Phylogenetic relationships in the gymnopoid and marasmioid fungi (Basidiomycetes, euagarics clade)

Mycologia

Volumn 97, Issue 3, 2005, Pages 667-679

  Wilson, Andrew W ^a,b   Desjardin, Dennis E ^a  

^a SAN FRANCISCO STATE UNIVERSITY   (United States)

^b CLARK UNIVERSITY   (United States)

Author keywords

Fungal systematics; Gymnopus; Lentinuloid; Marasmiellus; Marasmius; Mycetinis; nrDNA

Indexed keywords

BAYESIAN ANALYSIS; CLADISTICS; FUNGUS; PHYLOGENETICS; TAXONOMY;

BASIDIOMYCOTA; CRINIPELLIS; CYLINDROBASIDIUM; FLAMMULINA; FUNGI; GLOIOCEPHALA; GYMNOPUS; LENTINULA; LENTINUS; MARASMIELLUS; MARASMIUS; MICROMPHALE; PHYSALACRIA; RHODOCOLLYBIA; SETULIPES; STROBILURUS (FUNGUS); TETRAPYRGOS; XERULA;

EID: 25444442343     PISSN: 00275514     EISSN: None     Source Type: Journal    
DOI: 10.1080/15572536.2006.11832797     Document Type: Article

References (61)

