Autoregulated splicing of muscleblind-like 1 (MBNL1) Pre-mRNA

Journal of Biological Chemistry

Volumn 286, Issue 39, 2011, Pages 34224-34233

  Gates, Devika P ^a   Coonrod, Leslie A ^a   Berglund, J Andrew ^a  

^a UNIVERSITY OF OREGON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRANCH POINTS; CELLULAR LOCALIZATION; CENTRAL COMPONENT; CONSERVED REGIONS; FOOTPRINTING; INTRON 4; INTRONIC SEQUENCES; MYOTONIC DYSTROPHY; PRE-MRNA; RESPONSE ELEMENTS; SPLICE SITE; SPLICING FACTORS; VERTEBRATE GENOMES;

GENES;

MESSENGER RNA; MUSCLEBLIND LIKE 1; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; ARTICLE; AUTOREGULATION; CONTROLLED STUDY; EXON; GENE MAPPING; HUMAN; HUMAN CELL; INTRON; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; RNA SPLICING; RNA STRUCTURE;

EXONS; HELA CELLS; HUMANS; INTRONS; RESPONSE ELEMENTS; RNA PRECURSORS; RNA SPLICE SITES; RNA SPLICING; RNA-BINDING PROTEINS;

VERTEBRATA;

EID: 80053213247     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.236547     Document Type: Article

References (44)

1. Wang, E. T., Sandberg, R., Luo, S., Khrebtukova, I., Zhang, L., Mayr, C., Kingsmore, S. F., Schroth, G. P., and Burge, C. B. (2008) Nature 456, 470-476
2. Pan, Q., Shai, O., Lee, L. J., Frey, B. J., and Blencowe, B. J. (2008) Nat. Genet. 40, 1413-1415
3. Wahl, M. C., Will, C. L., and Lührmann, R. (2009) Cell 136, 701-718
4. Artero, R., Prokop, A., Paricio, N., Begemann, G., Pueyo, I., Mlodzik, M., Perez-Alonso, M., and Baylies, M. K. (1998) Dev. Biol. 195, 131-143
5. Begemann, G., Paricio, N., Artero, R., Kiss, I., Pérez-Alonso, M., and Mlodzik, M. (1997) Development 124, 4321-4331
6. Ranum, L. P., and Day, J. W. (2004) Am. J. Hum. Genet. 74, 793-804
7. Ranum, L. P., and Cooper, T. A. (2006) Annu. Rev. Neurosci. 29, 259-277
8. Osborne, R. J., and Thornton, C. A. (2006) Hum. Mol. Genet. 15, R162-R169
9. Fardaei, M., Larkin, K., Brook, J. D., and Hamshere, M. G. (2001) Nucleic Acids Res. 29, 2766-2771
10. Fardaei, M., Rogers, M. T., Thorpe, H. M., Larkin, K., Hamshere, M. G., Harper, P. S., and Brook, J. D. (2002) Hum. Mol. Genet. 11, 805-814
11. Charlet-B, N., Savkur, R. S., Singh, G., Philips, A. V., Grice, E. A., and Cooper, T. A. (2002) Mol. Cell 10, 45-53
12. Ladd, A. N., Taffet, G., Hartley, C., Kearney, D. L., and Cooper, T. A. (2005) Mol. Cell. Biol. 25, 6267-6278
13. Lee, J. E., and Cooper, T. A. (2009) Biochem. Soc. Trans. 37, 1281-1286
14. Terenzi, F., and Ladd, A. N. (2010) RNA Biol. 7, 43-55
15. Lin, X., Miller, J. W., Mankodi, A., Kanadia, R. N., Yuan, Y., Moxley, R. T., Swanson, M. S., and Thornton, C. A. (2006) Hum. Mol. Genet. 15, 2087-2097
16. Bejerano, G., Pheasant, M., Makunin, I., Stephen, S., Kent, W. J., Mattick, J. S., and Haussler, D. (2004) Science 304, 1321-1325
17. Goers, E. S., Purcell, J., Voelker, R. B., Gates, D. P., and Berglund, J. A. (2010) Nucleic Acids Res. 38, 2467-2484
18. Du, H., Cline, M. S., Osborne, R. J., Tuttle, D. L., Clark, T. A., Donohue, J. P., Hall, M. P., Shiue, L., Swanson, M. S., Thornton, C. A., and Ares, M., Jr. (2010) Nat. Struct. Mol. Biol. 17, 187-193
19. Pedersen, J. S., Bejerano, G., Siepel, A., Rosenbloom, K., Lindblad-Toh, K., Lander, E. S., Kent, J., Miller, W., and Haussler, D. (2006) PLoS Comput. Biol. 2, e33
20. Warf, M. B., Diegel, J. V., Von Hippel, P. H., and Berglund, J. A. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 9203-9208
21. Gao, K., Masuda, A., Matsuura, T., and Ohno, K. (2008) Nucleic Acids Res. 36, 2257-2267
22. Reed, R. (1989) Genes Dev. 3, 2113-2123
23. Gooding, C., Clark, F., Wollerton, M. C., Grellscheid, S. N., Groom, H., and Smith, C. W. (2006) Genome Biol. 7, R1
24. Mount, S. M. (1982) Nucleic Acids Res. 10, 459-472
25. Zhang, M. Q. (1998) Hum Mol. Genet. 7, 919-932
26. Murray, J. I., Voelker, R. B., Henscheid, K. L., Warf, M. B., and Berglund, J. A. (2008) Genome Biol. 9, R97
27. Warf, M. B., and Berglund, J. A. (2007) RNA 13, 2238-2251
28. Merino, E. J., Wilkinson, K. A., Coughlan, J. L., and Weeks, K. M. (2005) J. Am. Chem. Soc. 127, 4223-4231
29. Das, R., Laederach, A., Pearlman, S. M., Herschlag, D., and Altman, R. B. (2005) RNA 11, 344-354
30. Low, J. T., and Weeks, K. M. (2010) Methods 52, 150-158
31. Reuter, J. S., and Mathews, D. H. (2010) BMC Bioinformatics 11, 129
32. Ho, T. H., Charlet-B, N., Poulos, M. G., Singh, G., Swanson, M. S., and Cooper, T. A. (2004) EMBO J. 23, 3103-3112
33. Sathirapongsasuti, J. F., Sathira, N., Suzuki, Y., Huttenhower, C., and Sugano, S. (2011) Nucleic Acids Res. 39, 1967-1979
34. Wilkinson, K. A., Merino, E. J., and Weeks, K. M. (2006) Nat. Protoc. 1, 1610-1616
35. Llorian, M., Schwartz, S., Clark, T. A., Hollander, D., Tan, L. Y., Spellman, R., Gordon, A., Schweitzer, A. C., De la Grange, P., Ast, G., and Smith, C. W. (2010) Nat. Struct. Mol. Biol. 17, 1114-1123
36. Wollerton, M. C., Gooding, C., Wagner, E. J., Garcia-Blanco, M. A., and Smith, C. W. (2004) Mol. Cell 13, 91-100
37. Tran, H., Gourrier, N., Lemercier-Neuillet, C., Dhaenens, C. M., Vautrin, A., Fernandez-Gomez, F. J., Arandel, L., Carpentier, C., Obriot, H., Eddarkaoui, S., Delattre, L., van Brussels, E., Holt, I., Morris, G. E., Sablonnière, B., Buée, L., Charlet-Berguerand, N., Schraen-Maschke, S., Furling, D., Behm-Ansmant, I., Branlant, C., Caillet-Boudin, M. L., and Sergeant, N. (2011) J. Biol. Chem. 286, 16435-16446
38. Black, D. L. (2003) Annu. Rev. Biochem. 72, 291-336
39. Smith, C. W., Chu, T. T., and Nadal-Ginard, B. (1993) Mol. Cell. Biol. 13, 4939-4952
40. Chen, S., Anderson, K., and Moore, M. J. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 593-598
41. Grossman, J. S., Meyer, M. I., Wang, Y. C., Mulligan, G. J., Kobayashi, R., and Helfman, D. M. (1998) RNA 4, 613-625
42. Kino, Y., Washizu, C., Oma, Y., Onishi, H., Nezu, Y., Sasagawa, N., Nukina, N., and Ishiura, S. (2009) Nucleic Acids Res. 37, 6477-6490
43. Teplova, M., and Patel, D. J. (2008) Nat. Struct. Mol. Biol. 15, 1343-1351
44. Fujita, P. A., Rhead, B., Zweig, A. S., Hinrichs, A. S., Karolchik, D., Cline, M. S., Goldman, M., Barber, G. P., Clawson, H., Coelho, A., Diekhans, M., Dreszer, T. R., Giardine, B. M., Harte, R. A., Hillman-Jackson, J., Hsu, F., Kirkup, V., Kuhn, R. M., Learned, K., Li, C. H., Meyer, L. R., Pohl, A., Raney, B. J., Rosenbloom, K. R., Smith, K. E., Haussler, D., and Kent, W. J. (2011) Nucleic Acids Res. 39, D876-D882