-
1
-
-
2942561052
-
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
-
Grigull J, Mnaimneh S, Pootoolal J, Robinson MD, Hughes TR, (2004) Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Molecular and cellular biology 24: 5534-47.
-
(2004)
Molecular and Cellular Biology
, vol.24
, pp. 5534-5547
-
-
Grigull, J.1
Mnaimneh, S.2
Pootoolal, J.3
Robinson, M.D.4
Hughes, T.R.5
-
2
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
Wang Y, Liu CL, Storey JD, Tibshirani RJ, Herschlag D, et al. (2002) Precision and functional specificity in mRNA decay. Proceedings of the National Academy of Sciences of the United States of America 99: 5860-5.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
-
3
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin P-H, Lin-Chao S, Cohen SN, (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America 99: 9697-702.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.-H.3
Lin-Chao, S.4
Cohen, S.N.5
-
4
-
-
37849034683
-
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana
-
Narsai R, Howell KA, Millar AH, O'Toole N, Small I, et al. (2007) Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. The Plant cell 19: 3418-36.
-
(2007)
The Plant Cell
, vol.19
, pp. 3418-3436
-
-
Narsai, R.1
Howell, K.A.2
Millar, A.H.3
O'Toole, N.4
Small, I.5
-
5
-
-
3242726930
-
Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms
-
García-Martínez J, Aranda A, Pérez-Ortín JE, (2004) Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms. Molecular cell 15: 303-13.
-
(2004)
Molecular Cell
, vol.15
, pp. 303-313
-
-
García-Martínez, J.1
Aranda, A.2
Pérez-Ortín, J.E.3
-
6
-
-
78649507129
-
A complete set of nascent transcription rates for yeast genes
-
doi:10.1371/journal.pone.0015442
-
Pelechano V, Chávez S, Pérez-Ortín JE, (2010) A complete set of nascent transcription rates for yeast genes. PloS ONE 5: e15442 doi:10.1371/journal.pone.0015442.
-
(2010)
PloS ONE
, vol.5
-
-
Pelechano, V.1
Chávez, S.2
Pérez-Ortín, J.E.3
-
7
-
-
78650930357
-
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
-
Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, et al. (2011) Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Molecular systems biology 7: 458.
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 458
-
-
Miller, C.1
Schwalb, B.2
Maier, K.3
Schulz, D.4
Dümcke, S.5
-
8
-
-
49649090030
-
Comprehensive transcriptional analysis of the oxidative response in yeast
-
Molina-Navarro MM, Castells-Roca L, Bellí G, García-Martínez J, Marín-Navarro J, et al. (2008) Comprehensive transcriptional analysis of the oxidative response in yeast. The Journal of biological chemistry 283: 17908-18.
-
(2008)
The Journal of Biological Chemistry
, vol.283
, pp. 17908-17918
-
-
Molina-Navarro, M.M.1
Castells-Roca, L.2
Bellí, G.3
García-Martínez, J.4
Marín-Navarro, J.5
-
9
-
-
53949098609
-
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
-
Shalem O, Dahan O, Levo M, Martinez MR, Furman I, et al. (2008) Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Molecular systems biology 4: 223.
-
(2008)
Molecular Systems Biology
, vol.4
, pp. 223
-
-
Shalem, O.1
Dahan, O.2
Levo, M.3
Martinez, M.R.4
Furman, I.5
-
10
-
-
62549149882
-
mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress
-
Molin C, Jauhiainen A, Warringer J, Nerman O, Sunnerhagen P, (2009) mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. RNA (New York, N.Y.) 15: 600-14.
-
(2009)
RNA (New York, N.Y.)
, vol.15
, pp. 600-614
-
-
Molin, C.1
Jauhiainen, A.2
Warringer, J.3
Nerman, O.4
Sunnerhagen, P.5
-
11
-
-
0036677451
-
Global analysis of stress-regulated mRNA turnover by using cDNA arrays
-
Fan J, Yang X, Wang W, Wood WH, Becker KG, et al. (2002) Global analysis of stress-regulated mRNA turnover by using cDNA arrays. Proceedings of the National Academy of Sciences of the United States of America 99: 10611-6.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 10611-10616
-
-
Fan, J.1
Yang, X.2
Wang, W.3
Wood, W.H.4
Becker, K.G.5
-
12
-
-
29144500327
-
Profiling condition-specific, genome-wide regulation of mRNA stability in yeast
-
Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ, (2005) Profiling condition-specific, genome-wide regulation of mRNA stability in yeast. Proceedings of the National Academy of Sciences of the United States of America 102: 17675-80.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 17675-17680
-
-
Foat, B.C.1
Houshmandi, S.S.2
Olivas, W.M.3
Bussemaker, H.J.4
-
13
-
-
77953281765
-
Global coordination of transcriptional control and mRNA decay during cellular differentiation
-
Amorim MJ, Cotobal C, Duncan C, Mata J, (2010) Global coordination of transcriptional control and mRNA decay during cellular differentiation. Molecular systems biology 6: 380.
