Assessment of the genetic diversity and population structure of lotus cultivars grown in China by amplified fragment length polymorphism

Journal of the American Society for Horticultural Science

Volumn 136, Issue 5, 2011, Pages 339-349

  Fu, Jie ^a   Xiang, Qiaoyan ^a   Zeng, Xianbao ^b   Yang, Mei ^a   Wang, Ying ^a   Liu, Yanling ^a  

^a Wuhan Institute of Botany Chinese Academy of Sciences   (China)

^b Lotus Center of East lake Scenic Area   (China)

Author keywords

Genetic variation; Molecular marker; Nelumbo

Indexed keywords

NELUMBO; NELUMBO LUTEA; NELUMBO NUCIFERA;

EID: 80053297357     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.136.5.339     Document Type: Article

References (35)

1. Borsch, T. and B. Wilhelm. 1994. Classification and distribution of the genus Nelumbo Adans (Nelumbonaceae). Beitrage zur Biologie der Pflanzen 68:421-450.
2. Chen, Y.Y., R.C. Zhou, X.C. Lin, K.Q. Wu, X.E. Qian, and S.Z. Huang. 2008. ISSR analysis of genetic diversity in sacred lotus cultivars. Aquat. Bot. 89:311-316.
3. Doyle, J.L. and J.J. Doyle. 1990. Isolation of plant DNA from fresh tissue. Focus 12:13-15.
4. Ge, X.J., Y. Yu, Y.M. Yuan, H.W. Huang, and C. Yan. 2005. Genetic diversity and geographic differentiation in endangered Ammopiptanthus (Leguminosae) populations in desert regions of northwest China as revealed by ISSR analysis. Ann. Bot. (Lond.) 95:843-851.
5. Guo, H.B., S. Li, J. Peng, and W. Ke. 2007. Genetic diversity of Nelumbo accessions revealed by RAPD. Genet. Resources Crop Evol. 54:741-748.
6. Han, Y.C., C.Z. Teng, F.H. Chang, G.W. Robert, M.Q. Zhou, Z.L. Hu, and Y.C. Song. 2007a. Analyses of genetic relationships in Nelumbo nucifera using nuclear ribosomal ITS sequence data, ISSR and RAPD markers. Aquat. Bot. 87:141-146.
7. Han, Y.C., C.Z. Teng, G. Wahiti, M.Q. Zhou, Z.L. Hu, and Y.C. Song. 2009. Mating system and genetic diversity in natural populations of Nelumbo nucifera (Nelumbonaceae) detected by ISSR markers. Plant Syst. Evol. 277:13-20.
8. Han, Y.C., C.Z. Teng, S. Zhong, M.Q. Zhou, Z.L. Hu, and Y.C. Song. 2007b. Genetic variation and clonal diversity in populations of Nelumbo nucifera (Nelumbonaceae) in central China detected by ISSR markers. Aquat. Bot. 86:69-75.
9. Huang, X.Q., J.Y. Chen, and G.C. Huang. 1992. Preliminary studies on biosystematical relationship between the two Nelumbo species. Acta Hort. Sinica 19:164-170.
10. Kanazawa, A., S. Watanabe, T. Nakamoto, N. Tsutsumi, and A. Hirai. 1998. Phylogenetic relationships in the genus Nelumbo based on polymorphism and quantitative variations in mitochondrial DNA. Genes Genet. Syst. 73:39-44.
11. Kubo, N., M. Hirai, A. Kaneko, D. Tanaka, and K. Kasumi. 2009. Classification and diversity of sacred and American Nelumbo species: The genetic relationships of flowering lotus cultivars in Japan using SSR markers. Plant Genet. Resources 7:260-270.
12. Li, Z., X. Liu, R.W. Gituru, N. Juntawong, M. Zhou, and L. Chen. 2010. Genetic diversity and classification of Nelumbo germplasm of different origins by RAPD and ISSR analysis. Sci. Hort. 125:724-732.
13. Masuda, J.I., T. Urakawa, Y. Ozaki, and H. Okubo. 2006. Short photoperiod induces dormancy in lotus (Nelumbo nucifera). Ann. Bot. (Lond.) 97:39-45.
14. Mukherjee, P.K., K. Saha, J. Das, M. Pal, and B.P. Saha. 1997. Studies on the antiinflammatory activity of rhizomes of Nelumbo nucifera. Planta Med. 63:367-369.
15. Na, A., H.B. Guo, and W.D. Ke. 2009. Genetic variation in rhizome lotus (Nelubmo nucifera Gaertn. ssp. nucifera) germplasm from China assessed by RAPD markers. Agr. Sci. China 8:31-39.
16. Ni, X.M. and J.R. Zhao. 1987. Chinese lotus. Science Press, Beijing, China.
17. Oraguzie, N.C., S.E. Gardiner, H.C.M. Basset, M. Stefanati, R.D. Ball, V.G.M. Bus, and A.G. White. 2001. Genetic diversity and relationships in Malus sp. germplasm collections as determined by randomly amplified polymorphic DNA. J. Amer. Soc. Hort. Sci. 126:318-328.
18. Pan, L., Z. Quan, S. Li, H. Liu, X. Huang, W. Ke, and Y. Ding. 2007. Isolation and characterization of microsatellite markers in the sacred lotus (Nelumbo nucifera Gaertn.). Mol. Ecol. Notes 7:1054-1056.
19. Pan, L., Q. Xia, Z. Quan, H. Liu, W. Ke, and Y. Ding. 2010. Development of novel EST-SSRs from sacred Lotus (Nelumbo nucifera Gaertn) and their utilization for the genetic diversity analysis of N. nucifera. J. Hered. 101:71-82.
20. Peng, Y.L., Y.C. Han, L. Wang, C.Z. Teng, M.Q. Zhou, Z.L. Hu, and Y.C. Song. 2004. Genetic diversity in lotus (Nelumbo) accessions revealed by AFLP technique. Mol. Plant Breed. 2:823-827.
21. Portis, E., L. Barchi, A. Acquadro, J.I. Macua, and S. Lanteri. 2005. Genetic diversity assessment in cultivated cardoon by AFLP (amplified fragment length polymorphism) and microsatellite markers. Plant Breed. 124:299-304.
22. Pritchard, J.K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
23. Qian, J.Q. 2002. Cardiovascular pharmacological effects of bisbenzylisoquinoline alkaloid derivatives. Acta Pharmacol. Sin. 23:1086-1092.
24. Rohlf, F.J. 2000. NTSYS-pc: Numerical taxonomy and multivariate analysis system, Version 2.1. Exeter Software, Setauket, NY.
25. Savolainen, V. and M.W. Chase. 2003. A decade of progress in plant molecular phylogenetics. Trends Genet. 19:717-724.
26. Sinha, S., P.K. Mukherjee, K. Mukherjee, M. Pal, S.C. Mandal, and B.P. Saha. 2000. Evaluation of antipyretic potential of Nelumbo nucifera stalk extract. Phytother. Res. 14:272-274.
27. Tian, H.L., X.Q. Chen, J.X. Wang, J.H. Xue, J. Wen, G. Mitchell, and S.L. Zhou. 2008a. Development and characterization of microsatellite loci for lotus (Nelumbo nucifera). Conserv. Genet. 9: 1385-1388.
28. Tian, H.L., J.H. Xue, J. Wen, G. Mitchell, and S.L. Zhou. 2008b. Genetic diversity and relationships of lotus (Nelumbo) cultivars based on allozyme and ISSR markers. Sci. Hort. 116:421-429.
29. Torres-Díaz, C., E. Ruiz, F. González, G. Fuentes, and L.A. Cavieres. 2007. Genetic diversity in Nothofagus alessandrii (Fagaceae), an endangered endemic tree species of the coastal Maulino Forest of central Chile. Ann. Bot. (Lond.) 100:75-82.
30. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T.V.D. Lee, M. Hornes, A. Friters, J. Pot, J. Paleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23:4407-4414.
31. Wang, Q.C. and X.Y. Zhang. 2005. Pictures and explanation of Chinese lotus species. China Forestry Publishing House, Beijing, China.
32. Wang, X., P.A. Wadl, C. Pounders, R.N. Trigiano, R.I. Cabrera, B.E. Scheffler, M. Pooler, and T.A. Rinehart. 2011. Evaluation of genetic diversity and pedigree within crapemyrtle cultivars using simple sequence repeat markers. J. Amer. Soc. Hort. Sci. 136:116-128.
33. Wiersema, J.H. 1997. Nelumboanaceae. Flora of North America. Vol. 3. 5 July 2011. .
34. Zhang, X.Y. and Q.C. Wang. 2006. Preliminary study of the ecotypes of genetic resources of tropical louts. Landscape Plants 22:82-85.
35. Zou, X., X. Zhao, and X. Jin. 1997. Sacred lotus in China. Jindun Press, Beijing, China.