Engineering Thermoacidophilic Archaea using Linear DNA Recombination

Methods in Molecular Biology

Volumn 765, Issue , 2011, Pages 435-445

  Maezato, Yukari ^a   Dana, Karl ^a   Blum, Paul ^a  

^a UNIVERSITY OF NEBRASKA   (United States)

Author keywords

Archaeal recombineering; Cell line construction; Crenarchaeota; Hyperthermophiles; Linear DNA recombination

Indexed keywords

CONTROLLED STUDY; DNA RECOMBINATION; EUKARYOTE; EXTREMOPHILE; HOMOLOGOUS RECOMBINATION; HUMAN CELL; HYPERTHERMOPHILE; NONHUMAN; PHYLUM; SACCHAROLOBUS SOLFATARICUS; THERMOACIDOPHILIC ARCHAEON; ARTICLE; GENETIC ENGINEERING; GENETICS; SULFOLOBUS SOLFATARICUS;

ARCHAEA; CRENARCHAEOTA; EUKARYOTA; SULFOLOBALES; SULFOLOBUS SOLFATARICUS;

RECOMBINANT DNA;

DNA, RECOMBINANT; GENETIC ENGINEERING; HOMOLOGOUS RECOMBINATION; SULFOLOBUS SOLFATARICUS;

EID: 80052923532     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-197-0_26     Document Type: Chapter

References (26)

1. Wong J. H., Brown J. A., Suo Z., Blum P., Nohmi T., Ling H. (2010) Structural insight into dynamic bypass of the major cisplatin-DNA adduct by Y-family polymerase Dpo4. EMBO J 29, 2059–2069.
2. Miller P. S., Blum P. H. (2010) Extremophile-inspired strategies for enzymatic biomass sac-charification. Environ Technol 31, 1005–1015.
3. Verhaart M. R., Bielen A. A., van der Oost J., Stams A. J., Kengen S. W. (2010) Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal. Environ Technol 31, 993–1003.
4. Orell A., Navarro C. A., Arancibia R., Mobarec J. C., Jerez C. A. (2010) Life in blue: Copper resistance mechanisms of bacteria and Archaea used in industrial biomining of minerals. Biotechnol Adv doi:10.1016/j.biotechadv. 2010.07.003.
5. Blum P. (2001) Archaea, ancient microbes, extreme environments and the origin of life., Vol. 50, Academic Press, New York.
6. Blum P. (2008) Archaea, new models for prokaryotic biology Horizon Press, Norwich UK.
7. Sawitzke J. A., Thomason L. C., Costantino N., Bubunenko M., Datta S., Court D. L. (2007) Recombineering: in vivo genetic engineering in E. coli, S. enterica, and beyond. Methods Enzymol 421, 171–199.
8. Constantinesco F., Forterre P., Elie C. (2002) NurA, a novel 5’-3’ nuclease gene linked to rad50 and mre11 homologs of thermophilic Archaea. EMBO Rep 3, 537–542.
9. Nichols M. D., DeAngelis K., Keck J. L., Berger J. M. (1999) Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11. EMBO J 18, 6177–6188.
10. Seitz E. M., Brockman J. P., Sandler S. J., Clark A. J., Kowalczykowski S. C. (1998) RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange. Genes Dev 12, 1248–1253.
11. Sowers K. R., Blum P. H. DasSarma S. (2007) Gene transfer in archaea, in Methods for General and Molecular Microbiology (C. A. Reddy, T. J. B., J. A. Breznak, G. A. Marzluf, and T. M. Schmidt Ed.), American Society for Microbiology Press, Washington D.C.
12. Schelert J., Dixit V., Hoang V., Simbahan J., Drozda M., Blum P. (2004) Occurrence and characterization of mercury resistance in the hyperthermophilic archaeon Sulfolobus solfataricus by use of gene disruption. J Bacteriol 186, 427–437.
13. Worthington P., Hoang V., Perez-Pomares F., Blum P. (2003) Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus. J Bacteriol 185, 482–488.
14. Schelert J., Drozda M., Dixit V., Dillman A., Blum P. (2006) Regulation of mercury resistance in the crenarchaeote Sulfolobus solfataricus. J Bacteriol 188, 7141–7150.
15. Allen M. B. (1959) Studies with Cyanidium caldarium, an anomalously pigmented chlo-rophyte. Arch Mikrobiol 32, 270–277.
16. Brock T. D., Brock K. M., Belly R. T., Weiss R. L. (1972) Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch Mikrobiol 84, 54–68.
17. Sambrook J., Russell D. W. (2001) Molecular Cloning: A Laboratory Manual 3rd ed., vol. 2. 2.
18. Chong P. K., Burja A. M., Radianingtyas H., Fazeli A., Wright P. C. (2007) Proteome and transcriptional analysis of ethanol-grown Sulfolobus solfataricus P2 reveals ADH2, a potential alcohol dehydrogenase. J Proteome Res 6, 3985–3994.
19. Chong P. K., Burja A. M., Radianingtyas H., Fazeli A., Wright P. C. (2007) Proteome analysis of Sulfolobus solfataricus P2 propanol metabolism. J Proteome Res 6, 1430–1439.
20. Brouns S. J., Walther J., Snijders A. P., van de Werken H. J., Willemen H. L., Worm P., de Vos M. G., Andersson A., Lundgren M., Mazon H. F., van den Heuvel R. H., Nilsson P., Salmon L., de Vos W. M., Wright P. C., Bernander R., van der Oost J. (2006) Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment. J Biol Chem 281, 27378–27388.
21. Gratchev A., Strein P., Utikal J., Sergij G. (2003) Molecular genetics of Xeroderma pigmentosum variant. Exp Dermatol 12, 529–536.
22. Zhang H., Guengerich F. P. (2010) Effect of N2-guanyl modifications on early steps in catalysis of polymerization by Sulfolobus solfataricus P2 DNA polymerase Dpo4 T239W. J Mol Biol 395, 1007–1018.
23. Maaty W. S., Wiedenheft B., Tarlykov P., Schaff N., Heinemann J., Robison-Cox J., Valenzuela J., Dougherty A., Blum P., Lawrence C. M., Douglas T., Young M. J., Bothner B. (2009) Something old, something new, something borrowed; how the ther-moacidophilic archaeon Sulfolobus solfataricus responds to oxidative stress. PLoS One 4, e6964.
24. Higuchi R., Krummel B., Saiki R. K. (1988) A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. Nucleic Acids Res 16, 7351–7367.
25. Rolfsmeier M., Blum P. (1995) Purification and characterization of a maltase from the extremely thermophilic crenarchaeote Sulfolobus solfataricus. J Bacteriol 177, 482–485.
26. Jonuscheit M., Martusewitsch E., Stedman K. M., Schleper C. (2003) A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector. Mol Microbiol 48, 1241–1252.