Current best practices for respiratory virus testing

Journal of Clinical Microbiology

Volumn 49, Issue 9 SUPPL., 2011, Pages

  Ginocchio, Christine C ^a   McAdam, Alexander J ^b,c  

^a DONALD AND BARBARA ZUCKER SCHOOL OF MEDICINE AT HOFSTRA NORTHWELL   (United States)

^b BOSTON CHILDREN S HOSPITAL   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAMANTANE DERIVATIVE; AMANTADINE; ANTIBODY; OSELTAMIVIR; RIBAVIRIN; RIMANTADINE; ZANAMIVIR;

2009 H1N1 INFLUENZA; ANTIBIOTIC THERAPY; ANTIGEN DETECTION; ANTIVIRAL RESISTANCE; CELL CULTURE; CLINICAL EFFECTIVENESS; CLINICAL LABORATORY; CLINICAL PRACTICE; CONFERENCE PAPER; DIAGNOSTIC ACCURACY; DIAGNOSTIC ERROR; DIAGNOSTIC PROCEDURE; DIAGNOSTIC TEST; DISEASE COURSE; DISEASE TRANSMISSION; DRUG COST; DRUG RESISTANCE; FLUORESCENT ANTIBODY TECHNIQUE; HEALTH CARE PERSONNEL; HUMAN; INFECTION CONTROL; INFLUENZA; INFLUENZA A (H1N1); INFLUENZA A (H3N2); INFLUENZA VIRUS A; INTERMETHOD COMPARISON; MICROORGANISM DETECTION; MOLECULAR DIAGNOSIS; NASOPHARYNGEAL ASPIRATION; NONHUMAN; NOSE SMEAR; NUCLEIC ACID AMPLIFICATION; PATIENT CARE; POINT OF CARE TESTING; PRIORITY JOURNAL; PROCESS DEVELOPMENT; QUALITY CONTROL; RAPID ANTIGEN DIRECT TEST; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY VIRUS; SENSITIVITY AND SPECIFICITY; THROAT CULTURE; VIRUS CULTURE; VIRUS DETECTION; VIRUS EXAMINATION; VIRUS IDENTIFICATION; VIRUS ISOLATION;

EID: 80053205530     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00698-11     Document Type: Conference Paper

References (54)

