Rhizomarasmius epidryas (Physalacriaceae): Phylogenetic placement of an arctic-alpine fungus with obligate saprobic affinity to Dryas spp.

Mycologia

Volumn 103, Issue 5, 2011, Pages 1124-1132

  Ronikier, Michał ^a   Ronikier, Anna ^a  

^a POLISH ACADEMY OF SCIENCES   (Poland)

Author keywords

Marasmius; Mycetinis; nLSU; Phylogeny; RPB2; Taxonomy

Indexed keywords

FUNGAL DNA;

BAYESIAN ANALYSIS; BIOGEOGRAPHY; BIOLOGICAL CHARACTERISTICS; BODY SIZE; CLADISTICS; FUNGUS; PHYLOGENY; RELATEDNESS; SAPROTROPHY; SPECIALIST; TAXONOMY;

AGARICALES; ARCTIC; ARTICLE; CLASSIFICATION; CYTOLOGY; DNA SEQUENCE; GENETICS; MICROBIOLOGY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; POLYMERASE CHAIN REACTION; ROSACEAE;

AGARICALES; ARCTIC REGIONS; BASE SEQUENCE; DNA, FUNGAL; PHYLOGENY; POLYMERASE CHAIN REACTION; ROSACEAE; SEQUENCE ANALYSIS, DNA;

FUNGI; GLOIOCEPHALA; MARASMIUS; RHIZOMARASMIUS; RHIZOMARASMIUS PYRROCEPHALUS;

EID: 80053334163     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-018     Document Type: Article

References (39)

