Partial sequencing of the bottle gourd genome reveals markers useful for phylogenetic analysis and breeding

BMC Genomics

Volumn 12, Issue , 2011, Pages

  Xu, Pei ^a   Wu, Xiaohua ^a   Luo, Jie ^a   Wang, Baogen ^a   Liu, Yonghua ^a   Ehlers, Jeffrey D ^b   Wang, Sha ^a   Lu, Zhongfu ^a   Li, Guojing ^a  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; MICROSATELLITE DNA; PLANT DNA;

ARTICLE; CHINA; CONTROLLED STUDY; CUCUMBER; FRUIT; GENE ISOLATION; GENE SEQUENCE; GENETIC POLYMORPHISM; GENOME ANALYSIS; GEOGRAPHIC ORIGIN; LAGENARIA SICERARIA; LANDRACE; MARKER ASSISTED BREEDING; MICROSATELLITE MARKER; MOLECULAR PHYLOGENY; NONHUMAN; PHYLOGENETIC TREE; PLANT BREEDING; PLANT GENOME; SEQUENCE HOMOLOGY; SIMPLE SEQUENCE REPEAT; VARIETAS; BREEDING; CUCURBITACEAE; DNA SEQUENCE; GENE LIBRARY; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GENOMICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

CUCUMIS SATIVUS; LAGENARIA SICERARIA;

BREEDING; CHINA; CONSERVED SEQUENCE; CUCURBITACEAE; DNA, PLANT; GENE LIBRARY; GENETIC MARKERS; GENETIC VARIATION; GENOME, PLANT; GENOMICS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 80053377043     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-467     Document Type: Article

References (32)

1. Beevy SS, Kuriachan P. Chromosome numbers of south Indian Cucurbitaceae and a note on the cytological evolution in the family. J Cytol Genet 1996, 31:65-71.
2. Morimoto Y, Mvere B. Lagenaria siceraria. Vegetables Plant resources of Tropical Africa 2 2004, 353-358. Backhuys Publishers/CTA, Wageningen/Leiden, Grubben GJH, Denton OA.
3. Lee JM. Cultivation of grafted vegetables I. Current status, grafting methods and benefits. HortScience 1994, 29:235-239.
4. Yetisir H, Sari N. Effect of different rootstock on plant growth, yield and quality of watermelon. Aust J Exp Agric 2003, 43:1269-1274.
5. Decker-Walters DS, Wilkins-Ellert M, Chung SM, Staub JE. Discovery and genetic assessment of wild bottle gourd [Lagenaria siceraria (Mol.) Standley; Cucurbitaceae] from Zimbabwe. Econ Bot 2004, 58:501-508.
6. Whitaker TW. Endemism and pre-Columbian migration of bottle gourd, Lagenaria siceraria (Mol.) Standl. Man across the sea 1971, 78-218. University of Texas Press, Austin, Riley CL, Kelley JC, Pennington CW, Runds RL.
7. Erickson DL, Smith BD, Clarke AC, Sandweiss DH, Tuross N. An Asian origin for a 10,000-year-old domesticated plant in the Americas. Proc Natl Acad Sci USA 2005, 102:18315-20. 10.1073/pnas.0509279102, 1311910, 16352716.
8. Morimoto Y, Maundu P, Fujimaki H, Morishima H. Diversity of landraces of the white-flowered gourd (Lagenaria siceraria) and its wild relatives in Kenya: fruit and seed morphology. Genet Resour Crop Evol 2005, 52:737-747.
9. Heiser CB. The gourd book: A thorough and fascinating account of gourds from throughout the world 1979, University of Oklahoma Press, Norman, Oklahoma.
10. Decker-Walters D, Staub J, Lopez-Sese A, Nakata E. Diversity in landraces and cultivars of bottle gourd (Lagenaria siceraria; Cucurbitaceae) as assessed by random amplified polymorphic DNA. Genet Resour Crop Evol 2001, 48:369-380.
11. Yetisir H, Sakar M, Serce S. Collection and morphological characterization of Lagenaria siceraria germplasm from the Mediterranean region of Turkey. Genet Resour Crop Evol 2008, 55:1257-1266.
12. Achigan-Dako EG, Fuchs J, Ahanchede A, Blattnerv FR. Flow cytometric analysis in Lagenaria siceraria (Cucurbitaceae) indicates correlation of genome size with usage types and growing elevation. Plant Syst Evol 2008, 276:9-19.
13. Morimoto Y, Maundu P, Kawase M, Fujimaki H, Morishima H. RAPD polymorphism of the white-flowered gourd (Lagenaria siceraria (Molina) Standl. landraces and its wild relatives in Kenya. Genet Resour Crop Evol 2006, 53:963-974.
14. Xu P, Wu XH, Wang BG, Liu YH, Qin DH, Ehlers JD, Close TJ, Hu TT, Lu ZF, Li GJ. Development and polymorphism of Vigna unguiculata ssp. unguiculata microsatellite markers used for phylogenetic analysis in asparagus bean (Vigna unguiculata ssp. sesquipedialis (L.) Verdc.). Mol Breeding 2010, 25:675-684.
15. Li CD, Fatokun CA, Ubi B, Singh BB, Scoles GJ. Determining genetic similarities and relationships among cowpea breeding lines and cultivars by microsatellite markers. Crop Sci 2001, 41:189-197.
16. Zane L, Bargelloni L, Patarnello T. Strategies for microsatellite isolation: a review. Mol Ecol 2002, 11:1-16. 10.1046/j.0962-1083.2001.01418.x, 11903900.
17. Maguire T, Collins G, Sedgley M. A modified CTAB DNA extraction procedure for plants belonging to the family proteaceae. Plant Mol Biol Rep 1994, 12:106-109.
18. Huang SW, Li RQ, Zhang ZH, Li L, Gu XF, Fan W, Lucas WJ. The genome of the cucumber, Cucumis sativus L. Nat Genet 2009, 41:1275-1281. 10.1038/ng.475, 19881527.
19. Kolpakov R, Bana G, Kucherov G. mreps: efficient and flexible detection of tandem repeats in DNA. Nucl Acids Res 2003, 31:3672-3678. 10.1093/nar/gkg617, 169196, 12824391.
20. Martins WS, Lucas DCS, Neves KFS, Bertioli DJ. WebSat-A web software for microsatellite marker development. Bioinformation 2009, 3:282-283. 2646864, 19255650.
21. Anderson JA, Churchill GA, Autrique JE, Tanksley SD, Sorrells ME. Optimizing parental selection for genetic linkage maps. Genome 1993, 36:181-186. 10.1139/g93-024, 18469981.
22. Rohlf FJ. NTSYSpc, numerical taxonomy and multi-variate analysis system, version 2.1 user guide. Exeter Software, Setauket.
23. Perrotta G, Ninu L, Flamma F, Weller JL, Kendrick RE, Nebu-loso E, Giuliano G. Tomato contains homologues of Arabidopsis Cryptochrome 1 and 2. Plant Mol Biol 2000, 42:765-773. 10.1023/A:1006371130043, 10809448.
24. Xu P, Xiang Y, Zhu HL, Xu HB, Zhang ZZ, Zhang CQ, Zhang LX, Ma ZQ. Wheat cryptochromes: subcellular localization and involvement in photomorphogenesis and osmotic stress responses. Plant Physiol 2009, 149:760-774. 2633824, 19052154.
25. Zhang B, Tolstikov V, Turnbull C, Hicks LM, Fiehn O. Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits. Proc Natl Acad Sci USA 2010, 107:13532-13537. 10.1073/pnas.0910558107, 2922161, 20566864.
26. Miró M. Cucurbitacins and their pharmacological effects. Phytother Res 2006, 9:159-168.
27. Sharma A, Sharma JP, Jindal R, Kaushik RM. Bottle gourd poisoning. JK Sci 2006, 8:120-121.
28. Bisognin DA. Origin and evolution of cultivated cucurbits. Cienc Rural 2002, 32:715-723.
29. Jarret RL, Merrick LC, Holms T, Evans J, Aradhya MK. Simple sequence repeats in watermelon (Citrullus lanatus (Thunb.) Matsum. & Nakai). Genome 1997, 40:433-441. 10.1139/g97-058, 9276932.
30. Ren Y, Zhang Z, Liu J, Staub JE, Han Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE 2009, 4:e5795. 10.1371/journal.pone.0005795, 2685989, 19495411.
31. Timko MP, Rushton PJ, Laudeman TW, Bokowiec MT, Chipumuro E, Foo Cheung F, Town CD, Chen XF. Sequencing and analysis of the gene-rich space of cowpea. BMC Genomics 2008, 9:103. 10.1186/1471-2164-9-103, 2279124, 18304330.
32. González VM, Benjak A, Hénaff EM, Mir G, Casacuberta JM, Garcia-Mas J, Puigdomènech P. Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy. BMC Plant Biol 2010, 10:246. 10.1186/1471-2229-10-246, 3095328, 21073723.