Evolutionary relationships of Mycaureola dilseae (Agaricales), a basidiomycete pathogen of a subtidal rhodophyte

American Journal of Botany

Volumn 93, Issue 4, 2006, Pages 547-556

  Binder, Manfred ^a   Hibbett, David S ^a   Wang, Zheng ^a   Farnham, William F ^b  

^a CLARK UNIVERSITY   (United States)

^b UNIVERSITY OF PORTSMOUTH   (United Kingdom)

Author keywords

Cyphelloid fungi; Euagarics clade; Marine homobasidiomycetes; Morphological reduction; Multilocus rDNA analyses

Indexed keywords

FUNGUS;

AGARICALES; BACTERIA (MICROORGANISMS); BASIDIOMYCOTA; DILSEA CARNOSA; FUNGI; GLOIOCEPHALA; HOMOBASIDIOMYCETES; NIA; RHIZOPHORACEAE; RHODOPHYTA;

EID: 33645534248     PISSN: 00029122     EISSN: 00029122     Source Type: Journal    
DOI: 10.3732/ajb.93.4.547     Document Type: Article

References (41)

1. ALTSCHUL, S. F., T. L. MADDEN, A. A. SCHÄ FFER, J. ZHANG, Z. ZHANG, W. MILLER, AND D. J. LIPMAN. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402.
2. BINDER, M., AND D. S. HIBBETT. 2002. Higher-level phylogenetic relationships of homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions. Molecular Phylogenetics and Evolution 22: 76-90.
3. Binder M., D.S. Hibbett, and H.-P. Molitoris. 2001. Phylogenetic relationships of the marine gasteromycete Nia vibrissa. Mycologia 93: 679-688.
4. BRUNS, T. D., T. M. SZARO, M. GARDES, K. W. CULLINGS, J. J. PAN, D. L. TAYLOR, T. R. HORTON, A. M. KRETZER, M. GARBELOTTO, AND Y. LI. 1998. A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis. Molecular Ecology 7: 257-272.
5. BODENSTEINER, P., M. BINDER, J.-M. MONCALVO, R. AGERER, AND D. S. HIBBETT. 2004. Phylogenetic relationships of cyphelloid homobasidiomycetes. Molecular Phylogenetics and Evolution 33: 501-515.
6. CHEMIN, E. 1921. Action d'un Champignon parasite sur Dilsea edulis Stackhouse. Compte rendu hebdomadaire des Séances de l'Académie des Sciences (Paris) 172: 614-617.
7. CUNNINGHAM, C. W. 1997. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirical testing an iterative procedure for choosing among phylogenetic methods. Systematic Biology 46: 464-478.
8. DE QUEIROZ, A. 1993. For consensus (sometimes). Systematic Biology 42: 368-372.
9. DESJARDIN, D. E., L. MARTÍNEZ-PECK, AND M. RAICHENBERG. 1995. An unusual psychrophilic aquatic agaric from Argentina. Mycologia 87: 547-550.
10. HIBBETT, D. S. 1996. Phylogenetic evidence for horizontal transmission of group 1 introns in the nuclear ribosomal DNA of mushroom-forming fungi. Molecular Biology and Evolution 13: 903-917.
11. HIBBETT, D. S. 2004. Trends in morphological evolution in homobasidiomycetes inferred using maximum likelihood: a comparison of binary and multistate approaches. Systematic Biology 53: 891-915.
12. HIBBETT, D. S., AND M. BINDER. 2001. Evolution of marine mushrooms. Biological Bulletin 201: 319-322.
13. HIBBETT, D. S., AND M. BINDER. 2002. Evolution of complex fruiting-body morphologies in homobasidiomycetes. Proceedings of the Royal Society London, B, Biological Sciences 269: 1963-1969.
14. HIBBETT, D. S., E. M. PINE, E. LANGER, G. LANGER, AND M. J. DONOGHUE. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proceedings of the National Academy of Sciences, USA 94: 12002-12006.
15. HYDE, K. D., V. V. SARMA, AND E. B. G. JONES. 2000. Morphology and taxonomy of higher marine fungi. In K. D. Hyde and S. B. Pointing [eds.], Marine mycology: a practical approach, 172-204. Fungal Diversity Research Series 1, Fungal Diversity Press, Hong Kong, China.
16. INDERBITZIN, P., AND D. E. DESJARDIN. 1999. A new halotolerant species of Physalacria from Hong Kong. Mycologia 91: 666-668.
17. KIRK, P. M., P. F. CANNON, J. C. DAVID, AND J. A. STALPERS. 2001. Ainsworth and Bisby's dictionary of the Fungi, 9th ed. CAB International, Wallingford, Oxon, UK.