1. Agerer R. 2004. Rhizomorph structure of Hymenomycetes: a possibility to test DNA-based phylogenetic hypotheses? In: Agerer R, Piepenbring M, Blanz P, eds. Frontiers in Basidiomycote mycology. Eching, Germany: IHW-Verlag. p 249-302.
2. Antonín V. 1987. Setulipes, a new genus of marasmioid fungi (Tricholomatales). Czech Mycol 41(2):85-87.
3. Antonín V, Noordeloos ME. 1993. A monograph of Marasmius, Collybia and related genera in Europe 1. Marasmius, Setulipes and Marasmiellus. Libri Botanici 8.
4. Antonín V, Noordeloos ME. 2010. A monograph of marasmioid and collybioid fungi in Europe. Eching, Germany: IHW Verlag. 480 p.
5. Binder M, Besl H, Bresinsky A. 1997. Agaricales or Boletales? Molecular evidence toward the classification of some controversial taxa. Z Mykol 63:189-196.
6. Binder M, Hibbett DS. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971-981, doi:10.3852/mycologia.98.6.971
7. Binder M, Hibbett DS, Wang Z, Farnham WF. 2006. Evolutionary relationships of Mycaureola dilseae (Agaricales), a basidiomycete pathogen of a subtidal rhodophyte. Am J Bot 93:547-556, doi:10.3732/ajb.93.4.547
8. Celio GJ, Padamsee M, Dentinger BTM, Bauer R, McLaughlin DJ. 2006. Assembling the Fungal Tree of Life: constructing the structural and biochemical database. Mycologia 98:850-859, doi:10.3852/mycologia.98.6.850
9. Eberhardt U. 2002. Molecular kinship analyses of the agaricoid Russulaceae: correspondence with mycorrhizal anatomy and sporocarp features in the genus Russula. Mycol Prog 1:201-223, doi:10.1007/s11557-006-0019-6
10. Garnica S, Weiss M, Walther G, Oberwinkler F. 2007. Reconstructing the evolution of agarics from nuclear gene sequences and basidiospore ultrastructure. Mycol Res 111:1019-1029, doi:10.1016/j.mycres.2007.03.019
11. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
12. Hanna JW, Klopfenstein NB, Kim M-S, McDonald GI, Moore JA. 2007. Phylogeographic patterns of Armillaria ostoyae in the western United States. For Pathol 37:192-216.
13. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking RH, Lumbsch HT, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, Zhang N. 2007. A higherlevel phylogenetic classification of the Fungi. Mycol Res 111:509-547, doi:10.1016/j.mycres.2007.03.004
14. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755, doi:10.1093/bioinformatics/17.8.754
15. Kühner R. 1936. Nouvelles recherches sur le genre Marasmius. Ann Soc Linn Lyon 79(1935):99-120.
16. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X. Version 2.0. Bioinformatics 23: 2947-2948, doi:10.1093/bioinformatics/btm404
17. Larsson E, Larsson K-H. 2003. Phylogenetic relationships of russuloid basidiomycetes with emphasis on aphyllophoralean taxa. Mycologia 95:1037-1065, doi:10.2307/3761912
18. Matheny PB. 2005. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol Phylogenet Evol 35:1-20, doi:10.1016/j.ympev.2004.11.014
19. Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98:982-995, doi:10.3852/mycologia.98.6.982
20. Mleczko P, Ronikier M. 2007. Features of ectomycorrhizae confirm molecular phylogenetics of Suillus (Boletales) rather than carpophore-based systematics: insights from studies on Suillus variegatus, S. plorans and related species. Nova Hedwig 84:1-20, doi:10.1127/0029-5035/2007/0084-0001
21. Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R. 2000. Phylogenetic relationships of Agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst Biol 49:278-305, doi:10.1093/sysbio/49.2.278
22. Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Aime MC, Hofstetter V, Verduin SJW, Larsson E, Baroni TJ, Thorn RG, Jacobsson S, Clémençon H, Miller OK Jr. 2002. One hundred seventeen clades of euagarics. Mol Phylogenet Evol 23:357-400, doi:10.1016/S1055-7903(02)00027-1
23. Noordeloos ME. 2008. Mycetinis Earle. In: Knudsen H, Vesterholt J, eds. Funga Nordica. Agaricoid, boletoid and cyphelloid genera. Copenhagen: Nordsvamp. 965 p.
24. Noordeloos ME, Antonín V. 2008. Contribution to a monograph of marasmioid and collybioid fungi in Europe. Czech Mycol 60(1):21-27.
25. Owings P, Desjardin DE. 1997. A molecular phylogeny of Marasmius and selected segregate genera. Inoculum 48:29-30.
26. Petersen RH. 2000. Rhizomarasmius, gen. nov. (Xerulaceae, Agaricales). Mycotaxon 75:333-342.
27. Petersen RH, Hughes KW. 2010. The Xerula/Oudemansiella complex (Agaricales). Nova Hedwig Beiheft 137:1-625.
28. Posada D. 2008. jModeltest: phylogenetic model averaging. Mol Biol Evol 25:1253-1256, doi:10.1093/molbev/msn083
29. Redhead SA, Miller OK Jr, Watling R, Ohenoja E. 1982. Marasmius epidryas. Fungi Can No. 213.
30. Redhead SA, Vilgalys R, Moncalvo J-M, Johnson J, Hopple JS. 2001. Coprinus Pers. and the disposition of Coprinus species sensu lato. Taxon 50:203-241, doi:10.2307/1224525
31. Ronikier A. 2009. Validation of Marasmius epidryas (Agaricomycetes), an emblematic arctic-alpine fungus. Mycol Prog 8:381-384, doi:10.1007/s11557-009-0605-5
32. Ronikier A, Ronikier M. 2010a. Biogeographical patterns of arctic-alpine fungi: distribution analysis of Marasmius epidryas, a typical circumpolar species of cold environments. N Am Fungi 5:23-50, doi:10.2509/naf2010.005.0053
33. Ronikier A, Ronikier M. 2010b. Marasmius epidryas at the southern edge of its potential distribution range: discovery of populations in the western Balkan mountains. Sydowia 62:295-304.
34. Ronquist F, Huelsenbeck JP, van der Mark P. 2005. MrBayes 3.1. http://mrbayes.csit.fsu.edu/mb3.1_manual.pdf
35. Saar I, Põldmaa K, Kõljag U. 2009. The phylogeny and taxonomy of genera Cystoderma and Cystodermella (Agaricales) based on nuclear ITS and LSU sequences. Mycol Prog 8:59-73, doi:10.1007/s11557-008-0578-9
36. Savolainen V, Cuénoud P, Spichiger R, Martinez MDP, Crévecoeur M, Manen JF. 1995. The use of herbarium specimens in DNA phylogenetics: evaluation and improvement. Plant Syst Evol 197:87-98, doi:10.1007/BF00984634
37. Singer R. 1986. The Agaricales in modern taxonomy. Koenigstein, Germany: Sven Koeltz Scientific Books. 981 p, 88 pl.
38. Walther G, Garnica S, Weiss M. 2005. The systematic relevance of conidiogenesis modes in the gilled Agaricales. Mycol Res 109:525-544, doi:10.1017/S0953756205002868
39. Wilson AW, Desjardin DE. 2005. Phylogenetic relationships in the gymnopoid and marasmioid fungi (Basidiomycetes, euagarics clade). Mycologia 97:667-679, doi:10.3852/mycologia.97.3.667