메뉴 건너뛰기




Volumn 6, Issue 9, 2011, Pages

Unusual Loop-Sequence flexibility of the proximal RNA replication element in EMCV

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; ENCEPHALOMYOCARDITIS VIRUS; MENGO VIRUS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE SEQUENCE; RNA REPLICATION; RNA STRUCTURE; SEQUENCE ALIGNMENT; VIRUS MORPHOLOGY; VIRUS MUTATION; VIRUS REPLICATION; VIRUS STRAIN; ANIMAL; CELL LINE; CHEMISTRY; CONFORMATION; GENETICS; HELA CELL; HUMAN; MOUSE; PHYSIOLOGY;

EID: 80052851482     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0024818     Document Type: Article
Times cited : (2)

References (34)
  • 1
    • 67249146393 scopus 로고    scopus 로고
    • Saffold Virus, a Human Theiler's-Like Cardiovirus, is ubiquitous and causes infection early in life
    • Zoll J, Erkens-Hulshof S, Lanke K, Verduyn-Lunel F, Melchers WJG, et al. (2009) Saffold Virus, a Human Theiler's-Like Cardiovirus, is ubiquitous and causes infection early in life. Plos Pathogens 5: e1000416.
    • (2009) Plos Pathogens , vol.5
    • Zoll, J.1    Erkens-Hulshof, S.2    Lanke, K.3    Verduyn-Lunel, F.4    Melchers, W.J.G.5
  • 2
    • 2442672522 scopus 로고    scopus 로고
    • Regulation of picornavirus gene expression
    • Bedar KM, Semler BL, (2004) Regulation of picornavirus gene expression. Microbes Infect 6: 702-713.
    • (2004) Microbes Infect , vol.6 , pp. 702-713
    • Bedar, K.M.1    Semler, B.L.2
  • 3
    • 0038337684 scopus 로고    scopus 로고
    • Picornavirus genome: an overview
    • In: Semler BE, Wimmer E, editors, Washington, ASM Press
    • Agol VI, (2002) Picornavirus genome: an overview. In: Semler BE, Wimmer E, editors. Molecular Biology of Picornaviruses Washington ASM Press pp. 127-148.
    • (2002) Molecular Biology of Picornaviruses , pp. 127-148
    • Agol, V.I.1
  • 4
    • 0033960579 scopus 로고    scopus 로고
    • Interactions of viral protein 3CD and poly(rC) binding protein with the 5′ untranslated region of the poliovirus genome
    • Gamarnik AV, Andino R, (2000) Interactions of viral protein 3CD and poly(rC) binding protein with the 5′ untranslated region of the poliovirus genome. J Virol 74: 2219-2226.
    • (2000) J Virol , vol.74 , pp. 2219-2226
    • Gamarnik, A.V.1    Andino, R.2
  • 6
    • 0032146721 scopus 로고    scopus 로고
    • Switch from translation to RNA replication in a positive-stranded RNA virus
    • Gamarnik AV, Andino R, (1998) Switch from translation to RNA replication in a positive-stranded RNA virus. Genes Dev 12: 2293-2304.
    • (1998) Genes Dev , vol.12 , pp. 2293-2304
    • Gamarnik, A.V.1    Andino, R.2
  • 7
    • 77954668466 scopus 로고    scopus 로고
    • An RNA element at the 5′-end of the poliovirus genome functions as a general promoter for RNA synthesis
    • Vogt DA, Andino R, (2010) An RNA element at the 5′-end of the poliovirus genome functions as a general promoter for RNA synthesis. Plos Pathogens 6: e1000936.
    • (2010) Plos Pathogens , vol.6
    • Vogt, D.A.1    Andino, R.2
  • 8
    • 0027170180 scopus 로고
    • Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′-end of viral RNA
    • Andino R, Rieckhof GE, Achacoso PL, Baltimore D, (1993) Poliovirus RNA synthesis utilizes an RNP complex formed around the 5′-end of viral RNA. EMBO J 12: 3587-3598.