-
(2010)
Molecular Systems Biology
, vol.6
, pp. 380
-
-
Amorim, M.J.1
Cotobal, C.2
Duncan, C.3
Mata, J.4
-
14
-
-
77951083459
-
Major role for mRNA stability in shaping the kinetics of gene induction
-
Elkon R, Zlotorynski E, Zeller KI, Agami R, (2010) Major role for mRNA stability in shaping the kinetics of gene induction. BMC genomics 11: 259.
-
(2010)
BMC Genomics
, vol.11
, pp. 259
-
-
Elkon, R.1
Zlotorynski, E.2
Zeller, K.I.3
Agami, R.4
-
16
-
-
66449128185
-
Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae
-
Romero-Santacreu L, Moreno J, Pérez-Ortín JE, Alepuz P, (2009) Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. RNA (New York, N.Y.) 15: 1110-20.
-
(2009)
RNA (New York, N.Y.)
, vol.15
, pp. 1110-1120
-
-
Romero-Santacreu, L.1
Moreno, J.2
Pérez-Ortín, J.E.3
Alepuz, P.4
-
17
-
-
55549121958
-
Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex
-
Jasiak AJ, Hartmann H, Karakasili E, Kalocsay M, Flatley A, et al. (2008) Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex. The Journal of biological chemistry 283: 26423-7.
-
(2008)
The Journal of Biological Chemistry
, vol.283
, pp. 26423-26427
-
-
Jasiak, A.J.1
Hartmann, H.2
Karakasili, E.3
Kalocsay, M.4
Flatley, A.5
-
18
-
-
0037474321
-
Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions
-
Pillai B, Verma J, Abraham A, Francis P, Kumar Y, et al. (2003) Whole genome expression profiles of yeast RNA polymerase II core subunit, Rpb4, in stress and nonstress conditions. The Journal of biological chemistry 278: 3339-46.
-
(2003)
The Journal of Biological Chemistry
, vol.278
, pp. 3339-3346
-
-
Pillai, B.1
Verma, J.2
Abraham, A.3
Francis, P.4
Kumar, Y.5
-
19
-
-
48749090496
-
Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes
-
Goler-Baron V, Selitrennik M, Barkai O, Haimovich G, Lotan R, et al. (2008) Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes. Genes & development 22: 2022-7.
-
(2008)
Genes & Development
, vol.22
, pp. 2022-2027
-
-
Goler-Baron, V.1
Selitrennik, M.2
Barkai, O.3
Haimovich, G.4
Lotan, R.5
-
20
-
-
29144508551
-
The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs
-
Lotan R, Bar-On VG, Harel-Sharvit L, Duek L, Melamed D, et al. (2005) The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs. Genes & development 19: 3004-16.
-
(2005)
Genes & Development
, vol.19
, pp. 3004-3016
-
-
Lotan, R.1
Bar-On, V.G.2
Harel-Sharvit, L.3
Duek, L.4
Melamed, D.5
-
21
-
-
34748850800
-
The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms
-
Lotan R, Goler-Baron V, Duek L, Haimovich G, Choder M, (2007) The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms. The Journal of cell biology 178: 1133-43.
-
(2007)
The Journal of Cell Biology
, vol.178
, pp. 1133-1143
-
-
Lotan, R.1
Goler-Baron, V.2
Duek, L.3
Haimovich, G.4
Choder, M.5
-
22
-
-
78149478886
-
RNA polymerase II subunits link transcription and mRNA decay to translation
-
Harel-Sharvit L, Eldad N, Haimovich G, Barkai O, Duek L, et al. (2010) RNA polymerase II subunits link transcription and mRNA decay to translation. Cell 143: 552-63.
-
(2010)
Cell
, vol.143
, pp. 552-563
-
-
Harel-Sharvit, L.1
Eldad, N.2
Haimovich, G.3
Barkai, O.4
Duek, L.5
-
24
-
-
30044431985
-
RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit
-
Ujvári A, Luse DS, (2006) RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit. Nature structural & molecular biology 13: 49-54.
-
(2006)
Nature Structural & Molecular Biology
, vol.13
, pp. 49-54
-
-
Ujvári, A.1
Luse, D.S.2
-
25
-
-
40349114502
-
The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3′ processing factors
-
Runner VM, Podolny V, Buratowski S, (2008) The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3′ processing factors. Molecular and cellular biology 28: 1883-91.
-
(2008)
Molecular and Cellular Biology
, vol.28
, pp. 1883-1891
-
-
Runner, V.M.1
Podolny, V.2
Buratowski, S.3
-
26
-
-
0037405790
-
Loss of the Rpb4/Rpb7 subcomplex in a mutant form of the Rpb6 subunit shared by RNA polymerases I, II, and III
-
Tan Q, Prysak MH, Woychik NA, (2003) Loss of the Rpb4/Rpb7 subcomplex in a mutant form of the Rpb6 subunit shared by RNA polymerases I, II, and III. Molecular and cellular biology 23: 3329-38.
