Genetic and morphological differences between Sebastes vulpes and S. zonatus (Teleostei: Scorpaeniformes: Scorpaenidae)

Fishery Bulletin

Volumn 109, Issue 4, 2011, Pages 429-439

  Muto, Nozomu ^a   Kai, Yoshiaki ^b   Nakabo, Tetsuji ^c  

^a KYOTO UNIVERSITY   (Japan)

^b KYOTO UNIVERSITY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

SCORPAENIDAE; SCORPAENIFORMES; SEBASTES VULPES; TELEOSTEI;

EID: 80053364040     PISSN: 00900656     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (64)

1. Alesandrini, S., and G. Bernardi. 1999. Ancient species flocks and recent speciation events: What can rockfishes teach us about cichlids (and vice versa)? Mol. Evol. 49:814-818.
2. Amaoka, K. 1984. Genus Sebastes. In The fishes of the Japanese archipelago, English ed. (H. Masuda, K. Amaoka, C. Araga, T. Uyeno, and T. Yoshino, eds.), p. 310-313. Tokai Univ. Press, Tokyo.
3. Avise, J. C. 2000. Phylogeography: The history and formation of species, 464 p. Harvard Univ. Press, Cambridge, MA.
4. nd ed., 684 p. Sinauer Associate, Sunderland, MA.
5. Baker, J. M., E. López-Medrano, A. G. Navarro-Sigüenza, O. R. Rojas-Soto, and K. E. Omland. 2003. Recent speciation in the orchard oriole group: divergence of Icterus spurius spurius and Icterus spurius fuertesi. Auk 120:848-859.
6. Bensch, S., and M. Åkesson. 2005. Ten years of AFLP in ecology and evolution: Why so few animals? Mol. Ecol. 14:2899-2914.
7. Buonaccorsi, V. P., C. A. Kimbrell, E. A. Lynn, and R. D. Vetter. 2005. Limited realized dispersal and introgressive hybridization inf luence genetic structure and conservation strategies for brown rockfish Sebastes auriculatus. Conserv. Genet. 6:697-713.
8. Burford, M. O. 2009. Demographic history, geographical distribution and reproductive isolation of distinct lineages of blue rockfish (Sebastes mystinus), a marine fish with a high dispersal potential. J. Evol. Biol. 22:1471-1486.
9. Burford, M. O., and G. Bernardi. 2008. Incipient speciation within a subgenus of rockfish (Sebastosomus) provides evidence of recent radiations within an ancient species flock. Mar. Biol. 154:01-717.
10. Carvalho, G. R., and L. Hauser. 1994. Molecular genetics and stock concept in fisheries. Rev. Fish Biol. Fish. 4:326-350.
11. Chen, L. C. 1971. Systematics, variation, distribution, and biology of rockfishes of the subgenus Sebastomus (Pisces, Scorpaenidae, Sebastes). Bull. Scripps Inst. Oceanogr. 18:1-107.
12. Chen, L. C., and V. V. Barsukov. 1976. A study of the western North Pacific Sebastes vulpes species complex (Scorpaenidae), with description of a new species. Japan. J. Ichthyol. 23:1-8.
13. Congiu, L., I. Dupanloup, T. Patarnello, F. Fontana, R. Rossi, G. Arlati, and L. Zane. 2001. Identification of interspecific hybrids by amplified fragment length polymorphism: The case of sturgeon. Mol. Ecol. 10:2355-2359.
14. Donnelly, M. J., J. Pinto, R. Girod, N. J. Besansky, and T. Lehmann. 2004. Revisiting the role of introgression vs shared ancestral polymorphisms as key processes shaping genetic diversity in the recently separated sibling species of the Anopheles gambiae complex. Heredity 92:61-68.
15. Excoffier, L., and H. E. L. Lischer. 2010. Arlequin suite, vers. 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10:564-567.
16. Funk, D. J., and K. E. Omland. 2003. Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Syst. 34:397-423.
17. Grant, W. S., and B. W. Bowen. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J. Hered. 89:415-426.
18. Hall, T. A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/ NT. Nucl. Acids Symp. Ser. 41:95-98.
19. Hawkins, S. L., J. Heifetz, C. M. Kondzela, J. E. Pohl, R. L. Wilmot, O. N. Katugin, and V. N. Tuponogov. 2005. Genetic variation of rougheye rockfish (Sebastes aleutianus) and shortraker rockfish (S. borealis) inferred from allozymes. Fish. Bull. 103:524-535.