    • (1993) EMBO J , vol.12 , pp. 3587-3598
    • Andino, R.1    Rieckhof, G.E.2    Achacoso, P.L.3    Baltimore, D.4
  • 9
    • 0037383425 scopus 로고    scopus 로고
    • Poliovirus CRE-dependent VPg uridylylation is required for positive-strand RNA synthesis but not for negative-strand RNA synthesis
    • Murray KE, Barton DJ, (2003) Poliovirus CRE-dependent VPg uridylylation is required for positive-strand RNA synthesis but not for negative-strand RNA synthesis. J Virol 77: 4739-4750.
    • (2003) J Virol , vol.77 , pp. 4739-4750
    • Murray, K.E.1    Barton, D.J.2
  • 10
    • 71849107774 scopus 로고    scopus 로고
    • Cis-acting RNA elements in human and animal plus-strand RNA viruses
    • Liu Y, Wimmer E, Paul AV, (2009) Cis-acting RNA elements in human and animal plus-strand RNA viruses. Biochim Biophys Acta 1789: 495-517.
    • (2009) Biochim Biophys Acta , vol.1789 , pp. 495-517
    • Liu, Y.1    Wimmer, E.2    Paul, A.V.3
  • 11
    • 33749069918 scopus 로고    scopus 로고
    • The 3′ end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5′ end region
    • Serrano P, Pulido MR, Sáiz M, Martínez-Salas E, (2006) The 3′ end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5′ end region. J Gen Virol 87: 3013-3022.
    • (2006) J Gen Virol , vol.87 , pp. 3013-3022
    • Serrano, P.1    Pulido, M.R.2    Sáiz, M.3    Martínez-Salas, E.4
  • 12
    • 0029816833 scopus 로고    scopus 로고
    • Tandem mengovirus 5′ pseudoknots are linked to viral RNA synthesis, not poly(C)-mediated virulence
    • Martin LR, Palmenberg AC, (1996) Tandem mengovirus 5′ pseudoknots are linked to viral RNA synthesis, not poly(C)-mediated virulence. J Virol 70: 8182-8186.
    • (1996) J Virol , vol.70 , pp. 8182-8186
    • Martin, L.R.1    Palmenberg, A.C.2
  • 13
    • 0036893436 scopus 로고    scopus 로고
    • Terminal RNA replication elements in human parechovirus 1
    • Nateri AS, Hughes PJ, Stanway G, (2002) Terminal RNA replication elements in human parechovirus 1. J Virol 76: 13116-13122.
    • (2002) J Virol , vol.76 , pp. 13116-13122
    • Nateri, A.S.1    Hughes, P.J.2    Stanway, G.3
  • 14
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 15
    • 33748175067 scopus 로고    scopus 로고
    • A GCUA tetranucleotide loop found in the poliovirus oriL by in vivo SELEX (un)expectedly forms a YNMG-like structure: Extending the YNMG family with GYYA
    • Melchers WJG, Zoll J, Tessari M, Bakhmutov DV, Gmyl AP, et al. (2006) A GCUA tetranucleotide loop found in the poliovirus oriL by in vivo SELEX (un)expectedly forms a YNMG-like structure: Extending the YNMG family with GYYA. RNA 12: 1671-1682.
    • (2006) RNA , vol.12 , pp. 1671-1682
    • Melchers, W.J.G.1    Zoll, J.2    Tessari, M.3    Bakhmutov, D.V.4    Gmyl, A.P.5
  • 16
    • 0041665125 scopus 로고    scopus 로고
    • Structure of the pyrimidine-rich internal loop in the poliovirus 3′-UTR: The importance of maintaining pseudo-2-fold symmetry in RNA helices containing two adjacent non-canonical base-pairs
    • Lescrinier EMHP, Tessari M, van Kuppeveld FJM, Melchers WJG, Hilbers CW, et al. (2003) Structure of the pyrimidine-rich internal loop in the poliovirus 3′-UTR: The importance of maintaining pseudo-2-fold symmetry in RNA helices containing two adjacent non-canonical base-pairs. J Mol Biol 331: 759-769.
    • (2003) J Mol Biol , vol.331 , pp. 759-769
    • Lescrinier, E.M.H.P.1    Tessari, M.2    van Kuppeveld, F.J.M.3    Melchers, W.J.G.4    Hilbers, C.W.5
  • 17
    • 34247359126 scopus 로고    scopus 로고
    • Breaking pseudo-twofold symmetry in the poliovirus 3′-UTR Y-stem by restoring Watson-Crick base pairs
    • Zoll J, Tessari M, van Kuppeveld FJM, Melchers WJG, Heus HA, (2007) Breaking pseudo-twofold symmetry in the poliovirus 3′-UTR Y-stem by restoring Watson-Crick base pairs. RNA 13: 781-792.
