Recognition of pre-formed and flexible elements of an RNA stem-loop by nucleolin

Journal of Molecular Biology

Volumn 309, Issue 3, 2001, Pages 763-775

  Bouvet, Philippe ^a,b   Allain, Frédéric H T ^a,b   Finger, L David ^a,b   Dieckmann, Thorsten ^a,b   Feigon, Juli ^a,b  

^a Institut Pharmacologie et Biologie Structurale   (France)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Loop E; NMR; RBD; RNP; RRM

Indexed keywords

NUCLEOLIN; RNA; RNA BINDING PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BIOGENESIS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN INTERACTION; RIBOSOME; RNA STRUCTURE;

EID: 0035827141     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4691     Document Type: Article

References (59)

1. Structure and functions of nucleolin
2. The role of proteins in nucleolar structure and function
3. Interrelations between the maturation of a 100 kDa nucleolar protein and pre rRNA synthesis in CHO cells
4. Effect of anti C23 (nucleolin) antibody on transcription of ribosomal DNA in Chironomus salivary gland cells
5. Correlation between rDNA transcription and distribution of a 100 kD nucleolar protein in CHO cells
6. Nucleolin functions in the first step of ribosomal RNA processing
7. Inhibition of nucleolar protein nucleolin by electroporation with anti-nucleolin antibodies results in an increase of the nucleolar size
8. Major nucleolar proteins shuttle between nucleus and cytoplasm
9. Maturation of a 100 kDa protein associated with preribosomes in Chinese hamster ovary cells
10. Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors
11. Concerted activities of the RNA recognition and the glycine-rich C-terminal domains of nucleolin are required for efficient complex formation with preribosomal RNA
12. Nucleolin is a sequence specific RNA-binding protein characterization of targets on pre-ribosomal RNA
13. Association of protein C23 with rapidly labeled nucleolar RNA
14. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
15. In vitro selection of RNA molecules that bind specific ligands
16. Localization of nucleolin binding sites on human and mouse pre-ribosomal RNA
17. Conserved structures and diversity of functions of RNA-binding proteins
18. Two RNA-binding domains determine the RNA-binding specificity of nucleolin
19. RNA recognition by the joint action of two nucleolin RNA-binding domains: Genetic analysis and structural modeling
20. Interaction of the sex-lethal RNA binding domains with RNA
21. Structural basis for recognition of the tra mRNA precursor by the sex-lethal protein
22. Recognition of polyadenylate RNA by the poly(A)-binding protein
23. RNA binding specificity of hnRNP A1 - Significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing
24. Both RNA-binding domains in heterogenous nuclear ribonucleoprotein A1 contribute toward single-stranded-RNA binding
25. Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA
26. Induced fit in RNA-protein recognition
27. Solution structure of the two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target
28. Molecular basis of sequence specific recognition of pre-ribosomal RNA by nucleolin
29. The structure of the L3 loop from the hepatitis delta virus ribozyme: A syn cytidine
30. NMR structure of stem-loop SL2 of the HIV-1 Psi RNA packaging signal reveals a novel A-U-A base-triple platform
31. 13C relaxation and dynamics of the purine bases in the iron responsive element RNA hairpin
32. Three-dimensional folding of an RNA hairpin required for packaging HIV-1
33. A common motif organizes the structure of multi-helix loops in 16 s and 23 s ribosomal RNAs
34. The conformation of loop E of eukaryotic 5 S ribosomal RNA
35. The sarcin/ricin loop, a modular RNA
36. Crystal structure of the ribosomal RNA domain essential for binding elongation factors
37. Solution structure of the loop B domain from the hairpin ribozyme
38. The transition from a neutral-pH double helix to a low-pH triple helix induces a conformational switch in the CCCG tetraloop closing a Watson-Crick stem
39. The conformation of the sarcin/ricin loop from 28 S ribosomal RNA
40. Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23 S RNA
41. RNA-protein interactions of stored 5S RNA with TFIIIA and ribosomal protein L5 during Xenopus oogenesis
42. Nuclear Overhauser experiments at 500 MHz on the down-field proton spectra of 5 S ribonucleic acid and its complex with ribosomal protein L25
43. Structure of the 30 S ribosomal subunit
44. The NMR structure of the 5 S rRNA E-domain-protein L25 complex shows preformed and induced recognition
45. Metals, motifs, and recognition in the crystal structure of a 5 S rRNA domain
46. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
47. Crystal structure of the spliceosomal U2B″-U2A′ protein complex bound to a fragment of U2 small nuclear RNA
48. Specificity of ribonucleoprotein interaction determined by RNA folding during complex formulation
49. NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the ψ-RNA packaging signal. Implications for genome recognition
50. Structure of the HIV-1 nucleocapsid protein bound to the SL3 Psi-RNA recognition element
51. Structure of the polyadenylation regulatory element of the human U1A pre-mRNA 3′-untranslated region and interaction with the U1A protein
52. Dynamical behavior of the HIV-1 nucleocapsid protein
53. The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein
54. Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: Significance for viral replication
55. RNA chaperones and the RNA folding problem
56. NMR investigation of RNA structure
57. Assignment methodology for larger oligonucleotides: Application to an ATP-binding RNA aptamer
58. The use of NMR methods for conformational studies of nucleic acids
59. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules