Mapping of Crossover Sites Using DNA Microarrays

Methods in Molecular Biology

Volumn 745, Issue , 2011, Pages 117-134

  Chen, Stacy Y ^a   Fung, Jennifer C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

crossover; crossover homeostasis; crossover interference; direct allelic scanning; Meiosis, recombination; noncrossover; S96; YJM789

Indexed keywords

CHROMOSOME; DNA MICROARRAY; HOMEOSTASIS; HUMAN CELL; MEIOTIC RECOMBINATION; MICROARRAY ANALYSIS; ARTICLE; CROSSING OVER; GENETICS; METHODOLOGY; POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE;

CROSSING OVER, GENETIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE;

EID: 80053320837     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-129-1_8     Document Type: Chapter

References (18)

1. Roeder, G.S. (1997) Meiotic chromosomes: it takes two to tango. Genes Dev 11, 2600–2621.
2. Zickler, D., and Kleckner, N. (1999) Meiotic chromosomes: integrating structure and function. Annu Rev Genet 33, 603–754.
3. Whitby, M.C. (2005) Making crossovers during meiosis. Biochem Soc Trans 33, 1451–1455.
4. Hassold, T. (2007) The origin of human ane-uploidy: where we have been, where we are going. Hum Mol Genet 16, 203–208.
5. Hillers, K.J. (2004) Crossover interference. Curr Biol 14, R1036–R1037.
6. Jones, G.H. (1984) The control of chiasma distribution. Symp Soc Exp Biol 38, 293–320.
7. Muller, H. (1916) The mechanism of crossing over. Am Nat 50, 193–434.
8. Martini, E., Diaz, R.L., Hunter, N., and Keeney, S. (2006) Crossover homeostasis in yeast meiosis. Cell 126, 285–295.
9. Winzeler, E.A., Richards, D.R., Conway, A.R., Goldstein, A.L., Kalman, S., McCullough, M.J., McCusker, J.H., Stevens, D.A., Wodicka, L., Lockhart, D.J., and Davis, R.W. (1998) Direct allelic variation scanning of the yeast genome. Science 281, 1194–1197.
10. Chen, S.Y., Tsubouchi, T., Rockmill, B., Sandler, J.S., Richards, D.R., Vader, G., Hochwagen, A., Roeder, G.S., and Fung, J.C. (2008) Global analysis of the meiotic crossover landscape. Dev Cell 15, 401–415.
11. McPeek, M.S., and Speed, T.P. (1995) Modeling interference in genetic recombination. Genetics 139, 1031–1044.
12. Zhao, H., Speed, T.P., and McPeek, M.S. (1995) Statistical analysis of crossover interference using the chi-square model. Genetics 139, 1045–1056.
13. Affymetrix. (2005) GeneChip expression analysis technical manual with specific protocols for using the GeneChip hybridization, wash, and stain kit.
14. Richards, D. (2004) Allelescan users manual. http://genomics.stanford.edu/Allelescan_ user_manual.pdf
15. Okimoto, R., and Dodgson, J.B. (1996) Improved PCR amplification of multiple specific alleles (PAMSA) using internally mismatched primers. Biotechniques 21, 20–22, 24, 26.
16. Qiagen. (2001) Qiagen Genomic DNA handbook.
17. Affymetrix. http://www.affymetrix.com.
18. Mancera, E., Bourgon, R., Brozzi, A., Huber, W., and Steinmetz, L.M. (2008) High-resolution mapping of meiotic crossovers and non-crossovers in yeast. Nature 454, 479–485.