20. Higuchi, M., and K. Kato. 2002. Sequence variability in the mitochondrial DNA control region of f ive Sebastes species. Fish. Sci. 68:643-650.
21. Huff, D. R., R. Peakall, and P. E. Smouse. 1993. RAPD variation within and among natural populations of outcrossing buffalograss [Buchloë dactylides (Nutt.) Engelem.]. Theor. Appl. Genet. 86:927-934.
22. Hyde, J. R., C. A. Kimbrell, J. E. Budrick, E. A. Lynn, and R. D. Vetter. 2008. Cryptic speciation in the vermilion rockf ish (Sebastes miniatus) and the role of bathymetry in the speciation process. Mol. Ecol. 17:1122-1136.
23. Hyde, J. R., and R. D. Vetter. 2007. The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier). Mol. Phylogenet. Evol. 44:790-811.
24. Ingram, T. 2011. Speciation along a depth gradient in a marine adaptive radiation. Proc. R. Soc. Lond. B 278:613-618.
25. rd ed. (O. Okamura, K. Amaoka, eds.), p. 189-209. Yama to Keikoku Sha, Tokyo. [In Japanese.]
26. Johns, G. C., and J. C. Avise. 1998. Tests for ancient species flocks based on molecular phylogenetic appraisals of Sebastes rockfishes and other marine fishes. Evolution 52:1135-1146.
27. Jordan, D. S., and C. W. Metz. 1913. A catalog of the fishes known from the waters of Korea. Mem. Carnegie Mus. 6:1-65.
28. Kai, Y., and T. Nakabo. 2002. Morphological differences among three color morphotypes of Sebastes inermis (Scorpaenidae). Ichthyol. Res. 49:260-266.
29. Kai, Y., K. Nakayama, and T. Nakabo. 2002a. Genetic differences among three colour morphotypes of the black rockfish, Sebastes inermis, inferred from mtDNA and AFLP analyses. Mol. Ecol. 11:2591-2598.
30. Kai, Y., N. Yagishita, H. Ikeda, and T. Nakabo. 2002b. Genetic differences between two color morphotypes of redfish, Sebastes scythropus (Osteichthyes: Scorpaenidae). Species Div. 7:371-380.
31. Kai, Y., N. Yagishita, H. Ikeda, and T. Nakabo. 2003. Molecular phylogenetic perspective on speciation in the genus Sebastes (Scorpaenidae) from the Northwest Pacific and the position of Sebastes within the subfamily Sebastinae. Ichthyol. Res. 50:239-244.
32. Kakehi, Y., K. Nakayama, K. Watanabe, M. Nishida. 2005. Inheritance of amplified fragment length polymorphism markers and their utility in population genetic analysis of Plecoglossus altivelis. J. Fish Biol. 66:1529-1544.
33. Kanayama, T., and D. Kitagawa. 1983. Fishes of Iwate II, Soi-Menukerui, 47 p. Iwate Fisheries Experimental Station, Iwate, Japan. [In Japanese.]
34. Kitagawa, D., H. Imamura, T. Goto, Y. Ishito, K. Fujiwara, and Y. Ueda. 2008. Field guide of the fishes from the Tohoku district, north-eastern waters of Japan, 140 p. Tokai Univ. Press, Tokyo. [In Japanese.]
35. Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, and D. G. Higgins. 2007. Clustal W and Clustal X, vers. 2.0. Bioinformatics 23:2947-2948.
36. Love, M. S., M. Yoklavich, and L. Thorsteinson. 2002. The rockf ishes of the northeast Pacif ic, 405 p. Univ. California Press, Los Angeles, CA.
37. Matsubara, K. 1943. Studies on the scorpaenoid fishes of Japan. Anatomy, phylogeny and taxonomy II. Trans. Sigenkagaku Kenkyusho 2:171-486.
38. McMillan, W. O., and S. R. Palumbi. 1997. Rapid rate of control-region evolution in Pacific butterflyfishes (Chaetodontidae). J. Mol. Evol. 45:473-484.
39. Mendelson, T. C., and K. L. Shaw. 2005. Rapid speciation in an arthropod. Nature 433:375-376.
40. Meyer, A., T. D. Kocher, P. Basasibwaki, and A. C. Wilson. 1990. Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial-DNA sequences. Nature 347:550-553.
41. Nagasawa, T. 2000. Early life history of kitsune-mebaru, Sebastes vulpes (Scorpaenidae), in the Sea of Japan. Ichthyol. Res. 47:311-320.
42. Nakabo, T. 2002a. Introduction to ichthyology. In Fishes of Japan with pictorial keys to the species, English ed. (T. Nakabo, ed.), p. xxi-xlii. Tokai Univ. Press, Tokyo.
43. Nakabo, T. 2002b. Scorpaenidae. In Fishes of Japan with pictorial keys to the species, English ed. (T. Nakabo, ed.), p. 565-595, 1524-1528. Tokai Univ. Press, Tokyo.
44. Narum, S. R., V. P. Buonaccorsi, C. A. Kimbrell, and R. D. Vetter. 2004. Genetic divergence between gopher rockf ish (Sebastes carnatus) and black and yellow rockf ish (Sebastes chrysomelas). Copeia 2004:926-931.
45. th ed., 601 p. John Wiley and Sons, Inc., Hoboken, NJ.
46. Nichols, R. 2001. Gene trees and species trees are not the same. Trends Ecol. Evol. 16:358-364.
47. Omland, K. E., J. M. Baker, and J. L. Peters. 2006. Genetic signatures of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax). Mol. Ecol. 15:795-808.
48. Orr, J. W., and J. E. Blackburn. 2004. The dusky rockfishes (Teleostei: Scorpaeniformes) of the North Pacific Ocean: Resurrection of Sebastes variabilis (Pallas, 1814) and a redescription of Sebastes ciliatus (Tilesius, 1813). Fish. Bull. 102:328-348.
49. Orr, J. W., and S. Hawkins. 2008. Species of the rougheye rockfish complex: Resurrection of Sebastes melanostictus (Matsubara, 1934) and a redescription of Sebastes aleutianus (Jordan and Evermann, 1898) (Teleostei: Scorpaeniformes). Fish. Bull. 106:111-134.
50. Peakall, R., and P. E. Smouse. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6:288-295.
51. Peters, J. L., Y. Zhuravlev, V. Fefelov, A. Logie, and K. E. Omland. 2007. Nuclear loci and coalescent methods support ancient hybridization as cause of mitochondrial paraphyly between gadwall and falcated duck (Anas spp.). Evolution 61:1992-2006.
52. R Development Core Team. 2010. R: A language and environment for statistical computing. URL http://www.R-project.org.
53. Rocha-Olivares, A., R. H. Rosenblatt, and R. D. Vetter. 1999. Cryptic species of rockfishes (Sebastes: Scorpaenidae) in the southern hemisphere inferred from mitochondrial lineages. J. Hered. 90:404-411.
54. Roques, S., J. M. Sevigny, and L. Bernatchez. 2001. Evidence for broadscale introgressive hybridization between two redfish (genus Sebastes) in the North-west Atlantic: A rare marine example. Mol. Ecol. 10:149-165.
55. Rüber, L., and R. Zardoya. 2005. Rapid cladogenesis in marine fishes revisited. Evolution 59:1119-1127.
56. Sasaki, M. 2003. Kitsune mebaru Sebastes vulpes Döderlein. In Shin kita no sakana tachi (Y. Ueda, K. Maeda, H. Shimada, and T. Takami, eds.), p. 194-195. Hokkaido Shinbun Sha, Hokkaido, Japan. [In Japanese.]
57. Seehausen, O., E. Koetsier, M. V. Schneider, L. J. Chapman, C. A. Chapman, M. E. Knight, G. F. Turner, J. J. M. van Alphen, and R. Bills. 2003. Nuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species f lock. Proc. R. Soc. Lond. B 270:2637-2638.
58. Sekigawa, T., T. Takahashi, T. Takatsu, S. Nishiuchi, M. Sasaki, and F. Shiokawa. 2003. Age and growth of Sebastes vulpes in the coastal waters of western Hokkaido, Japan. Fish. Sci. 69:575-580.
59. Sobel, J. M., G. F. Chen, L. R. Watt, and D. W. Schemske. 2009. The biology of speciation. Evolution 64:295-315.
60. Stefánsson, M. Ö., T. Sigurdsson, C. Pampoulie, A. K. Daníelsdóttir, B. Thorgilsson, A. Ragnarsdóttir, D. Gíslason, J. Coughlan, T. F. Cross, and L. Bernatchez. 2009. Pleistocene genetic legacy suggests incipient species of Sebastes mentella in the Irminger Sea. Heredity 102:514-524.
61. Steindachner, F., and L. Döderlein. 1884. Beiträge zur kenntniss der fische Japan's. (III.). Denkschr. Akad. Wiss. Wien. 49:171-212, Pls. 1-7. [In German.]
62. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Friters, J. Pot, J. Paleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucl. Acids Res. 23:4407-4414.
63. Young, W. P., C. O. Ostberg, P. Keim, and G. H. Thorgaard. 2001. Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Mol. Ecol. 10:921-930.
64. Zakharov, E. V., N. F. Lobo, C. Nowak, and J. J. Hellmann. 2009. Introgression as a likely cause of mtDNA paraphyly in two allopatric skippers (Lepidoptera: Hesperiidae). Heredity 102:590-599.