메뉴 건너뛰기




Volumn 26, Issue 7, 2010, Pages 932-938

SBRML: A markup language for associating systems biology data with models

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPUTER PROGRAM; DNA MICROARRAY; FACTUAL DATABASE; METHODOLOGY; SYSTEMS BIOLOGY;

EID: 77951953604     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq069     Document Type: Article
Times cited : (49)

References (24)
  • 1
    • 33845474497 scopus 로고    scopus 로고
    • Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action
    • Angell, S. et al. (2006) Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action. Chem. Biol., 13, 1349-1359.
    • (2006) Chem. Biol. , vol.13 , pp. 1349-1359
    • Angell, S.1
  • 2
    • 77951972317 scopus 로고    scopus 로고
    • BioPAX-biological pathways exchange language
    • BioPAX Working Group, Level 3, Release Candidate 3 (Version 0.92) Documentation. Available at
    • BioPAX Working Group (2008) BioPAX-biological pathways exchange language. Level 3, Release Candidate 3 (Version 0.92) Documentation. Available at http://www.biopax.org/release/biopax-level3-documentation.pdf.
    • (2008)
  • 4
    • 0003551091 scopus 로고    scopus 로고
    • (third edition), W3C recommendation 26 November 2008. Available at
    • Bray, T. et al. (2008) Extensible markup language (XML) 1.0 (third edition), W3C recommendation26November2008.Availableathttp://www.w3.org/TR/REC-xml.
    • (2008) Extensible markup language (XML) 1.0
    • Bray, T.1
  • 5
    • 34247630099 scopus 로고    scopus 로고
    • Growth control of the eukaryote cell: a systems biology study in yeast
    • Castrillo, J.I. et al. (2007) Growth control of the eukaryote cell: a systems biology study in yeast. J. Biol., 6, 4.
    • (2007) J. Biol. , vol.6 , pp. 4
    • Castrillo, J.I.1
  • 6
    • 0345688035 scopus 로고    scopus 로고
    • A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana
    • Curien, G. et al. (2003) A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana. Eur. J. Biochem., 270, 4615-4627.
    • (2003) Eur. J. Biochem. , vol.270 , pp. 4615-4627
    • Curien, G.1
  • 7
    • 9444266171 scopus 로고    scopus 로고
    • CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
    • Funahashi, A. et al. (2003) CellDesigner: a process diagram editor for gene-regulatory and biochemical networks. Biosilico, 1, 159-162.
    • (2003) Biosilico , vol.1 , pp. 159-162
    • Funahashi, A.1
  • 8
    • 53749085229 scopus 로고    scopus 로고
    • A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
    • Herrgård, M.J. et al. (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. Biotechnol., 26, 1155-1160.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1155-1160
    • Herrgård, M.J.1
  • 9
    • 33845368513 scopus 로고    scopus 로고
    • COPASI: a COmplex PAthway SImulator
    • Hoops, S. et al. (2006) COPASI: a COmplex PAthway SImulator. Bioinformatics, 22, 3067-3074.
    • (2006) Bioinformatics , vol.22 , pp. 3067-3074
    • Hoops, S.1
  • 10
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
    • Hucka, M. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
    • (2003) Bioinformatics , vol.19 , pp. 524-531
    • Hucka, M.1
  • 11
    • 35148889036 scopus 로고    scopus 로고
    • The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
    • Jones, A.R. et al. (2007) The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat. Biotechnol., 25, 1127-1133.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1127-1133
    • Jones, A.R.1
  • 12
    • 33751356224 scopus 로고    scopus 로고
    • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    • Kell, D.B. (2006) Systems biology, metabolic modelling and metabolomics in drug discovery and development. Drug Discov. Today, 11, 1085-1092.
    • (2006) Drug Discov. Today , vol.11 , pp. 1085-1092
    • Kell, D.B.1
  • 13
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: a brief overview
    • Kitano, H. (2002) Systems biology: a brief overview. Science, 295, 1662-1664.
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 14
    • 33745619814 scopus 로고    scopus 로고
    • Graph-based analysis and visualization of experimental results with ONDEX
    • Kohler, J. et al. (2006) Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics, 22, 1383-1390.
    • (2006) Bioinformatics , vol.22 , pp. 1383-1390
    • Kohler, J.1
  • 15
    • 57049184135 scopus 로고    scopus 로고
    • SED-ML-An XMLFormat for the Implementation of the MIASE Guidelines
    • Heiner, M. and Uhrmacher, A.M. (eds), Springer, Berlin/Heidelberg
    • Köhn, D. and Le Novére, N. (2008) SED-ML-An XMLFormat for the Implementation of the MIASE Guidelines. In Heiner, M. and Uhrmacher, A.M. (eds) Vol. 5307 of Lecture Notes in Bioinformatics. Springer, Berlin/Heidelberg, pp. 176-190.
    • (2008) Lecture Notes in Bioinformatics , vol.5307 , pp. 176-190
    • Köhn, D.1    Le Novére, N.2
  • 16
    • 40349100409 scopus 로고    scopus 로고
    • MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology
    • Laibe, C. and Le Novére, N. (2007) MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology. BMC Systems Biol., 1, 58.
    • (2007) BMC Systems Biol. , vol.1 , pp. 58
    • Laibe, C.1    Le Novére, N.2
  • 17
    • 33644877164 scopus 로고    scopus 로고
    • BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
    • Le Novére, N. et al. (2006) BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res., 34, D689-D691.
    • (2006) Nucleic Acids Res. , vol.34
    • Le Novére, N.1
  • 18
    • 28644433993 scopus 로고    scopus 로고
    • Minimum information requested in the annotation of biochemical models (MIRIAM)
    • Le Novére, N. et al. (2005) Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol., 23, 1509-1515.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1509-1515
    • Le Novére, N.1
  • 19
    • 0034828640 scopus 로고    scopus 로고
    • In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae
    • Martins, A.M. et al. (2001) In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae. Eur. J. Biochem., 268, 3930-3936.
    • (2001) Eur. J. Biochem. , vol.268 , pp. 3930-3936
    • Martins, A.M.1
  • 20
    • 54049114302 scopus 로고    scopus 로고
    • Virtual cell modelling and simulation software environment
    • Moraru, I.I. et al. (2008) Virtual cell modelling and simulation software environment. IET Syst. Biol., 2, 352-362.
    • (2008) IET Syst. Biol. , vol.2 , pp. 352-362
    • Moraru, I.I.1
  • 21
    • 4544344218 scopus 로고    scopus 로고
    • Web-based kinetic modelling using JWS online
    • Olivier, B.G. and Snoep, J.L. (2004) Web-based kinetic modelling using JWS online. Bioinformatics, 20, 2143-2144.
    • (2004) Bioinformatics , vol.20 , pp. 2143-2144
    • Olivier, B.G.1    Snoep, J.L.2
  • 22
    • 0003683075 scopus 로고    scopus 로고
    • Object Management Group, V2.1.2. Available at
    • Object Management Group (2007) Unified Modeling Language, Infrastructure, V2.1.2. Available at http://www.omg.org/spec/UML/2.1.2/Infrastructure/PDF.
    • (2007) Unified Modeling Language, Infrastructure
  • 23
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 24
    • 0037163144 scopus 로고    scopus 로고
    • Design and implementation of microarray gene expression markup language (MAGE-ML)
    • research0046.1-research0046.9
    • Spellman, P.T. et al. (2002) Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol., 3, research0046.1-0046.9.
    • (2002) Genome Biol. , vol.3
    • Spellman, P.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.