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Volumn 2, Issue 1, 2010, Pages 49-56

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T)

(34)  Pati, Amrita a   la Butti, Kurt a   Pukall, Rüdiger b   Nolan, Matt a   del Rio, Tijana Glavina a   Tice, Hope a   Cheng, Jan Fang a   Lucas, Susan a   Chen, Feng a   Copeland, Alex a   Ivanova, Natalia a   Mavromatis, Konstantinos a   Mikhailova, Natalia a   Pitluck, Sam a   Bruce, David a,c   Goodwin, Lynne a,c   Land, Miriam a,d   Hauser, Loren a,d   Chang, Yun Juan a,d   Jeffries, Cynthia D a,d   more..


Author keywords

GEBA; Non motile; Non sporeforming; Obligate aerobic; Pleomorphic; Sewage sludge isolate; Sphaerobacteridae; Thermomicrobia; Thermophile

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); CHLOROFLEXI; CHLOROFLEXI (CLASS); SPHAEROBACTER; SPHAEROBACTER THERMOPHILUS; SPHAEROBACTERACEAE; SPHAEROBACTERALES; SPHAEROBACTERIDAE; THERMOMICROBIA (CLASS);

EID: 80053460472     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.601105     Document Type: Article
Times cited : (22)

References (24)
  • 1
    • 0001091599 scopus 로고
    • Sphaerobacter thermophilus gen. nov., sp. nov. A deeply rooting member of the actinomycetes sub-division isolated from thermophilically treated sewage sludge
    • Demharter W, Hensel R, Smida J, Stackebrandt E. Sphaerobacter thermophilus gen. nov., sp. nov. A deeply rooting member of the actinomycetes sub-division isolated from thermophilically treated sewage sludge. Syst Appl Microbiol 1989; 11:261-266.
    • (1989) Syst Appl Microbiol , vol.11 , pp. 261-266
    • Demharter, W.1    Hensel, R.2    Smida, J.3    Stackebrandt, E.4
  • 2
    • 0011117671 scopus 로고
    • The microflora involved in aerobic-thermophilic sludge stabilization
    • Hensel R, Demharter W, Hilpert R. The microflora involved in aerobic-thermophilic sludge stabilization. Syst Appl Microbiol 1989; 11:312-319.
    • (1989) Syst Appl Microbiol , vol.11 , pp. 312-319
    • Hensel, R.1    Demharter, W.2    Hilpert, R.3
  • 4
    • 62649155346 scopus 로고    scopus 로고
    • Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
    • PubMed doi:10.1371/journal.pone.0004207
    • Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon L et al. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. PLoS ONE 2009; 4:e4207 PubMed doi:10.1371/journal.pone.0004207
    • (2009) PLoS ONE , pp. 4
    • Wu, D.1    Raymond, J.2    Wu, M.3    Chatterji, S.4    Ren, Q.5    Graham, J.E.6    Bryant, D.A.7    Robb, F.8    Colman, A.9    Tallon, L.10
  • 5
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • PubMed doi:10.1093/bioinformatics/18.3.452
    • Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformatics 2002; 18:452-464 PubMed doi:10.1093/bioinformatics/18.3.452
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • PubMed
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-552 PubMed
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 7
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web-servers
    • PubMed doi:10.1080/10635150802429642
    • Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 2008; 57:758-771 PubMed doi:10.1080/10635150802429642
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 8
    • 38549144166 scopus 로고    scopus 로고
    • The Genomes OnLine Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
    • PubMed doi:10.1093/nar/gkm884
    • Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. The Genomes OnLine Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2008; 36:D475-D479 PubMed doi:10.1093/nar/gkm884
    • (2008) Nucleic Acids Res , vol.36
    • Liolios, K.1    Mavromatis, K.2    Tavernarakis, N.3    Kyrpides, N.C.4
  • 9
    • 0016172296 scopus 로고
    • Detection of hippurate hydrolase among Bacillus species by thin layer chromato-graphy and other methods
    • PubMed
    • Ottow JCG. Detection of hippurate hydrolase among Bacillus species by thin layer chromato-graphy and other methods. J Appl Bacteriol 1974; 37:15-30 PubMed
    • (1974) J Appl Bacteriol , vol.37 , pp. 15-30
    • Ottow, J.C.G.1
  • 10
    • 43449108562 scopus 로고    scopus 로고
    • Towards a richer description of our complete collection of genomes and metage-nomes: The "Minimum Information about a Ge-nome Sequence" (MIGS) specification
    • PubMed doi:10.1038/nbt1360
    • Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, An-giuoli SV, et al. Towards a richer description of our complete collection of genomes and metage-nomes: the "Minimum Information about a Ge-nome Sequence" (MIGS) specification. Nat Bio-technol 2008; 26:541-547 PubMed doi:10.1038/nbt1360
    • (2008) Nat Bio-technol , vol.26 , pp. 541-547
    • Field, D.1    Garrity, G.2    Gray, T.3    Morrison, N.4    Selengut, J.5    Sterk, P.6    Tatusova, T.7    Thomson, N.8    Allen, M.J.9    An-Giuoli, S.V.10
  • 11
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • PubMed doi:10.1073/pnas.87.12.4576
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579 PubMed doi:10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 12
    • 9744250905 scopus 로고    scopus 로고
    • PubMed doi:10.1099/ijs.0.03028-0
    • Hugenholtz P, Stackebrandt E. Reclassification of Sphaerobacter thermophilus from the subclass Sphaerobacteridae in the phylum Actinobacteria to the class Thermomicrobia (emended description) in the phylum Chloroflexi (emended description) Int J Syst Evol Microbiol 2004; 54:2049-2051 PubMed doi:10.1099/ijs.0.03028-0
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2049-2051
    • Hugenholtz, P.1
  • 13
    • 0001263412 scopus 로고    scopus 로고
    • Thermomicrobia class. nov
    • In: Garrity GM, Boone DR, Castenholz RW, Second Edition, Volume, Springer, New York
    • Garrity GM, Holt JG. Class I. Thermomicrobia class. nov. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 1, Springer, New York, 2001, p. 447.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 447
    • Garrity, G.M.1    Holt, J.G.2    Class, I.3
  • 14
    • 0036560850 scopus 로고    scopus 로고
    • Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Validation List no. 85
    • List Editor, PubMed doi:10.1099/ijs.0.02358-0
    • List Editor. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Validation List no. 85. Int J Syst Evol Microbiol 2002; 52: 685-690; PubMed doi:10.1099/ijs.0.02358-0
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 685-690
  • 15
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a new hierarchic classification system, Actinobacteria classis nov
    • Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479-491.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.A.2    Ward-Rainey, N.L.3
  • 16
  • 19
    • 0015462556 scopus 로고
    • Peptidoglycan types of bacterial cell walls and their taxonomic implications
    • PubMed
    • Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 1972; 36:407-477 PubMed
    • (1972) Bacteriol Rev , vol.36 , pp. 407-477
    • Schleifer, K.H.1    Kandler, O.2
  • 20
    • 84860497940 scopus 로고    scopus 로고
    • List of growth media used at DSMZ
    • List of growth media used at DSMZ: http://www.dsmz.de/microorganisms/media_list.php
  • 22
    • 80053447677 scopus 로고    scopus 로고
    • Anonymous, Oak Ridge National Laboratory and University of Tennessee
    • Anonymous. Prodigal Prokaryotic Dynamic Programming Genefinding Algorithm. Oak Ridge National Laboratory and University of Tennessee 2009 http://compbio.ornl.gov/prodigal/
    • (2009) Prodigal Prokaryotic Dynamic Programming Genefinding Algorithm
  • 24
    • 69949116874 scopus 로고    scopus 로고
    • IMG ER: A system for microbial genome annotation expert review and curation
    • PubMed doi:10.1093/bioinformatics/btp393
    • Markowitz VM, Mavromatis K, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 2009; 25:2271-2278. PubMed doi:10.1093/bioinformatics/btp393
    • (2009) Bioinformatics , vol.25 , pp. 2271-2278
    • Markowitz, V.M.1    Mavromatis, K.2    Ivanova, N.N.3    Chen, I.M.A.4    Chu, K.5    Kyrpides, N.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.