Rapid rate of control-region evolution in Pacific butterflyfishes (Chaetodontidae)

Journal of Molecular Evolution

Volumn 45, Issue 5, 1997, Pages 473-484

  McMillan, W Owen ^a   Palumbi, Stephen R ^b  

^a UNIVERSITY OF PUERTO RICO   (Puerto Rico)

^b UNIVERSITY OF HAWAII   (United States)

Author keywords

Cytochrome b; Fish mitochondrial DNA; Gene trees; Rate variation; Transition transversion bias

Indexed keywords

MITOCHONDRIAL DNA;

ARTICLE; EVOLUTION; FISH; GENE CLUSTER; GENE SEQUENCE; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PACIFIC OCEAN; PHYLOGENY; POLYMERASE CHAIN REACTION;

ANIMALS; BASE SEQUENCE; CYTOCHROME B GROUP; DNA PRIMERS; EVOLUTION, MOLECULAR; FISHES; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL; RNA, TRANSFER, PRO; VARIATION (GENETICS);

CHAETODONTIDAE;

EID: 0030862356     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006252     Document Type: Article

References (54)

1. Allen GR (1980) Butterfly and angelfishes of the world, Vol. 2, Wiley-Interscience, New York
2. Anderson GRV, Ehrlich AH, Ehrlich PR, Roughgarden JD, Russel BC, Talbot FH (1981) The community structure of coral reef fishes. Am Nat 117:476-495
3. Bernatchez L, Danzmann RD (1993) Congruence in control-region sequence and restriction site variation in mitochondrial DNA of brook charr (Salvelinus fontinalis, Mitchill). Mol Biol Evol 10: 1002-1014
4. Bernatchez L, Gyuomard R, Bonhomme F (1992) Sequence variation of the mitochondrial control-region among geographically and morphologically remote European brown trout (Salmo trutta, L.) populations. Mol Ecol 1:161-173
5. Bliss CI, Fisher RA (1953) Fitting the negative binomial to biological data. Biometrics 9:176-200
6. Blum, SD (1989) Biogeography of the Chaetodontidae: an analysis of allopatry among closely related species. Envir Biol Fish 25:9-31
7. Brown JR, Beckenbach AT, Smith MJ (1993) Intra-specific DNA sequence variation of the mitochondrial control-region of the white sturgeon (Acipenser transmontanus). Mol Biol Evol 10:326-341
8. Burgess WE (1978) Butterflyfishes of the world. T.F.H. Publications, Neptune City
9. Choat JH, Bellwood DR (1991) Reef fishes: their history and evolution. In: Sale P (ed) The ecology of fishes on coral reefs. Academic Press, San Diego, p 39
10. Edwards SV (1993) Long-distance gene flow in a cooperative breeder detected in the genealogies of mitochondrial DNA sequence. Proc R Soc Lond [Biol] 252:177-185
11. Faith DP (1991) Cladistic permutation tests for monophyly and non-monophyly. Syst Zool 40:366-375
12. Fajen A, Breden F (1992) Mitochondrial DNA sequence variation among natural populations of the Trinidad guppy, Poecilia reticulata. Evolution 46:1457-1465
13. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
14. Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL-V - improved software for multiple sequence alignment. Computer applications Biosci 8:189-191
15. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic trees. Sys Biol 42:182-192
16. Horai S, Hayasaka K (1990) Intraspecific nucleotide sequence differences in the major noncoding region of human mitochondrial DNA. Amer J Human Genetics 46:828-842
17. Hourigan TF, Reese ES (1987) Mid-ocean isolation and the evolution of Hawaiian reef fishes. Trends Ecol Evol 2:197-191
18. Irwin DM, Kocher TD, Wilson AC (1991) Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128-144
19. Kimura M (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
20. Kocher TD, Wilson AC (1991) Sequence evolution of mitochondrial DNA in humans and chimpanzees: Control-region and a protein-coding region. In: Osawa S, Honjo T (eds) Evolution of life. Springer-Verlag, New York, p 391
21. Kumar S (1996) Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates. Genetics 143:537-548
22. Kumar S, Tamura K, Nei M (1993) MEGA: molecular evolutionary genetics analysis, Version 1.01. Pennsylvania State University. University Park, PA
23. Lee W-J, Conroy JA, Howell WH, Kocher TD (1995) Structure and evolution of the teleost mitochondrial control-regions. J Mol Evol 41:54-66
24. Lee W-J, Kocher TD (1995) Complete sequence of a Sea Lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organism. Genetics 139:873-887
