-
3
-
-
0026624977
-
-
10.1146/annurev.bi.61.070192.001215
-
R. Schleif, Annu. Rev. Biochem. 61, 199 (1992). 10.1146/annurev.bi.61. 070192.001215
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 199
-
-
Schleif, R.1
-
4
-
-
35448944463
-
Colloidal particle motion as a diagnostic of DNA conformational transitions
-
DOI 10.1016/j.cocis.2007.07.015, PII S1359029407000854
-
P. C. Nelson, Curr. Opin. Colloid Interface Sci. 12, 307 (2007). 10.1016/j.cocis.2007.07.015 (Pubitemid 47626064)
-
(2007)
Current Opinion in Colloid and Interface Science
, vol.12
, Issue.6
, pp. 307-313
-
-
Nelson, P.C.1
-
6
-
-
18744391399
-
Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation
-
DOI 10.1073/pnas.0409387102
-
E. Villa, A. Balaeff, and K. Schulten, Proc. Natl. Acad. Sci. U.S.A. 102, 6783 (2005). 10.1073/pnas.0409387102 (Pubitemid 40675393)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.19
, pp. 6783-6788
-
-
Villa, E.1
Balaeff, A.2
Schulten, K.3
-
7
-
-
33745595880
-
Modeling the Lac repressor-operator assembly: The influence of DNA looping on Lac repressor conformation
-
DOI 10.1073/pnas.0603557103
-
D. Swigon, B. D. Coleman, and W. K. Olson, Proc. Natl. Acad. Sci. U.S.A. 103, 9879 (2006). 10.1073/pnas.0603557103 (Pubitemid 43993591)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.26
, pp. 9879-9884
-
-
Swigon, D.1
Coleman, B.D.2
Olson, W.K.3
-
8
-
-
57749209893
-
-
10.1080/10409230802528488
-
M. S. Luijsterburg, M. F. White, R. van Driel, and R. T. Dame, Crit. Rev. Biochem. Mol. Biol. 43, 393 (2008). 10.1080/10409230802528488
-
(2008)
Crit. Rev. Biochem. Mol. Biol.
, vol.43
, pp. 393
-
-
Luijsterburg, M.S.1
White, M.F.2
Van Driel, R.3
Dame, R.T.4
-
9
-
-
85035225636
-
-
10.1103/PhysRevE.68.011905
-
J. Yan and J. F. Marko, Phys. Rev. E 68, 011905 (2003). 10.1103/PhysRevE.68.011905
-
(2003)
Phys. Rev. e
, vol.68
, pp. 011905
-
-
Yan, J.1
Marko, J.F.2
-
10
-
-
33745188049
-
-
10.1103/PhysRevLett.96.238103
-
J. M. G. Vilar and L. Saiz, Phys. Rev. Lett. 96, 238103 (2006). 10.1103/PhysRevLett.96.238103
-
(2006)
Phys. Rev. Lett.
, vol.96
, pp. 238103
-
-
Vilar, J.M.G.1
Saiz, L.2
-
14
-
-
33751098486
-
Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
-
DOI 10.1038/nature05283, PII NATURE05283
-
R. T. Dame, C. Noom, and G. J. L. Wuite, Nature 444, 387 (2006). 10.1038/nature05283 (Pubitemid 44764116)
-
(2006)
Nature
, vol.444
, Issue.7117
, pp. 387-390
-
-
Dame, R.T.1
Noom, M.C.2
Wuite, G.J.L.3
-
15
-
-
0034072251
-
Oligomerization of the chromatin-structuring protein H-NS
-
DOI 10.1046/j.1365-2958.2000.01917.x
-
C. P. Smyth, T. Lundbck, D. Renzoni, G. Silligardi, R. Beavil, M. Layton, J. M. Sidebotham, J. C. D. Hinton, P. C. Driscoll, C. F. Higgins, and J. E. Ladbury, Mol. Microbiol. 36, 962 (2000). 10.1046/j.1365-2958.2000.01917.x (Pubitemid 30326540)
-
(2000)
Molecular Microbiology
, vol.36
, Issue.4
, pp. 962-972
-
-
Smyth, C.P.1
Lundback, T.2
Renzoni, D.3
Siligardi, G.4
Beavil, R.5
Layton, M.6
Sidebotham, J.M.7
Hinton, J.C.D.8
Driscoll, P.C.9
Higgins, C.F.10
Ladbury, J.E.11
-
16
-
-
35549009343
-
High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes
-
DOI 10.1093/nar/gkm712
-
B. Lang, N. Blot, E. Bouffartigues, M. Buckle, M. Geertz, C. O. Gualerzi, R. Mavathur, G. Muskhelishvili, C. L. Pon, S. Rimsky, S. Stella, M. M. Badu, and A. Travers, Nucleic Acids Res. 35, 6330 (2007). 10.1093/nar/gkm712 (Pubitemid 350018593)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.18
, pp. 6330-6337
-
-
Lang, B.1
Blot, N.2
Bouffartigues, E.3
Buckle, M.4
Geertz, M.5
Gualerzi, C.O.6
Mavathur, R.7
Muskhelishvili, G.8
Pon, C.L.9
Rimsky, S.10
Stella, S.11
Babu, M.M.12
Travers, A.13
-
17
-
-
70450148398
-
-
10.1074/jbc.M109.044313
-
M. Sette, R. Spurio, E. Trotta, C. Brandi, C. L. Pon, G. Barbato, R. Boelens, and C. O. Gulaerzi, J. Biol. Chem. 284, 30453 (2009). 10.1074/jbc.M109.044313
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 30453
-
-
Sette, M.1
Spurio, R.2
Trotta, E.3
Brandi, C.4
Pon, C.L.5
Barbato, G.6
Boelens, R.7
Gulaerzi, C.O.8
-
18
-
-
70349957921
-
-
10.1016/j.bpj.2009.06.051
-
P. A. Wiggins, R. T. Dame, M. C. Noom, and G. J. L. Wuite, Biophys. J. 97, 1997 (2009). 10.1016/j.bpj.2009.06.051
-
(2009)
Biophys. J.
