The "protein dynamical transition" does not require the protein polypeptide chain

Journal of Physical Chemistry Letters

Volumn 2, Issue 18, 2011, Pages 2275-2279

  Schirò, Giorgio ^a   Caronna, Chiara ^b   Natali, Francesca ^c   Koza, M Marek ^c   Cupane, Antonio ^a  

^a UNIVERSITY OF PALERMO   (Italy)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c INSTITUT LAUE LANGEVIN   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE PROTEINS; BOSON PEAKS; CHEMICAL COMPOSITIONS; DYNAMICAL TRANSITION; EXPERIMENTAL EVIDENCE; HYDROGEN ATOMS; LOW-FREQUENCY VIBRATIONAL MODES; POLYPEPTIDE CHAIN; PROTEIN BEHAVIOR; PROTEIN DYNAMICS; PROTEIN POWDERS; SIDE-CHAINS; SUFFICIENT CONDITIONS;

AMINO ACIDS; CONFORMATIONS; DYNAMICS; HYDRATION; HYDROGEN; MIXTURES; POWDERS;

PROTEINS;

EID: 80052822802     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz200797g     Document Type: Article

References (36)

1. Deriu, A.; Natali, F. Recent Neutron Investigations on Biomolecular Dynamics: From Model Systems Towards Complex Macromolecular Machines J. Neutron Res. 2002, 10, 115-122
2. Doster, W.; Cusack, S.; Petry, W. Dynamical Transition of Myoglobin Revealed by Inelastic Neutron Scattering Nature 1989, 337, 754-756
3. Parak, F.; Knapp, E. W.; Kucheida, D. Protein Dynamics. Mossbauer Spectroscopy on Deoxymyoglobin Crystals J. Mol. Biol. 1982, 161, 177-194 (Pubitemid 13212846)
4. Melchers, B.; Knapp, E. W.; Parak, F.; Cordone, L.; Cupane, A.; Leone, M. Structural Fluctuations of Myoglobin From Normal-Modes, Mössbauer, Raman, and Absorption Spectroscopy Biophys. J. 1996, 70, 2092-2099
5. Kuczera, K.; Kuriyan, J.; Karplus, M. Temperature Dependence of the Structure and Dynamics of Myoglobin: A Simulation Approach J. Mol. Biol. 1990, 213, 351-373 (Pubitemid 20176545)
6. Tarek, M.; Tobias, D. J. Role of Protein-Water Hydrogen Bond Dynamics in the Protein Dynamical Transition Phys. Rev. Lett. 2002, 88, 138101
7. Roh, J. H.; Novikov, V. N.; Gregory, R. B.; Curtis, J. E.; Chowdhuri, Z.; Sokolov, A. P. Onsets of Anharmonicity in Protein Dynamics Phys. Rev. Lett. 2005, 95, 038101
8. Schiro, G.; Caronna, C.; Natali, F.; Cupane, A. Direct Evidence of the Amino Acid Side Chain and Backbone Contributions to Protein Anharmonicity J. Am. Chem. Soc. 2010, 132, 1371-1376
9. Wood, K.; Tobias, D. J.; Kessler, B.; Gabel, F.; Oesterhelt, D.; Mulder, F. A. A.; Zaccai, G.; Weik, M. The Low-Temperature Inflection Observed in Neutron Scattering Measurements of Proteins Is Due to Methyl Rotation: Direct Evidence Using Isotope Labeling and Molecular Dynamics Simulations J. Am. Chem. Soc. 2010, 132, 4990-4991
10. Cordone, L.; Ferrand, M.; Vitrano, E.; Zaccai, G. Harmonic Behaviour of Trehalose Coated Carbon-monoxy-myoglobin at High Temperature Biophys. J. 1999, 76, 1043-1047 (Pubitemid 29264585)
11. Schiro, G.; Sclafani, M.; Caronna, C.; Natali, F.; Plazanet, M.; Cupane, A. Molecular Origin and Hydration Dependence of Protein Anharmonicity: An Elastic Neutron Scattering Study Chem. Phys. 2008, 345, 259-266
12. Schiro, G.; Sclafani, M.; Natali, F.; Cupane, A. Hydration Dependent Dynamics in Sol-Gel Encapsulated Myoglobin Eur. Biophys. J. 2008, 37, 543-549
13. Chen, G.; Fenimore, P. W.; Frauenfelder, H.; Mezei, F.; Swenson, J.; Young, R. D. Protein Fluctuations Explored by Inelastic Neutron Scattering and Dielectric Relaxation Spectroscopy Philos. Mag. 2008, 88, 1478-6443
14. Doster, W. The Protein-Solvent Glass Transition Biochim. Biophys. Acta 2010, 1804, 3-14 and references therein
15. Rasmussen, B. F.; Stock, A. M.; Ringe, D.; Petsko, G. A. Crystalline Ribonuclease-A Loses Function Below the Dynamic Transition at 220-K Nature 1992, 357, 423-424
16. Daniel, R. M.; Smith, J.; Ferrand, M.; Hery, S.; Dunn, R.; Finney, J. L. Enzyme Activity Below the Dynamical Transition at 220 K Biophys. J. 1998, 75, 2504-2507 (Pubitemid 28492133)