-
(2003)
Molecular and Cellular Biology
, vol.23
, pp. 3329-3338
-
-
Tan, Q.1
Prysak, M.H.2
Woychik, N.A.3
-
27
-
-
0032963268
-
Rpb7 can interact with RNA polymerase II and support transcription during some stresses independently of Rpb4
-
Sheffer A, Varon M, Choder M, (1999) Rpb7 can interact with RNA polymerase II and support transcription during some stresses independently of Rpb4. Molecular and cellular biology 19: 2672-80.
-
(1999)
Molecular and Cellular Biology
, vol.19
, pp. 2672-2680
-
-
Sheffer, A.1
Varon, M.2
Choder, M.3
-
28
-
-
80053453977
-
mRNA imprinting: Additional level in the regulation of gene expression
-
Choder M, (2011) mRNA imprinting: Additional level in the regulation of gene expression. Cellular logistics 1: 37-40.
-
(2011)
Cellular Logistics
, vol.1
, pp. 37-40
-
-
Choder, M.1
-
29
-
-
33845604554
-
Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways
-
Selitrennik M, Duek L, Lotan R, Choder M, (2006) Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways. Eukaryotic cell 5: 2092-103.
-
(2006)
Eukaryotic Cell
, vol.5
, pp. 2092-2103
-
-
Selitrennik, M.1
Duek, L.2
Lotan, R.3
Choder, M.4
-
30
-
-
0038107498
-
Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress
-
Farago M, Nahari T, Hammel C, Cole CN, Choder M, (2003) Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress. Molecular biology of the cell 14: 2744-55.
-
(2003)
Molecular Biology of the Cell
, vol.14
, pp. 2744-2755
-
-
Farago, M.1
Nahari, T.2
Hammel, C.3
Cole, C.N.4
Choder, M.5
-
31
-
-
65249176527
-
Stress-Dependent Coordination of Transcriptome and Translatome in Yeast
-
doi:10.1371/journal.pbio.1000105
-
Halbeisen RE, Gerber AP, (2009) Stress-Dependent Coordination of Transcriptome and Translatome in Yeast. PLoS Biol 7: e1000105 doi:10.1371/journal.pbio.1000105.
-
(2009)
PLoS Biol
, vol.7
-
-
Halbeisen, R.E.1
Gerber, A.P.2
-
32
-
-
77951589688
-
Cooperation between translating ribosomes and RNA polymerase in transcription elongation
-
Proshkin S, Rahmouni AR, Mironov A, Nudler E, (2010) Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science (New York, N.Y.) 328: 504-8.
-
(2010)
Science (New York, N.Y.)
, vol.328
, pp. 504-508
-
-
Proshkin, S.1
Rahmouni, A.R.2
Mironov, A.3
Nudler, E.4
-
33
-
-
77956285483
-
Cotranscriptional recruitment of She2p by RNA pol II elongation factor Spt4-Spt5/DSIF promotes mRNA localization to the yeast bud
-
Shen Z, St-Denis A, Chartrand P, (2010) Cotranscriptional recruitment of She2p by RNA pol II elongation factor Spt4-Spt5/DSIF promotes mRNA localization to the yeast bud. Genes & development 24: 1914-26.
-
(2010)
Genes & Development
, vol.24
, pp. 1914-1926
-
-
Shen, Z.1
St-Denis, A.2
Chartrand, P.3
-
34
-
-
79960903971
-
Coupled Evolution of Transcription and mRNA Degradation
-
doi:10.1371/journal.pbio.1001106
-
Dori-Bachash M, Shema E, Tirosh I, (2011) Coupled Evolution of Transcription and mRNA Degradation. PLoS Biol 9: e1001106 doi:10.1371/journal.pbio.1001106.
-
(2011)
PLoS Biol
, vol.9
-
-
Dori-Bachash, M.1
Shema, E.2
Tirosh, I.3
-
35
-
-
34547555796
-
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
-
doi:10.1371/journal.pcbi.0030131
-
Shalgi R, Lieber D, Oren M, Pilpel Y, (2007) Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comp Biol 3: e131 doi:10.1371/journal.pcbi.0030131.
-
(2007)
PLoS Comp Biol
, vol.3
-
-
Shalgi, R.1
Lieber, D.2
Oren, M.3
Pilpel, Y.4
-
36
-
-
77950348609
-
Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures
-
Tsang JS, Ebert MS, van Oudenaarden A, (2010) Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures. Molecular cell 38: 140-53.
-
(2010)
Molecular Cell
, vol.38
, pp. 140-153
-
-
Tsang, J.S.1
Ebert, M.S.2
van Oudenaarden, A.3
-
37
-
-
77953850680
-
EGF decreases the abundance of microRNAs that restrain oncogenic transcription factors
-
Avraham R, Sas-Chen A, Manor O, Steinfeld I, Shalgi R, et al. (2010) EGF decreases the abundance of microRNAs that restrain oncogenic transcription factors. Science signaling 3: ra43.
-
(2010)
Science Signaling
, vol.3
-
-
Avraham, R.1
Sas-Chen, A.2
Manor, O.3
Steinfeld, I.4
Shalgi, R.5
|