Find the weakest link. A comparison between demographic, genetic and demo-genetic metapopulation extinction times

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Robert, Alexandre ^a  

^a SORBONNE UNIVERSITÉ   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DEMOGRAPHY; EXTINCTION; GENETIC ANALYSIS; GENETIC DRIFT; GENETIC VARIATION; HABITAT QUALITY; INBREEDING; METAPOPULATION;

ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; COMPUTER SIMULATION; DEMOGRAPHY; ECOSYSTEM; POPULATION DYNAMICS; POPULATION GENETICS; SPECIES EXTINCTION; TIME;

COMPUTER SIMULATION; DEMOGRAPHY; ECOSYSTEM; EXTINCTION, BIOLOGICAL; GENETICS, POPULATION; MODELS, BIOLOGICAL; MODELS, GENETIC; POPULATION DYNAMICS; TIME FACTORS;

EID: 80052834758     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-260     Document Type: Article

References (59)

1. Directions in conservation biology. Caughley G, J Anim Ecol 1994 63 215 244 10.2307/5542
2. Ecological and genetic factors in conservation: a cautionary tale. Caro TM, Laurenson MK, Science 1994 263 485 6 10.1126/science.8290956 8290956
3. Purging inbreeding depression and the probability of extinction: full-sib mating. Hedrick PW, Heredity 1994 73 363 372 10.1038/hdy.1994.183 7989216 (Pubitemid 2141295)
4. Mutation accumulation in finite outbreeding and inbreeding populations. Charlesworth D, Morgan MT, Charlesworth B, Genet Res 1993 61 39 56 10.1017/S0016672300031086 (Pubitemid 23215490)
5. How large must populations be to retain evolutionary potential? Franklin IR, Frankham R, Anim Conserv 1998 1 69 73 10.1111/j.1469-1795.1998.tb00228.x
6. Inbreeding depression in the wild. Crnokrak P, Roff DA, Heredity 1999 83 260 270 10.1038/sj.hdy.6885530 10504423 (Pubitemid 29498795)
7. Effect of deleterious mutation-accumulation on the fitness of RNA bacteriophage MS2. de la Pẽa M, Elena SF, Moya A, Evolution 2000 54 686 691 10937243 (Pubitemid 30263941)
8. Do population size bottlenecks reduce evolutionary potential? Frankham R, Lees K, Montgomery ME, England PR, Lowe EH, et al. Anim Conserv 1999 2 255 260 10.1111/j.1469-1795.1999.tb00071.x (Pubitemid 129507136)
9. Inbreeding and extinction in a butterfly metapopulation. Saccheri I, Kuussaari M, Kankare M, Wikman P, Fortelius W, et al. Nature 1998 392 491 494 10.1038/33136 (Pubitemid 28168980)
10. Trapped in the extinction vortex? Strong genetic effects in a declining vertebrate population. Blomqvist D, Pauliny A, Larsson M, Flodin L, BMC Evol Biol 2010 10 33 10.1186/1471-2148-10-33 20122269
11. Most species are not driven to extinction before genetic factors impact them. Spielman D, Brook BW, Frankham R, Proc Natl Acad Sci USA 2004 101 15261 15264 10.1073/pnas.0403809101 15477597 (Pubitemid 39391752)
12. Minimum viable population size: a meta-analysis of 30 years of published estimates. Traill LW, Bradshaw JA, Brook BW, Biol Conserv 2007 139 159 166 10.1016/j.biocon.2007.06.011 (Pubitemid 47320616)
13. The critical effective size for a genetically secure population. Lynch M, Lande R, Anim Conserv 1998 1 70 72 10.1111/j.1469-1795.1998.tb00229.x (Pubitemid 128436882)
14. Selection, load, and inbreeding depression in a large metapopulation. Whitlock MC, Genetics 2002 160 1191 1202 11901133 (Pubitemid 34263479)
15. Mutation load and the survival of small populations. Lynch M, Gabriel W, Evolution 1990 44 1725 1737 10.2307/2409502
16. Mutational meltdowns in sexual populations. Lynch M, Conery J, Bürger R, Evolution 1995 49 1067 1080 10.2307/2410432 (Pubitemid 3024849)
17. Metapopulation extinction caused by mutation accumulation. Higgins K, Lynch M, Proc Natl Acad Sci USA 2001 98 2928 2933 10.1073/pnas.031358898 11226343 (Pubitemid 32209586)
