An integrated genetic and cytogenetic map of the cucumber genome

PLoS ONE

Volumn 4, Issue 6, 2009, Pages

  Ren, Yi ^a   Zhang, Zhonghua ^a   Liu, Jinhua ^b   Staub, Jack E ^c   Han, Yonghua ^b   Cheng, Zhouchao ^a   Li, Xuefeng ^a   Lu, Jingyuan ^b   Miao, Han ^a   Kang, Houxiang ^a   Xie, Bingyan ^a   Gu, Xingfang ^a   Wang, Xiaowu ^a   Du, Yongchen ^a   Jin, Weiwei ^b   Huang, Sanwen ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; CUCUMBER; CYTOGENETICS; DNA POLYMORPHISM; FLUORESCENCE IN SITU HYBRIDIZATION; GENE AMPLIFICATION; GENE CLUSTER; GENE MAPPING; GENETIC LINKAGE; GENETIC TRAIT; GENOME ANALYSIS; MELON; NONHUMAN; PLANT BREEDING; PLANT GENOME; PUMPKIN; SIMPLE SEQUENCE REPEAT; WATERMELON; CHROMOSOME ANALYSIS; CHROMOSOME MAP; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; METHODOLOGY; MOLECULAR CLONING; PLANT GENE; SPECIES DIFFERENCE; SQUASH;

CITRULLUS LANATUS VAR. LANATUS; CUCUMIS; CUCUMIS SATIVUS; CUCURBITACEAE;

PLANT DNA;

CHROMOSOME MAPPING; CITRULLUS; CLONING, MOLECULAR; CUCUMIS SATIVUS; CUCURBITA; CUCURBITACEAE; CYTOGENETIC ANALYSIS; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; GENOME, PLANT; IN SITU HYBRIDIZATION, FLUORESCENCE; LINKAGE (GENETICS); POLYMORPHISM, GENETIC; SPECIES SPECIFICITY;

EID: 67149146195     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0005795     Document Type: Article

References (39)