1. Antonín V. 1987. Setulipes, a new genus of marasmioid fungi (Tricholomatales). Ceska Mycol 41:85-87.
2. _, Halling RE, Noordeloos ME. 1997. Generic concepts within the groups of Marasmius and Collybia sensu lato. Mycotaxon 63:359-368.
3. _, Noordeloos ME. 1993. A monograph of Marasmius, Collybia and related genera in Europe. Part 1: Marasmius, Setulipes, and Marasmiellus. Lib Bot 8:1-229.
4. _. 1997. A monograph of Marasmius, Collybia and related genera in Europe. Part 2: Collybia, Gymnopus, Rhodocollybia, Crinipellis, Chaetocalathus, and additions to Marasmiellus. Lib Bot 17:1-256.
5. Berthier J. 1985. Les Physalacriaceae du globe. Biblio Mycol 98:1-128.
6. Bodensteiner P, Binder M, Moncalvo J-M, Agerer R, Hibbett DS. 2004. Phylogenetic relationships of cyphelloid homobasidiomycetes. Mol Phylogen Evol 33:501-515.
7. Corner EJH. 1966. A monograph of cantharelloid fungi. England: Oxford University Press. 255 p.
8. _. 1970. Supplement to "A monograph of Clavaria and allied genera." Beih Nova Hedwigia 33:1-299.
9. _. 1991. Trogia (Basidiomycetes). Singapore Botanic Gardens, Singapore. 100 p.
10. _. 1996. The agaric genera Marasmius, Chaetocalathus, Crinipellis, Heimiomyces, Resupinatus, Xerula, and Xerulina in Malesia. Beih Nova Hedwigia 111:1-175.
11. Desjardin DE, Gordon SA, Petersen RH. 1993. Observations on two rhizomorph-forming species of Marasmiellus. Mycol Res 97:111-122.
12. _, Halling RE, Hemmes DE. 1999. Agaricales of the Hawaiian Islands. 5: the genera Rhodocollybia and Gymnopus. Mycologia 91:166-177.
13. Donk MA. 1962. The generic names proposed for Agaricaceae. Beih Nova Hedwigia 5:1-317.
14. Earle FS. 1909. The genera of North American gill fungi. Bull New York Bot Gard 5:373-451.
15. Fries EM. 1838. Epicrisis systematis mycologici. Upsala, Sweden. 610 p.
16. Gilliam MS. 1975. Marasmius section Chordales in the northeastern United States and adjacent Canada. Contr Univ Michigan Herb 11:25-40.
17. _. 1976. The genus Marasmius in the northeastern United States and adjacent Canada. Mycotaxon 4:1-144.
18. Gmelin R, Luxa H-H, Roth K, Höfle G. 1976. Dipeptide precursor of garlic odour in Marasmius species. Phytochemistry 15:1717-1721.
19. Halling RE. 1983. The genus Collybia (Agaricales) in the northeastern United States and adjacent Canada. Mycol Mem 8:1-148.
20. Horak E. 1983. Neufunde und Bemerkungen zu einem emendierten Gattungskonzept von Pterospora Métrod (Agaricales). Sydowia 36:125-138.
21. _. 1986. Tetrapyrgos Horak (nom. et gen. nov.) replacing Pterospora Métrod (1949; nom. preocc.). Sydowia 39:101-103.
22. _, Desjardin DE. 1994. Reduced marasmioid and mycenoid agarics from Australasia. Australian J Syst Bot 7:153-170.
23. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
24. Hughes KW, Petersen RH, Johnson JE, Moncalvo J-M, Vilgalys R, Redhead SA, Thomas T, McGhee LL. 2001. Infragenic phylogeny of Collybia s. str., based on sequences of ribosomal ITS and LSU regions. Mycol Res 105:164-172.
25. Jülich W. 1981. Higher taxa of Basidiomycetes. Biblio Mycol 85:1-485.
26. Kämmerer A, Besl H, Bresinsky A. 1985. Omphalotaceae fam. nov. und Paxillaceae, ein chemotaxonomischer Vergleich zwier Pilzfamilien der Boletales. Plant Syst Evol 150(1-2):101-117.
27. Kühner R. 1933. Etudes sur le genre Marasmius. Botaniste 25:57-116.
28. _. 1980. Les hyménomycetes agaricoides (Agaricales, Trichomatales, Pluteales, Russulales). Bull Soc Linn Lyon 49 (num spec):1-1027.
29. Lennox JW. 1979. Collybioid genera in the Pacific Northwest. Mycotaxon 9:117-231.
30. Maddison DR, Maddison WP. 2001. MacClade 4, version 4.03. Sunderland, Massachusetts, USA: Sinaur.
31. Mata JL, Hughes KW, Petersen RH. 2004. Phylogenetic placement of Marasmiellus juniperinus. Mycoscience 45:214-221.
32. Moncalvo J-M, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R. 2000. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst Biol 49:278-305.
33. _, Vilgalys R, Redhead SA, Johnson JE, James TY, Aime MC, Hofstetter V, Verduin SJW, Larsson E, Baroni TJ, Thorn RG, Jacobsson S, Clémenç on H, Miller Jr OK. 2002. One hundred and seventeen clades of euagarics. Mol Phylogen Evol 23:357-400.
34. Mort ME, Soltis PS, Soltis DE, Mabry ML. 2000. Comparison of three methods for estimating internal support on phylogenetic trees. Syst Biol 49:160-171.
35. Owings P. 1997. Evolutionary relationships within the genus Marasmius inferred by morphological and nrDNA sequence comparisons [Master's thesis]. San Francisco, California: San Francisco State University. 92 p.
36. _, Desjardin DE. 1997. A molecular phylogeny of Marasmius and selected segregate genera. Inoculum 48(3):29.
37. Petersen RH. 2000. Rhizomarasmius, gen. nov. (Xerulaceae, Agaricales). Mycotaxon 75:333-342.
38. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14(9):817-818.
39. Redhead SA. 1980. The genus Strobilurus (Agaricales) in Canada with notes on extralimital species. Can J Bot 58:68-83.
40. _. 1987. The Xerulaceae (Basidiomycetes), a family with sarcodimitic tissues. Can J Bot 65:1551-1562.
41. _, Ginns J. 1980. Cyptotrama asprata (Agaricales) from North America and notes on the five other species of Cyptotrama sect. Xerulina. Can J Bot 58:731-740.
42. _, Shoemaker RA. 1987. The Xerula (Collybia, Oudemansiella) radicata complex in Canada. Mycotaxon 30:357-405.
43. _, Petersen RH. 1999. New species, varieties and combinations in the genus Flammulina. Mycotaxon 71:285-294.
44. Rogers SO, Bendich AJ. 1994. Extraction of total cellular DNA from plants, algae and fungi. D1:1-8. In: Gelvin SB, Schilperoort RA, eds. Plant Molecular Biology Manual. 3rd ed. Dordrcht, The Netherlands: Kluwer Academic Press.
45. Salamin N, Mark CW, Hodkinson TR, Savolainen V. 2003. Assessing internal support with large phylogenetic DNA matrices. Mol Phylogen Evol 27:528-539.
46. Schröter J. 1889. Pilze: Agaricacei. In Cohn: Kryptogamenflora von Schlesien 3:513-684.
47. Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16(8):1114-1116.
48. Singer R. 1942. A monographic study of the genera Crinipellis and Chaetocalathus. Lilloa 8:441-534.
49. _. 1948. Diagnoses fungorum novorum Agaricalium. Sydowia 2:26-42.
50. _. 1949 (1951). The Agaricales (mushrooms) in modern taxonomy. Lilloa 22:1-832.
51. _. 1958. New genera of fungi. VIII. Notes concerning the sections of the genus Marasmius. Mycologia 50:103-110.
52. _. 1960. Monographs of South American Basidiomycetes, especially those of the east slope of the Andes and Brazil. 3. Reduced marasmioid genera in South America. Sydowia 14:258-280.
53. _. 1973. The genera Marasmiellus, Crepidotus and Simocybe in the Neotropics. Beih Nova Hedwigia 44:1-339.
54. _. 1975a. The neotropical species of Campanella and Aphyllotus. Nova Hedwigia 26:847-895.
55. _. 1975b. The Agaricales in modern taxonomy. 3rd ed. J. Cramer, Vaduz. 912 p.
56. _. 1976. Marasmieae (Basidiomycetes - Tricholomataceae). Fl Neotropica 17:1-348.
57. _. 1986. The Agaricales in modern taxonomy. 4th ed. Koeltz Scientific Books, Germany. 981 p.
58. Swofford DL. 2002. PAUP*. Phylogenetic Analysis Using Parisimony (*and other methods), version 4. Sunderland, Massachusetts: Sinauer.
59. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acid Res 24:4876-4882.
60. Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bact 172(8):4238-4246.
61. Wilson AW, Desjardin DE, Horak E. 2004. Agaricales of Indonesia. 5. The genus Gymnopus from Java and Bali. Sydowia 56:137-210.