, vol.97
, pp. 1997
-
-
Wiggins, P.A.1
Dame, R.T.2
Noom, M.C.3
Wuite, G.J.L.4
-
19
-
-
76749118994
-
-
10.1101/gad.1883510
-
Y. Liu, H. Chen, L. J. Kenny, and J. Yan, Genes Dev. 24, 339 (2010). 10.1101/gad.1883510
-
(2010)
Genes Dev.
, vol.24
, pp. 339
-
-
Liu, Y.1
Chen, H.2
Kenny, L.J.3
Yan, J.4
-
20
-
-
0035083490
-
Structural basis for preferential binding of H-NS to curved DNA
-
DOI 10.1016/S0300-9084(00)01213-X
-
R. T. Dame, C. Wyman, and N. Goosen, Biochimie 83, 231 (2001). 10.1016/S0300-9084(00)01213-X (Pubitemid 32243568)
-
(2001)
Biochimie
, vol.83
, Issue.2
, pp. 231-234
-
-
Dame, R.T.1
Wyman, C.2
Goosen, N.3
-
21
-
-
0037215722
-
-
10.1016/S0006-3495(03)74838-3
-
Y. Zhang and D. M. Crothers, Biophys. J. 84, 136 (2003). 10.1016/S0006-3495(03)74838-3
-
(2003)
Biophys. J.
, vol.84
, pp. 136
-
-
Zhang, Y.1
Crothers, D.M.2
-
22
-
-
0032530555
-
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
-
DOI 10.1073/pnas.95.19.11163
-
W. K. Olson, A. A. Gorin, X.-J. Lu, L. M. Hock, and V. B. Zhurkin, Proc. Natl. Acad. Sci. U.S.A. 95, 11163 (1998). 10.1073/pnas.95.19.11163 (Pubitemid 28450099)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.19
, pp. 11163-11168
-
-
Olson, W.K.1
Gorin, A.A.2
Lu, X.-J.3
Hock, L.M.4
Zhurkin, V.B.5
-
24
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
DOI 10.1038/nature01810
-
Z. Bryant, M. D. Stone, J. Gore, S. B. Smith, N. R. Cozarelli, and C. Bustamante, Nature 424, 388 (2003). 10.1038/nature01810 (Pubitemid 36899378)
-
(2003)
Nature
, vol.424
, Issue.6946
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
Smith, S.B.4
Cozzarelli, N.R.5
Bustamante, C.6
-
25
-
-
0033828272
-
-
10.1101/gr.10.8.1185
-
A. Bolshoy and E. Nevo, Genome Res. 10, 1185 (2000). 10.1101/gr.10.8.1185
-
(2000)
Genome Res.
, vol.10
, pp. 1185
-
-
Bolshoy, A.1
Nevo, E.2
-
26
-
-
0035077729
-
Genome organisation and chromatin structure in Escherichia coli
-
DOI 10.1016/S0300-9084(00)01225-6
-
D. Ussery, T. S. Larsen, K. T. Wilkes, C. Friis, P. Worning, A. Krogh, and S. Brunak, Biochimie 83, 201 (2001). 10.1016/S0300-9084(00)01225-6 (Pubitemid 32243565)
-
(2001)
Biochimie
, vol.83
, Issue.2
, pp. 201-212
-
-
Ussery, D.1
Larsen, T.S.2
Wilkes, K.T.3
Friis, C.4
Worning, P.5
Krogh, A.6
Brunak, S.7
-
28
-
-
0032401769
-
-
10.1093/emboj/17.23.7033
-
M. Falconi, B. Colonna, G. Prosseda, G. Micheli, and C. O. Gualerzi, EMBO J. 17, 7033 (1998) 10.1093/emboj/17.23.7033
-
(1998)
EMBO J.
, vol.17
, pp. 7033
-
-
Falconi, M.1
Colonna, B.2
Prosseda, G.3
Micheli, G.4
Gualerzi, C.O.5
-
29
-
-
78649882848
-
-
10.1016/j.biochi.2010.06.024
-
R. de Vries, Biochimie 92, 1715 (2010). 10.1016/j.biochi.2010.06.024
-
(2010)
Biochimie
, vol.92
, pp. 1715
-
-
De Vries, R.1
|