18. KISHINO, H., AND M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 29: 170-179.
19. KOHLMEYER, J., AND E. KOHLMEYER. 1979. Marine mycology: the higher Fungi. Academic Press, New York, New York, USA.
20. LEE, S. B., AND J. W. TAYLOR. 1990. Isolation of DNA from fungal mycelia and single cells. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White [eds.], PCR protocols: a guide to methods and applications, 282-287. Academic Press, San Diego, California, USA.
21. MADDISON, D. R., AND W. P. MADDISON. 2000. MacClade 4: analysis of phylogeny and character evolution. Sinauer, Sunderland, Massachusetts, USA.
22. MAIRE, R., AND E. CHEMIN. 1922. Un nouveau Pyrénomycète marin. Compte rendu hebdomadaire des Sèances de l'Acadèmie des Sciences (Paris) 175: 319-321.
23. MATHENY, P. B. 2004. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics and Evolution 35: 1-20.
24. MONCALVO, J.-M., F. M. LUTZONI, S. A. REHNER, J. JOHNSON, AND R. VILGALYS. 2000. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic Biology 49: 278-305.
25. MONCALVO, J.-M., R. VILGALYS, S. A. REDHEAD, J. E. JOHNSON, T. Y. JAMES, M. C. AIME, V. HOFSTETTER, S. J. W. VERDUIN, E. LARSSON, T. J. BARONI, R. G. THORN, S. JACOBSSON, H. CLÉMENÇON, AND MILLER K JR. 2002. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution 23: 357-400.
26. MOORE, R. T., AND S. P. MEYERS. 1959. Thalassiomycetes. I. Principles of delimitation of the marine mycota with description of a new aquatically adapted deuteromycete genus. Mycologia 88: 871-876.
27. NIXON, K. C. 1999. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
28. PETERSEN, R. H., K. W. HUGHES, S. A. REDHEAD, N. PSURTSEVA, AND A. S. METHVEN. 1999. Mating systems in the Xerulaceae (Agaricales, Basidiomycotina): Flammulina. Mycoscience 40: 411-426.
29. PORTER, D., AND W. F. FARNHAM. 1986. Mycaureola dilseae, a marine basidiomycete parasite of the red alga, Dilsea carnosa. Transactions of the British Mycological Society 87: 575-582.
30. POSADA, D., AND K. A. CRANDALL. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50: 580-601.
31. RONQUIST, F., AND J. P. HUELSENBECK. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
32. SHIMODAIRA, H., AND M. HASEGAWA. 1999. Multiple comparison of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114-1116.
33. SIKES, D. S., AND P. O. LEWIS. 2001. Beta software, version 1. PAUPRat: PAUP* implementation of the parsimony ratchet. Distributed by the authors, Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut, USA. Available at website http://viceroy.eeb.uconn.edu/ paupratweb/pauprat.htm.
34. STANGER-HALL, K., AND C. W. CUNNINGHAM. 1998. Support for a monophyletic Lemuriformes: overcoming incongruence between data partitions. Molecular Biology and Evolution 15: 1572-1577.
35. SWOFFORD, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, Massachusetts, USA.
36. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, AND D. G. HIGGINS. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882.
37. VILGALYS, R., AND M. HESTER. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
38. WHITE, T. J., T. D. BRUNS, S. LEE, AND J. TAYLOR. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White [eds.], PCR protocols: a guide to methods and applications, 315-322. Academic Press, San Diego, California, USA.
39. WILLIAMS, P. L., AND W. M. FITCH. 1990. Phylogeny determination using the dynamically weighted parsimony method. Methods in Enzymology 183: 615-626.
40. YANG, Z. 1994. Estimating the pattern of nucleotide substitution. Journal of Molecular Evolution 39: 105-111.
41. ZUKER, M., D. H. MATHEWS, AND D. H. TURNER. 1999. Algorithms and thermodynamics for rna secondary structure prediction. In J. Barciszewski and B. F. C. Clark [eds.], A practical guide in RNA biochemistry and biotechnology, 11-43. NATO ASI Series, Kluwer, Dordrecht, Netherlands.