25. Madison WP, Madison DR (1992) MacClade: analysis of phylogeny and character evolution. Sinauer Press, Sunderland, MA
26. Martin AP, Naylor GJP, Palumbi SR (1992) Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature 357:153-155
27. McMillan WO, Palumbi SR (1995) Concordant evolutionary patterns among Indo-west Pacific butterflyfishes. Proc R Soc Lond [Biol] 260:229-236
28. McMillan WO, Palumbi SR (1997) Color pattern evolution, mate choice and genetic differentiation in brightly-colored butterflyfishes (Chaetodontidae) Evolution (submitted)
29. Meyer A, Kocher TD, Basasibwaki P, Wilson AC (1990) Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature 347:550-553
30. Moran P, Kornfield I (1993) Retention of ancestral polymorphism in the Mbuna species Flock (Teleostei: Cichlidae) of lake Malawi. Mol Biol Evol 10:1015-1029
31. Neigel JE, Avise JC (1986) Phylogenetic relationships of mitochondrial DNA under various demographic modes of speciation. In: Karlin S, Nevo E (eds) Evolutionary Process and Theory. Academic Press, New York, p 515
32. Palumbi SR, Kessing BD (1991) Population biology of the trans-arctic exchange: mtDNA sequence similarity between Pacific and Atlantic sea urchins. Evolution 45:1790-1815
33. Palumbi SR, Martin A, Romano S, McMillan WO, Stice L, Grabowski G (1991) The simple fool's guide to PCR. Department of Zoology, University of Hawaii, Honolulu
34. Reese E (1975) A comparative field study of the social behavior and related ecology of reef fishes of the family Chaetodontidae. Z Teirpsychol 37:37-61
35. Saccone C, Pesole G, Sbisa E (1991) The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J MoI Evol 33:83-91
36. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
37. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. 2nd edition. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
38. Shedlock AM, Parker JD, Crispin DA, Pietsch TW, Burmer GC (1992) Evolution of the salmonid mitochondrial control-region. Mol Phy Evol 1:179-192
39. Southwood TRE (1978) Ecological methods. Chapman and Hall, London
40. Sturmbauer C, Meyer A (1992) Genetic divergence, speciation and morphological stasis in a lineage of African cichlid fishes, Nature 358:578-581
41. Swofford D (1993) Phylogenetic analysis using parsimony (PAUP). Version 3.1.1. Illinois Natural History Survey, Champaign, IL
42. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control-region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
43. Tzeng C-S, Hui C-F, Shen S-C, Huang PC (1992) The complete nucleotitle sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. Nucleic Acids Res 20:4853-4858
44. Uzzell T, Corbin KW (1971) Fitting discrete probability distributions to evolutionary events. Science 172:1098-1096
45. Vigilant LM, Stoneking M, Harpending H, Hawkes K, Wilson AC (1991) African populations and the evolution of human mitochondrial DNA. Science 236:1503-1507
46. Wakeley J (1993) Substitution rale variation among sites in hypervariable region I of human mitochondrial DNA. J Mol Evol 37:613-623
47. Wakeley J (1996) The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance. Trends Ecol Evol 11:158-163
48. Ward FH, Frazier BL, Dew-Jaer K, Pääho S (1991) Extensive mitochondrial diversity within a single Amer-indian tribe. Proc Natl Acad Sci USA 88:8270-8274
49. Wenink PW, Baker AJ, Tilanus MGJ (1993) Hypervariable control-region sequences reveal global population structuring in a long-distance migrant shorehird, the Dunlin (Calidris alpina). Proc Natl Acad Sci USA 90:94-98
50. West-Eberhard MJ (1983) Sexual selection, social competition and speciation, Quart Rev Biol 58:155-183
51. Wolfe KH, Sharp PM (1993) Mammalian gene evolution-nucleotide-sequence divergence between mouse and rat. J Mol Evol 37:441-456
52. Yang ZH (1996) The among-site variation and its impact on phylogenetic analysis. Trends Ecol Evol 11:367-372
53. Zhu D, Jamieson BG M, Hugall A, Moritz C (1994) Sequence evolution and phylogenctic signal in control-region and cytochrome b sequences of rainbow fishes (Melanotaeniidae). Mol Biol Evol 11: 672-683
54. Zischler H, Geisert H, von Haeseler A, Paabo S (1995) A nuclear "fossil" of the mitochondrial d-loop and the origins of modern humans. Nature 378:489-492