Biol Chem 281: 15625-15635
70. Sun S, Stoflet ES, Cogan JG, Strauch AR, Getz MJ (1995) Negative regulation of the vascular smooth-muscle α-actin gene in fibroblasts and myoblasts: disruption of enhancer function by sequence-specific single-stranded-DNA-binding proteins. Mol Cell Biol 15: 2429-2436
71. Trémousaygue D, Manevski A, Bardet C, Lescure N, Lescure B (1999) Plant interstitial telomere motifs participate in the control of gene expression in root meristems. Plant J 20: 553-561
72. Trémousaygue D, Garnier L, Bardet C, Dabos P, Hervé C, Lescure B (2003) Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells. Plant J 33: 957-966
73. Vain P, McMullen MD, Finer JJ (1993) Osmotic treatment enhances particle bombardment-mediated transient and stable transformation of maize. Plant Cell Rep 12: 84-88
74. Vasil V, Clancy M, Ferl RJ, Vasil IK, Hannah LC (1989) Increased gene expression by the first intron of maize shrunken-1 locus in grass species. Plant Physiol 91: 1575-1579
75. Wächter R, Langhans M, Aloni R, Gotz S, Weilmunster A, Koops A, Temguia L, Mistrik I, Pavlovkin J, Rascher U, Schwalm K, Koch KE, Ullrich CI (2003) Vascularization, high-volume solution flow, and localized roles for enzymes of sucrose metabolism during tumorigenesis by Agrobacterium tumefaciens. Plant Physiol 133: 1024-1037
76. Werr W, Springer B, Schürmann J, Bellmann R (1988) Multiple interactions between nuclear proteins of Zea mays and the promoter of the Shrunken gene. Mol Gen Genet 212: 342-350
77. White MK, Johnson EM, Khalili K (2009) Multiple roles for Purα in cellular and viral regulation. Cell Cycle 8: 1-7
78. Winter H, Huber SC (2000) Regulation of sucrose metabolism in higher plants: Localization and regulation of activity of key enzymes. Crit Rev Plant Sci 19: 31-67
79. Yamamoto A, Kagaya Y, Toyoshima R, Kagaya M, Takeda S, Hattori T (2009) Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Plant J 58: 843-856
80. Yang NS, Russell D (1990) Maize sucrose synthase-1 promoter directs phloem cell-specific expression of Gus gene in transgenic tobacco plants. Proc Natl Acad Sci USA 87: 4144-4148
81. Yu WP, Wang AY, Juang RH, Sung HY, Su JC (1992) Isolation and sequences of rice sucrose synthase cDNA and genomic DNA. Plant Mol Biol 18: 139-142
82. Zambrano N, DeRenzis S, Minopoli G, Faraonio R, Donini V, Scaloni A, Cimino F, Russo T (1997) DNA-binding protein Purα and transcription factor YY1 function as transcription activators of the neuron-specific FE65 gene promoter. Biochem J 328: 293-300
83. Zeng Y, Wu Y, Avigne WT, Koch KE (1998) Differential regulation of sugar-sensitive sucrose synthases by hypoxia and anoxia indicate complementary transcriptional and posttranscriptional responses. Plant Physiol 116: 1573-1583