17. Lopez, M.; Kurkal-Siebert, V.; Dunn, R. V.; Tehei, M.; Finney, J. L.; Smith, J. C.; Daniel, R. M. Activity and Dynamics of an Enzyme, Pig Liver Esterase, in Near-Anhydrous Conditions Biophys. J. 2010, 99, L62-L64
18. Mamontov, E.; O'Neill, H.; Zhang, Q. Mean-Squared Atomic Displacements in Hydrated Lysozyme, Native and Denatured J. Biol. Phys. 2010, 36, 291-297
19. Russo, R.; Teixeira, J.; Ollivier, J. The Impact of Hydration Water on the Dynamics of Side Chains of Hydrophobic Peptides: From Dry Powder to Highly Concentrated Solutions J. Chem. Phys. 2009, 130, 235101
20. He, Y.; Ku, P. I.; Knab, J. R.; Chen, J. Y.; Markelz, A. G. Protein Dynamical Transition Does Not Require Protein Structure Phys. Rev. Lett. 2008, 101, 178103
21. Backus, E. H. G.; Bloem, R.; Pfister, R.; Moretto, A.; Crisma, M.; Toniolo, C.; Hamm, P. Dynamical Transition in a Small Helical Peptide and Its Implication for Vibrational Energy Transport J. Phys. Chem. B 2009, 113, 13405-13409
22. Cornicchi, E.; Capponi, S.; Marconi, M.; Onori, G.; Paciaroni, A. Temperature Dependence of Fast Fluctuations in Single- and Double-Stranded DNA Molecules: A Neutron Scattering Investigation Philos. Mag. 2007, 87, 509-515 (Pubitemid 46277710)
23. Roh, J. H.; Briber, R. M.; Damjanovic, A.; Thirumalai, D.; Woodson, S. A.; Sokolov, A. P. Dynamics of tRNA at Different Levels of Hydration Biophys. J. 2009, 96, 2755-2762
24. Gaspar, A. M.; Busch, S.; Appavou, M. S.; Haeussler, W.; Georgii, R.; Su, Y.; Doster, W. Using Polarization Analysis to Separate the Coherent and Incoherent Scattering from Protein Samples Biochim. Biophys. Acta 2010, 1804, 76-82
25. Byler, D. M.; Susi, H. Examination of the Secondary Structure of Proteins by Deconvolved FTIR Spectra Biopolymers 1986, 25, 469-487
26. Gore, R. C.; Bowling Barnes, R.; Petersen, E. Infrared Absorption of Aqueous Solutions of Organic Acids and Their Salts Anal. Chem. 1949, 21, 382-386
27. Koegel, R. J.; Greenstein, J. P.; Winitz, M.; Birnbaum, S. M.; McCallum, R. A. Studies on Diastereoisomeric ?-Amino Acids and Corresponding Hydroxy Acids. V. Infrared Spectra J. Am. Chem. Soc. 1955, 77, 5708-5720
28. Schiro, G.; Caronna, C.; Natali, F.; Cupane, A. Molecular Origin and Hydration Dependence of Protein Anharmonicity: An Elastic Neutron Scattering Study Phys. Chem. Chem. Phys. 2010, 12, 10215-10220
29. Fenimore, P. W.; Frauenfelder, H.; McMahon, B. H.; Young, R. D. Bulk-Solvent and Hydration-Shell Fluctuations, Similar to ?- and β-Fluctuations in Glasses, Control Protein Motions and Functions Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 14408-14413 (Pubitemid 39346762)
30. Cusack, S.; Doster, W. Temperature Dependence of the Low Frequency Dynamics of Myoglobin Biophys. J. 1990, 58, 243-251
31. Kurkal-Siebert, V.; Smith, J. Low-Temperature Protein Dynamics: A Simulation Analysis of Interprotein Vibrations and the Boson Peak at 150 K J. Am. Chem. Soc. 2006, 128, 2356-2364
32. Bizzarri, A. R.; Paciaroni, A.; Arcangeli, C.; Cannistraro, S. Low-Frequency Vibrational Modes in Proteins: A Neutron Scattering Investigation Eur. Biophys. J. 2001, 30, 443-449 (Pubitemid 32999221)
33. Tarek, M.; Tobias, D. J. Effects of Solvent Damping on Side Chain and Backbone Contributions to the Protein Boson Peak J. Chem. Phys. 2001, 115, 1607-1612 (Pubitemid 32699345)
34. De Francesco, A.; Marconi, M.; Cinelli, S.; Onori, G.; Paciaroni, A. Picosecond Internal Dynamics of Lysozyme as Affected by Thermal Unfolding in Nonaqueous Environment Biophys. J. 2004, 86, 480-487 (Pubitemid 38067477)
35. Diehl, M.; Doster, W.; Petry, W.; Schober, H. Water-Coupled Low-Frequency Modes of Myoglobin and Lysozyme Observed by Inelastic Neutron Scattering Biophys. J. 1997, 73, 2726-2732 (Pubitemid 27471481)
36. Leyser, H.; Doster, W.; Diehl, M. Far-Infrared Emission by Boson Peak Vibrations in a Globular Protein Phys. Rev. Lett. 1999, 82, 2987-2990 (Pubitemid 129689970)