18. Metapopulation persistence in fragmented landscapes: significant interactions between genetic and demographic processes. Theodorou K, Souan H, Couvet D, J Evol Biol 2009 22 152 162 10.1111/j.1420-9101.2008.01634.x 19120816
19. Predicting the deleterious effects of mutation load in fragmented populations. Jaquiéry J, Guillaume F, Perrin N, Conserv Biol 2009 23 207 218 10.1111/j.1523-1739.2008.01052.x 18847439
20. ST a good predictor of extinction? Robert A, Am Nat 2011 177 99 109 10.1086/657434 21090993
21. Quantification of extinction risk: IUCN's system for classifying threatened species. Mace GM, Collar NJ, Gaston KJ, Hilton-Taylor C, Akcakaya HR, et al. Conserv Biol 2008 22 1424 1442 10.1111/j.1523-1739.2008.01044.x 18847444
22. Minimum viable population: coping with uncertainty. Shaffer M, Viable population for conservation Cambridge: Cambridge University Press, Soulé ME, 1987 69 86
23. Minimum viable population size for lake sturgeon (Acipenser fulvescens) using an individual-based model of demographics and genetics. Schueller AM, Hayes DB, Can J Fisher Aquat Sci 2011 68 62 73 10.1139/F10-129
24. On metapopulation resistance to drift and extinction. Lehmann L, Perrin N, Ecology 2006 87 1844 1855 10.1890/0012-9658(2006)87[1844:OMRTDA]2.0.CO;2 16922332 (Pubitemid 44141560)
25. A range-wide model of landscape connectivity and conservation for the jaguar, Panthera onca. Rabinowitz A, Zeller KA, Biol Conserv 2010 143 939 945 10.1016/j.biocon.2010.01.002
26. Captive breeding and the genetic fitness of natural populations. Lynch M, O'Hely M, Conserv Genet 2001 2 363 378 10.1023/A:1012550620717 (Pubitemid 33635447)
27. Integration of demography and genetics in population restorations. Robert A, Couvet D, Sarrazin F, Ecoscience 2007 14 463 471 10.2980/1195-6860(2007) 14[463:IODAGI]2.0.CO;2 (Pubitemid 351166691)
28. Modelling the dynamics of introduced populations in the narrow-endemic Centaurea corymbosa: a demo-genetic integration. Kirchner F, Robert A, Colas B, J Appl Ecol 2006 43 1011 1021 10.1111/j.1365-2664.2006.01179.x (Pubitemid 44268102)
29. Lande R, Engen S, Saether BE, Stochastic Population Dynamics in Ecology and Conservation Oxford University Press 2003
30. Genetic load in subdivided populations: interactions between the migration rate, the size and the number of subpopulations. Theodorou K, Couvet D, Heredity 2006 96 69 78 16304604
31. Population dynamic consequences of dispersal in local populations and in metapopulations. Hanski I, Dispersal Oxford: Oxford University Press, Clobert J, Danchin E, Dhondt A, Nichols JD, 2001 283 298
32. Bottlenecks in large populations: the effect of immigration on population viability. Robert A, Couvet D, Sarrazin F, Evol Ecol 2003 17 213 231 10.1023/A:1025563107092 (Pubitemid 37181757)
33. Risks of population extinction from demographic and environmental stochasticity and random catastrophes. Lande R, Am Nat 1993 142 911 927 10.1086/285580
34. Deleterious effects of rectricted gene flow in fragmented populations. Couvet D, Conserv Biol 2002 16 369 376 10.1046/j.1523-1739.2002.99518.x (Pubitemid 34315812)
35. Increased heritable variation following population bottlenecks - the role of dominance. Willis JH, Orr HA, Evolution 1993 47 949 957 10.2307/2410199
36. Negative environmental perturbations may improve species persistence. Robert A, Proc Roy Soc Lond B 2006 273 2501 2506 10.1098/rspb.2006.3601 (Pubitemid 44439671)
37. Inbreeding-environment interactions increase extinction risk. Liao W, Reed DH, Anim Conserv 2009 12 54 61 10.1111/j.1469-1795.2008.00220.x