1. Abu-Diab, A., et al. 2008. Comparison between pernasal flocked swabs and nasopharyngeal aspirates for detection of common respiratory viruses in samples from children. J. Clin. Microbiol. 46:2414-2417.
2. Andresen, D. N., and A. M. Kesson. 2010. High sensitivity of a rapid immunochromatographic test for detection of influenza A virus 2009 H1N1 in nasopharyngeal aspirates from young children. J. Clin. Microbiol. 48:2658-2659.
3. Anonymous. 2009. Update: influenza activity-United States, September 28, 2008-January 31, 2009. MMWR Morb. Mortal. Wkly. Rep. 58:115-119.
4. Balada-Llasat, J. M., H. LaRue, C. Kelly, L. Rigali, and P. Pancholi. 2011. Evaluation of commercial ResPlex II v2.0, MultiCode-PLx, and xTAG respiratory viral panels for the diagnosis of respiratory viral infections in adults. J. Clin. Virol. 50:42-45.
5. Blyth, C. C., J. R. Iredell, and D. E. Dwyer. 2009. Rapid-test sensitivity for novel swine-origin influenza A (H1N1) virus in humans. N. Engl. J. Med. 361:2493.
6. Borek, A. P., S. H. Clemens, V. K. Gaskins, D. Z. Aird, and A. Valsamakis. 2006. Respiratory syncytial virus detection by Remel Xpect, Binax Now RSV, direct immunofluorescent staining, and tissue culture. J. Clin. Microbiol. 44:1105-1107.
7. Bourgeois, F. T., C. Valim, A. J. McAdam, and K. D. Mandl. 2009. Relative impact of influenza and respiratory syncytial virus in young children. Pediatrics 124:e1072-e1080.
8. Casiano-Colón, A. E., B. B. Hulbert, T. K. Mayer, E. E. Walsh, and A. R. Falsey. 2003. Lack of sensitivity of rapid antigen tests for the diagnosis of respiratory syncytial virus infection in adults. J. Clin. Virol. 28:169-174. (Pubitemid 37040869)
9. Chen, L. F., et al. 2011. Cluster of oseltamivir-resistant 2009 pandemic influenza A (H1N1) virus infections on a hospital ward among immunocompromised patients-North Carolina, 2009. J. Infect. Dis. 203:838-846.
10. Cheng, P. K., et al. 2010. Performance of laboratory diagnostics for the detection of influenza A(H1N1)v virus as correlated with the time after symptom onset and viral load. J. Clin. Virol. 47:182-185.
11. Cruz, A. T., A. C. Cazacu, J. M. Greer, and G. J. Demmler. 2007. Performance of a rapid assay (Binax NOW) for detection of respiratory syncytial virus at a children's hospital over a 3-year period. J. Clin. Microbiol. 45: 1993-1995. (Pubitemid 46933942)
12. Daley, P., S. Castriciano, M. Chernesky, and M. Smieja. 2006. Comparison of flocked and rayon swabs for collection of respiratory epithelial cells from uninfected volunteers and symptomatic patients. J. Clin. Microbiol. 44:2265-2267. (Pubitemid 43902191)
13. David, P. H., S. Goldberg, and C. Ginocchio. 2009. Acute pericarditis caused by human metapneumovirus. Infect. Dis. Clin. Practice 17:283-285.
14. De la Tabla, V. O., et al. 2010. Comparison of combined nose-throat swabs with nasopharyngeal aspirates for detection of pandemic influenza A/H1N1 2009 virus by real-time reverse transcriptase PCR. J. Clin. Microbiol. 48: 3492-3495.
15. Gimeno, C., et al. 2010. Sensitivity of a marketed immunochromatographic assay specifically targeting the pandemic influenza A/H1N1 2009 virus. Diagn. Microbiol. Infect. Dis. 68:80-82.
16. Ginocchio, C. C., et al. 2009. Evaluation of multiple test methods for the detection of the novel 2009 influenza A (H1N1) during the New York City outbreak. J. Clin. Virol. 45:191-195.
17. Glezen, W. P. 2008. Clinical practice. Prevention and treatment of seasonal influenza. N. Engl. J. Med. 359:2579-2585.
18. Gubareva, L. V., et al. 2010. Comprehensive assessment of 2009 pandemic influenza A (H1N1) virus drug susceptibility in vitro. Antivir. Ther. 15:1151-1159.
19. Hall, C. B. 2001. Respiratory syncytial virus and parainfluenza virus. N. Engl. J. Med. 344:1917-1928. (Pubitemid 32553362)
20. Hall, C. B., R. G. Douglas, Jr., and J. M. Geiman. 1975. Quantitative shedding patterns of respiratory syncytial virus in infants. J. Infect. Dis. 132:151-156.
21. Hall, C. B., C. E. Long, and K. C. Schnabel. 2001. Respiratory syncytial virus infections in previously healthy working adults. Clin. Infect. Dis. 33:792-796. (Pubitemid 32831835)
22. Hermos, C. R., S. O. Vargas, and A. J. McAdam. 2010. Human metapneumovirus. Clin. Lab. Med. 30:131-148.
23. Hernes, S. S., et al. 2011. Swabbing for respiratory viral infections in older patients: a comparison of rayon and nylon flocked swabs. Eur. J. Clin. Microbiol. Infect. Dis. 30:159-165.
24. Kawachi, S., et al. 2011. Multicenter prospective evaluation of a novel rapid immunochromatographic diagnostic kit specifically detecting influenza A H1N1 2009 virus. J. Clin. Virol. 51:68-72.
25. Lambert, S. B., K. M. Allen, R. C. Carter, and T. M. Nolan. 2008. The costof community-managed viral respiratory illnesses in a cohort of healthy preschool-aged children. Respir. Res. 9:11.
26. Landry, M. L. 2009. Developments in immunologic assays for respiratory viruses. Clin. Lab. Med. 29:635-647.
27. Landry, M. L., S. Cohen, and D. Ferguson. 2000. Impact of sample type on rapid detection of influenza virus A by cytospin-enhanced immunofluorescence and membrane enzyme-linked immunosorbent assay. J. Clin. Microbiol. 38:429-430. (Pubitemid 30043335)
28. Lee, B. Y., et al. 2010. To test or to treat? An analysis of influenza testing and antiviral treatment strategies using economic computer modeling. PLoS One 5:e11284.
29. Lee, N., et al. 2011. Viral clearance and inflammatory response patterns in adults hospitalized for pandemic 2009 influenza A(H1N1) virus pneumonia. Antivir. Ther. 16:237-247.
30. Leland, D. S., and C. C. Ginocchio. 2007. Role of cell culture for virus detection in the age of technology. Clin. Microbiol. Rev. 20:49-78. (Pubitemid 46167768)
31. Liao, R. S., L. L. Tomalty, A. Majury, and D. E. Zoutman. 2009. Comparison of viral isolation and multiplex real-time reverse transcription-PCR for confirmation of respiratory syncytial virus and influenza virus detection by antigen immunoassays. J. Clin. Microbiol. 47:527-532.
32. Lieberman, D., A. Shimoni, A. Keren-Naus, R. Steinberg, and Y. Shemer- Avni. 2009. Identification of respiratory viruses in adults: nasopharyngeal versus oropharyngeal sampling. J. Clin. Microbiol. 47:3439-3443.
33. Lieberman, D., A. Shimoni, Y. Shemer-Avni, A. Keren-Naos, and R. Shtainberg. 2010. Respiratory viruses in adults with community-acquired pneumonia. Chest 138:811-816.
34. McAdam, A. J., et al. 2004. Human metapneumovirus in children tested at a tertiary-care hospital. J. Infect. Dis. 190:20-26. (Pubitemid 38858400)
35. McAdam, A. J., and A. M. Riley. 2009. Developments in tissue culture detection of respiratory viruses. Clin. Lab. Med. 29:623-634.
36. Moore, C., et al. 2011. Evidence of person-to-person transmission of oseltamivir- resistant pandemic influenza A(H1N1) 2009 virus in a hematology unit. J. Infect. Dis. 203:18-24.
37. Mulrennan, S., et al. 2010. Pandemic influenza (H1N1) 2009 pneumonia: CURB-65 score for predicting severity and nasopharyngeal sampling for diagnosis are unreliable. PLoS One 5:e12849.
38. Ohrmalm, L., et al. 2010. Flocked nasal swab versus nasopharyngeal aspirate for detection of respiratory tract viruses in immunocompromised adults: a matched comparative study. BMC Infect. Dis. 10:340.
39. Pabbaraju, K., K. L. Tokaryk, S. Wong, and J. D. Fox. 2008. Comparison of the Luminex xTAG respiratory viral panel with in-house nucleic acid amplification tests for diagnosis of respiratory virus infections. J. Clin. Microbiol. 46:3056-3062.
40. Pabbaraju, K., et al. 2011. Comparison of a singleplex real-time RT-PCR assay and multiplex respiratory viral panel assay for detection of influenza "A" in respiratory specimens. Influenza Other Respi. Viruses 5:99-103.
41. Parrott, R. H., et al. 1961. Respiratory syncytial virus. II. Serologic studies over a 34-month period of children with bronchiolitis, pneumonia, and minor respiratory diseases. JAMA 176:653-657.
42. Patick, A. K. 2006. Rhinovirus chemotherapy. Antiviral Res. 71:391-396. (Pubitemid 44223757)
43. Preziosi, P. 2011. Influenza pharmacotherapy: present situation, strategies and hopes. Expert Opin. Pharmacother. 12:1523-1549.
44. Sambol, A. R., et al. 2010. Use of rapid influenza diagnostic tests under field conditions as a screening tool during an outbreak of the 2009 novel influenza virus: practical considerations. J. Clin. Virol. 47:229-233.
45. Sandora, T. J., et al. 2010. Test characteristics of commercial influenza assays for detecting pandemic influenza A (H1N1) in children. Pediatr. Infect. Dis. J. 29:261-262.
46. Selvarangan, R., D. Abel, and M. Hamilton. 2008. Comparison of BD Directigen EZ RSV and Binax NOW RSV tests for rapid detection of respiratory syncytial virus from nasopharyngeal aspirates in a pediatric population. Diagn. Microbiol. Infect. Dis. 62:157-161.
47. Sheu, T. G., et al. 2011. Dual resistance to adamantanes and oseltamivir among seasonal influenza A(H1N1) viruses: 2008-2010. J. Infect. Dis. 203: 13-17.
48. Specter, S. 2009. Clinical virology manual, 4th ed. ASM Press, Washington, DC.
49. Storch, G. A. 2000. Essentials of diagnostic virology, 1st ed. Churchill Livingstone, New York, NY.
50. Walsh, P., et al. 2008. Comparison of respiratory virus detection rates for infants and toddlers by use of flocked swabs, saline aspirates, and saline aspirates mixed in universal transport medium for room temperature storage and shipping. J. Clin. Microbiol. 46:2374-2376.
51. Welch, D. F., and C. C. Ginocchio. 2010. Role of rapid immunochromatographic antigen testing in diagnosis of influenza A virus 2009 H1N1 infection. J. Clin. Microbiol. 48:22-25.
52. Wong, S., K. Pabbaraju, B. E. Lee, and J. D. Fox. 2009. Enhanced viral etiological diagnosis of respiratory system infection outbreaks by use of a multitarget nucleic acid amplification assay. J. Clin. Microbiol. 47:3839-3845.
53. Yeh, E., et al. 2010. Preferential lower respiratory tract infection in swineorigin 2009 A(H1N1) influenza. Clin. Infect. Dis. 50:391-394.
54. Zhang, X. N., et al. 2010. Rupintrivir is a promising candidate for treating severe cases of Enterovirus-71 infection. World J. Gastroenterol. 16:201-209.