1. Nayar NM, More TA (1998) Cucurbits. Enfield, NH03748, USA: Science Publishers, Inc.
2. Arumuganathan K, Earle E (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208.
3. Staub JE, Robbins MD, Wehner TC (2008) Cucumber In: Prohens J, Nuez F, eds (2008) Vegetables I: Asteraceae, Brassicaceae, Chenopodiaceae, and Cucurbitaceae. New York: Springer. pp 241-282.
4. Bradeen JM, Staub JE, Wye C, Antonise R, Peleman J (2001) Towards an expanded and integrated linkage map of cucumber (Cucumis sativus L.). Genome 44: 111-119.
5. Danin-Poleg Y, Reis N, Baudracco-Arnas S, Pitrat M, Staub JE, et al. (2000) Simple sequence repeats in Cucumis mapping and map merging. Genome 43: 963-974.
6. Kennard WK, Poetter K, Dijkhuizen A, Meglic V, Staub JE, et al. (1994) Linkages among RFLP, RAPD, isozyme, disease-resistance, and morphological markers in narrow and wide crosses of cucumber. Theor Appl Genet 89: 42-48.
7. Staub JE, Serquen FC (2000) Towards an integrated linkage map of cucumber:map merging. Acta Hort 510: 357-366.
8. Yuan XJ, Li XZ, Pan JS, Wang G, Jiang S, et al. (2008) Genetic linkage map construction and location of QTLs for fruit-related traits in cucumber. Plant Breeding 127: 180-188.
9. Koo DH, Choi HW, Cho J, Hur Y, Bang JW (2005) A high-resolution karyotype of cucumber (Cucumis sativus L. 'Winter Long') revealed by C-banding, pachytene analysis, and RAPD-aided fluorescence in situ hybridization. Genome 48: 534-540.
10. Han YH, Zhang ZH, Liu JH, Lu JY, Huang SW, et al. (2008) Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L.) by fluorescence in situ hybridization. Cytogenet Genome Res 122: 80-88.
11. Chen J-f, Staub JE, Jiang J (1998) A reevaluation of karyotype in cucumber (Cucumis sativus L.). Genet Resour Crop Ev 45: 301-305.
12. Robbins MD, Staub JE (2009) Comparative analysis of marker-assisted and phenotypic selection for yield components in cucumber. Theor Appl Genet, In Press.
13. Fazio G, Chung SM, Staub JE (2003) Comparative analysis of response to phenotypic and marker-assisted selection for multiple lateral branching in cucumber (Cucumis sativus L.). Theor Appl Genet 107: 875-883.
14. Tanksley SD (1993) Mapping Polygenes. Annu Rev Genet 27: 205-233.
15. Toth G, Gaspari Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res 10: 967-981.
16. Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30: 194-200.
17. Tautz D (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17: 6463-6471.
18. Watcharawongpaiboon N, Chunwongse J (2008) Development and Characterization of Microsatellite Markers from an Enriched Genomic Library of Cucumber (Cucumis sativus). Plant Breeding 127: 74-81.
19. Kong Q, Xiang C, Yu Z (2006) Development of EST-SSRs in Cucumis sativus from sequence database. Mol Ecol Notes 6: 1234-1236.
20. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
21. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185.
22. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
23. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual; 3 Lab edition: Cold Spring Harbor Laboratory Press.
24. Van Ooijen J, Voorrips R (2001) JoinMap3.0, software for calculation of genetic linkage maps. Wageningen: Plant Research International.
25. van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, et al. (2006) Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genome wide physical map. Genetics 173: 1075-1087.
26. Keim P, Beavis W, Schupp J, Freestone R (1992) Evaluation of soybean RFLP marker diversity in adapted germ plasm. Theor Appl Genet 85: 205-212.
27. Jiang J, Gill BS, Wang GL, Ronald PC, Ward DC (1995) Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes. Proc Natl Acad Sci U S A 92: 4487-4491.
28. Fazio G, Staub JE, Stevens MR (2003) Genetic mapping and QTL analysis of horticultural traits in cucumber (Cucumis sativus L.) using recombinant inbred lines. Theor Appl Genet 107: 864-874.
29. Rieseberg LH, Livingstone K (2003) Evolution. Chromosomal speciation in primates. Science 300: 267-268.
30. Lander ES, Waterman MS (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2: 231-239.
31. Zhang Z, Deng Y, Tan J, Hu S, Yu J, et al. (2007) A genome-wide microsatellite polymorphism database for the indica and japonica rice. DNA Res 14: 37-45.
32. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, et al. (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11: 1441-1452.
33. Deakin J, Bohn G, Whitaker T (1971) Interspecific hybridization in cucumis. Econ Bot 25: 195-211.
34. Chung SM, Staub JE, Chen JF (2006) Molecular phylogeny of Cucumis species as revealed by consensus chloroplast SSR marker length and sequence variation. Genome 49: 219-229.
35. Horst EK, Lower RL (1978) Cucumis hardwickii: A Source of Germplasm for the Cucumber Breeder. Cucurbit Genetics Cooperative Report 5.
36. Sharma BD, Hore DK (1996) Indian cucumber germplasm and challenges ahead. Genet Resour Crop Ev 43: 7-12.
37. Walters SA, Wehner TC, Barker KR (1993) Root-knot nematode resistance in cucumber and horned cucumber. HortScience. pp 151-154.
38. Munshi A, Panda B, Mandal B, Bisht I, Rao E, et al. (2008) Genetics of resistance to Cucumber mosaic virus in Cucumis sativus var. hardwickii R. Alef. Euphytica 164: 501-507.
39. Fan Z, Robbins M, Staub J (2006) Population development by phenotypic selection with subsequent marker-assisted selection for line extraction in cucumber (Cucumis sativus L.). Theor Appl Genet 112: 843-855.