38. Realistic levels of inbreeding depression strongly affect extinction risk in wild populations. O'Grady JJ, Brook BW, Reed DH, Ballou JD, Tonkyn DW, Frankham R, Biol Conserv 2006 133 42 51 10.1016/j.biocon.2006.05.016 (Pubitemid 44373870)
39. Contribution of inbreeding to extinction risk in threatened species. Brook BW, Tonkyn DW, O'Grady JJ, Frankham R, Conserv Ecol 2002 6 16 http://www.ecologyandsociety.org/vol6/iss1/art16/main.html
40. Is mutation accumulation a threat to the survival of endangered species? Gilligan DM, Woodworth LM, Montgomery ME, Briscoe DA, Frankham R, Conserv Biol 1997 11 1235 1241 10.1046/j.1523-1739.1997.96215.x (Pubitemid 28084317)
41. Long-term persistence of species and the SLOSS problem. Ovaskainen O, J Theor Biol 2002 218 419 433 12384046 (Pubitemid 35286343)
42. Theory for designing nature reserves for single species. McCarthy MA, Thompson CJ, Possingham HP, Am Nat 2005 165 250 257 10.1086/427297 15729654 (Pubitemid 40263664)
43. Spatial aspects of metapopulation survival: from model results to rules of thumb from landscape management. Frank K, Wissel C, Land Ecol 1998 13 363 379 10.1023/A:1008054906030 (Pubitemid 28501633)
44. Metapopulation extinction risk: Dispersal's duplicity. Higgins K, Theor Pop Biol 2009 76 146 155 10.1016/j.tpb.2009.05.006
45. Ecological risk analysis for single and multiple populations. Akçakaya HR, Ginzburg LR, Species conservation: a population-biological approach, Seitz A, Loeschke V. Birkhaüser, 1991 73 87
46. The effects of spatially correlated perturbations and habitat configuration on metapopulation persistence. Robert A, Oikos 2009 118 1590 1600 10.1111/j.1600-0706.2009.17818.x
47. The frequency and severity of catastrophic die-offs in vertebrates. Reed DH, O'Grady JJ, Ballou JD, Frankham R, Anim Conserv 2003 6 109 114 10.1017/S1367943003003147 (Pubitemid 40281177)
48. The biotic crisis and the future of evolution. Myers N, Knoll AH, Proc Natl Acad Sci USA 2001 98 5389 5392 10.1073/pnas.091092498 11344283 (Pubitemid 32435654)
49. Selection in captivity during supportive breeding may reduce fitness in the wild. Ford M, Conserv Biol 2002 16 815 825 10.1046/j.1523-1739.2002.00257.x (Pubitemid 34592936)
50. Mutations affecting fitness in Drosophila populations. Simmons MJ, Crow JF, An Rev Genet 1977 11 49 78 10.1146/annurev.ge.11.120177.000405
51. Rates of spontaneous mutations. Drake J, Charlesworth B, Charlesworth D, Crow JF, Genetics 1998 148 1667 1686 9560386
52. Dynamics of inbreeding depression due to deleterious mutations in small populations: Mutation parameters and inbreeding rate. Wang J, Hill WG, Charlesworth D, Charlesworth B, Genet Res 1999 74 165 178 10.1017/ S0016672399003900 10584559 (Pubitemid 29507355)
53. Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Haag-Liautard C, Dorris M, Maside X, Macaskill S, Halligan DL, et al. Nature 2007 445 82 85 10.1038/nature05388 17203060 (Pubitemid 46067305)
54. Perspective: spontaneous deleterious mutation. Lynch M, Blanchard J, Houle D, Kibota T, Schultz S, Vassilieva L, Willis J, Evolution 1999 53 645 663 10.2307/2640707 (Pubitemid 29332400)
55. Genetics of populations. Hedrick P, Sudbury: Jones and Bartlett Publishers 3 2005
56. Analysis of Survival Data. Cox D, Oakes D, London: Chapman & Hall 1984
57. Crawley MJ, The R Book Chichester: John Wiley & Sons Ltd 2007
58. R: A Language and Environment for Statistical Computing.V. 2.7.2. R Development Core Team, http://www.R-project.org
59. Regression and model-building in conservation biology, biogeography and ecology: The distinction between-and reconciliation of-'predictive' and 'explanatory' models. Mac Nally R, Biodiv Conserv 2000 9 655 671 10.1023/A:1008985925162 (Pubitemid 30397774)