    • (2007) RNA , vol.13 , pp. 781-792
    • Zoll, J.1    Tessari, M.2    van Kuppeveld, F.J.M.3    Melchers, W.J.G.4    Heus, H.A.5
  • 18
    • 0024507859 scopus 로고
    • Cloning and synthesis of infectious cardiovirus RNAs containing short, discrete poly(C) tracts
    • Duke GM, Palmenberg AC, (1989) Cloning and synthesis of infectious cardiovirus RNAs containing short, discrete poly(C) tracts. J Virol 63: 1822-1826.
    • (1989) J Virol , vol.63 , pp. 1822-1826
    • Duke, G.M.1    Palmenberg, A.C.2
  • 19
    • 23844520885 scopus 로고    scopus 로고
    • Dipyridamole reversibly inhibits mengovirus RNA replication
    • Fata-Hartley CL, Palmenberg AC, (2005) Dipyridamole reversibly inhibits mengovirus RNA replication. J Virol 79: 11062-11070.
    • (2005) J Virol , vol.79 , pp. 11062-11070
    • Fata-Hartley, C.L.1    Palmenberg, A.C.2
  • 20
    • 4644231043 scopus 로고    scopus 로고
    • Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses
    • Du Z, Yu J, Ulyanov NB, Andino R, James TL, (2004) Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses. Biochemistry 43: 11959-72.
    • (2004) Biochemistry , vol.43 , pp. 11959-11972
    • Du, Z.1    Yu, J.2    Ulyanov, N.B.3    Andino, R.4    James, T.L.5
  • 21
    • 0033673387 scopus 로고    scopus 로고
    • Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function
    • Lukavsky PJ, Otto GA, Lancaster AM, Sarnow P, Puglisi JD, (2000) Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat Struc Biol 7: 1105-1110.
    • (2000) Nat Struc Biol , vol.7 , pp. 1105-1110
    • Lukavsky, P.J.1    Otto, G.A.2    Lancaster, A.M.3    Sarnow, P.4    Puglisi, J.D.5
  • 22
    • 67650542563 scopus 로고    scopus 로고
    • Contribution of the closing base pair to exceptional stability in RNA tetraloop: Roles for molecular mimicry and electrostatic factors
    • Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC, (2009) Contribution of the closing base pair to exceptional stability in RNA tetraloop: Roles for molecular mimicry and electrostatic factors. J Am Chem 131: 8474-8484.
    • (2009) J Am Chem , vol.131 , pp. 8474-8484
    • Blose, J.M.1    Proctor, D.J.2    Veeraraghavan, N.3    Misra, V.K.4    Bevilacqua, P.C.5
  • 23
    • 0030561592 scopus 로고    scopus 로고
    • Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence
    • Paner TM, Riccelli PV, Owczarzy R, Benight AS, (1996) Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence. Biopolymers 39: 779-793.
    • (1996) Biopolymers , vol.39 , pp. 779-793
    • Paner, T.M.1    Riccelli, P.V.2    Owczarzy, R.3    Benight, A.S.4
  • 24
    • 32244434006 scopus 로고    scopus 로고
    • Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops
    • Vecenie CJ, Morrow CV, Zyra A, Serra MJ, (2006) Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops. Biochemistry 45: 1400-1407.
    • (2006) Biochemistry , vol.45 , pp. 1400-1407
    • Vecenie, C.J.1    Morrow, C.V.2    Zyra, A.3    Serra, M.J.4
  • 25
    • 0035827141 scopus 로고    scopus 로고
    • Recognition of pre-formed and flexible elements of an RNA stem-loop by nucleolin
    • Bouvet P, Allain FH, Finger LD, Dieckmann T, Feigon J, (2001) Recognition of pre-formed and flexible elements of an RNA stem-loop by nucleolin. J Mol Biol 309: 763-775.
    • (2001) J Mol Biol , vol.309 , pp. 763-775
    • Bouvet, P.1    Allain, F.H.2    Finger, L.D.3    Dieckmann, T.4    Feigon, J.5
  • 26
    • 12844281639 scopus 로고    scopus 로고
    • NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor
    • Maris C, Masse J, Chester A, Navaratnam N, Allain FH, (2005) NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor. RNA 11: 173-186.
    • (2005) RNA , vol.11 , pp. 173-186
    • Maris, C.1    Masse, J.2    Chester, A.3    Navaratnam, N.4    Allain, F.H.5
  • 27
    • 0037439087 scopus 로고    scopus 로고
    • Structure of 23S rRNA hairpin 35 and its interaction with the tylosin-resistance methyltransferase RlmA
    • Lebars I, Yoshizawa S, Stenholm AR, Guittet E, Douthwaite S, Fourmy D, (2003) Structure of 23S rRNA hairpin 35 and its interaction with the tylosin-resistance methyltransferase RlmA. EMBO J 22: 183-192.
    • (2003) EMBO J , vol.22 , pp. 183-192
    • Lebars, I.1    Yoshizawa, S.2    Stenholm, A.R.3    Guittet, E.4    Douthwaite, S.5    Fourmy, D.6
  • 28
    • 0033942925 scopus 로고    scopus 로고
    • Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR
    • Melchers WJG, Bakkers JMJE, Bruins Slot HJ, Galama JMD, Agol VI, et al. (2000) Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR. RNA 6: 976-987.
    • (2000) RNA , vol.6 , pp. 976-987
    • Melchers, W.J.G.1    Bakkers, J.M.J.E.2    Bruins Slot, H.J.3    Galama, J.M.D.4    Agol, V.I.5
  • 30
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without baseline distortion, using new strong-pulse sequences
    • Plateau P, Guéron M, (1982) Exchangeable proton NMR without baseline distortion, using new strong-pulse sequences. J Am Chem Soc 104: 7310-7311.
    • (1982) J Am Chem Soc , vol.104 , pp. 7310-7311
    • Plateau, P.1    Guéron, M.2
  • 31
    • 0029900311 scopus 로고    scopus 로고
    • Mengovirus leader is involved in the inhibition of host cell protein synthesis
    • Zoll J, Galama JMD, van Kuppeveld FJM, Melchers WJG, (1996) Mengovirus leader is involved in the inhibition of host cell protein synthesis. J Virol 70: 4948-4952.
    • (1996) J Virol , vol.70 , pp. 4948-4952
    • Zoll, J.1    Galama, J.M.D.2    van Kuppeveld, F.J.M.3    Melchers, W.J.G.4
  • 32
    • 0036776338 scopus 로고    scopus 로고
    • Biological significance of a human enterovirus B-specific RNA element in the 3′nontranslated region
    • Merkle I, van Ooij MJM, van Kuppeveld FJM, Glaudemans DHRF, Galama JMD, et al. (2002) Biological significance of a human enterovirus B-specific RNA element in the 3′nontranslated region. J Virol 76: 9900-9909.
    • (2002) J Virol , vol.76 , pp. 9900-9909
    • Merkle, I.1    van Ooij, M.J.M.2    van Kuppeveld, F.J.M.3    Glaudemans, D.H.R.F.4    Galama, J.M.D.5
  • 33
    • 0028871749 scopus 로고
    • Genetic analysis of a hydrophobic domain of coxsackievirus B3 protein 2B: a moderate degree of hydrophobicity is required for a cis-acting function in viral RNA synthesis
    • Van Kuppeveld FJM, Galama JMD, Zoll J, Melchers WJG, (1995) Genetic analysis of a hydrophobic domain of coxsackievirus B3 protein 2B: a moderate degree of hydrophobicity is required for a cis-acting function in viral RNA synthesis. J Virol 69: 7782-7790.
    • (1995) J Virol , vol.69 , pp. 7782-7790
    • van Kuppeveld, F.J.M.1    Galama, J.M.D.2    Zoll, J.3    Melchers, W.J.G.4
  • 34
    • 33745174889 scopus 로고    scopus 로고
    • Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element
    • Van Ooij MJM, Polacek C, Glaudemans DHRF, Kuijpers J, van Kuppeveld FJM, et al. (2006) Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element. Nucleic Acids Res 34: 2953-2965.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2953-2965
    • van Ooij, M.J.M.1    Polacek, C.2    Glaudemans, D.H.R.F.3    Kuijpers, J.4    van Kuppeveld, F.J.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.