SCOPUS 정보 검색 플랫폼

Journal of the American Chemical Society

Volumn 128, Issue 7, 2006, Pages 2356-2364

Low-temperature protein dynamics: A simulation analysis of interprotein vibrations and the Boson peak at 150 K

(2) Kurkal Siebert, Vandana a Smith, Jeremy C a

a UNIVERSITY OF HEIDELBERG (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTALLINE MATERIALS; GLASS TRANSITION; MOLECULAR DYNAMICS; MOLECULAR VIBRATIONS; PRINCIPAL COMPONENT ANALYSIS; THERMAL EFFECTS;

BOSON PEAKS; DYNAMIC STRUCTURE FACTORS; FUNCTIONAL PROTEIN ENERGY; PROTEIN-PROTEIN INTERACTIONS;

PROTEINS;

MYOGLOBIN; PROTEIN;

ARTICLE; BOSON; GLASS TRANSITION TEMPERATURE; LOW TEMPERATURE; MOLECULAR DYNAMICS; PRINCIPAL COMPONENT ANALYSIS; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; SIMULATION; VIBRATION;

COLD; COMPUTER SIMULATION; MYOGLOBIN; NEUTRONS; PRINCIPAL COMPONENT ANALYSIS; SCATTERING, RADIATION; THERMODYNAMICS;

EID: 33644555492 PISSN: 00027863 EISSN: None Source Type: Journal
DOI: 10.1021/ja055962q Document Type: Article

Times cited : (42)

References (64)

1
- 0026320866
- Frauenfelder, H.; Sligar, S. G.; Wolynes, P. G. Science 1991, 254, 1598-1603.
- (1991) Science , vol.254 , pp. 1598-1603
- Frauenfelder, H.¹ Sligar, S.G.² Wolynes, P.G.³

2
- 0023746244
- Frauenfelder, H.; Parak, F.; Young, R. D. Annu. Rev. Biophys. Biophys. Chem. 1988, 17, 451-479.
- (1988) Annu. Rev. Biophys. Biophys. Chem. , vol.17 , pp. 451-479
- Frauenfelder, H.¹ Parak, F.² Young, R.D.³

3
- 4043156208
- Balog, E.; Becker, T.; Oetl, M.; Lechner, R.; Daniel, R.; Finney, J.; Smith, J. C. Phys. Rev. Lett. 2004, 93, 028103.
- (2004) Phys. Rev. Lett. , vol.93 , pp. 028103
- Balog, E.¹ Becker, T.² Oetl, M.³ Lechner, R.⁴ Daniel, R.⁵ Finney, J.⁶ Smith, J.C.⁷

4
- 0022419152
- Levitt, M.; Sander, C.; Stern, P. S. J. Mol. Biol. 1985, 181, 423-447.
- (1985) J. Mol. Biol. , vol.181 , pp. 423-447
- Levitt, M.¹ Sander, C.² Stern, P.S.³

5
- 0029560322
- Marques, O.; Sanjouand, Y. H. Proteins 1995, 23, 557-560.
- (1995) Proteins , vol.23 , pp. 557-560
- Marques, O.¹ Sanjouand, Y.H.²

6
- 0025163070
- Seno, Y.; Go, N. J. Mol. Biol. 1990, 216, 111-126.
- (1990) J. Mol. Biol. , vol.216 , pp. 111-126
- Seno, Y.¹ Go, N.²

7
- 0037022358
- Groot, M. L.; Vos, M. H.; Schlichting, I.; van Mourik, F.; Joffre, M.; Lambry, J. C.; Martin, J. L. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 1323-1328.
- (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 1323-1328
- Groot, M.L.¹ Vos, M.H.² Schlichting, I.³ Van Mourik, F.⁴ Joffre, M.⁵ Lambry, J.C.⁶ Martin, J.L.⁷

8
- 0037061970
- Rosca, F.; Kumar, A. T. N.; Ionascu, D.; Ye, X.; Demidov, A. A.; Sjodin, T.; Wharton, D.; Barrick, D.; Saligar, S. G.; Tonetani, T.; Champion, P. M. J. Phys. Chem. A 2002, 106, 3540-3552.
- (2002) J. Phys. Chem. A , vol.106 , pp. 3540-3552
- Rosca, F.¹ Kumar, A.T.N.² Ionascu, D.³ Ye, X.⁴ Demidov, A.A.⁵ Sjodin, T.⁶ Wharton, D.⁷ Barrick, D.⁸ Saligar, S.G.⁹ Tonetani, T.¹⁰ Champion, P.M.¹¹

9
- 0025938315
- Smith, J. C. Q. Rev. Biophys. 1991, 24, 227-291.
- (1991) Q. Rev. Biophys. , vol.24 , pp. 227-291
- Smith, J.C.¹

10
- 36149045188
- McCammon, J. A. Rep. Prog. Phys. 1984, 47, 1-46.
- (1984) Rep. Prog. Phys. , vol.47 , pp. 1-46
- McCammon, J.A.¹

11
- 0032873476
- Paciaroni, A.; Stroppolo, M. E.; Arcangeli, C.; Bizzarri, A. R.; Desideri, A.; Cannistraro, S. Eur. Biophys. J. 1999, 28, 447-456.
- (1999) Eur. Biophys. J. , vol.28 , pp. 447-456
- Paciaroni, A.¹ Stroppolo, M.E.² Arcangeli, C.³ Bizzarri, A.R.⁴ Desideri, A.⁵ Cannistraro, S.⁶

12
- 0025333959
- Cusack, S.; Doster, W. Biophys. J. 1990, 58, 243-251.
- (1990) Biophys. J. , vol.58 , pp. 243-251
- Cusack, S.¹ Doster, W.²

13
- 0030862281
- Diehl, M.; Doster, W.; Schober, H. Biophys. J. 1997, 73, 2726-2732.
- (1997) Biophys. J. , vol.73 , pp. 2726-2732
- Diehl, M.¹ Doster, W.² Schober, H.³

14
- 0001706226
- Cusack, S.; Doster, W.; Petry, W. Phys. Rev. Lett. 1990, 65, 1080-1083.
- (1990) Phys. Rev. Lett. , vol.65 , pp. 1080-1083
- Cusack, S.¹ Doster, W.² Petry, W.³

15
- 0027491027
- Ferrand, M.; Dianoux, A. J.; Petry, W.; Zaccai, G. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 9668-9672.
- (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 9668-9672
- Ferrand, M.¹ Dianoux, A.J.² Petry, W.³ Zaccai, G.⁴

16
- 0033064923
- Fitter, J. Biophys. J. 1999, 76, 1034-1042.
- (1999) Biophys. J. , vol.76 , pp. 1034-1042
- Fitter, J.¹

17
- 0015353157
- Brown, K.; Erfurth, S.; Small, E. W.; Peticolas, W. L. Proc. Natl. Acad. Sci. U.S.A. 1972, 69, 1467-1469.
- (1972) Proc. Natl. Acad. Sci. U.S.A. , vol.69 , pp. 1467-1469
- Brown, K.¹ Erfurth, S.² Small, E.W.³ Peticolas, W.L.⁴

18
- 0030291528
- Richter, D. J. J. Phys.: Condens. Matter 1996, 8, 9177-9190.
- (1996) J. Phys.: Condens. Matter , vol.8 , pp. 9177-9190
- Richter, D.J.¹

19
- 0001616879
- Engberg, D.; Wischnewski, A.; Buchenau, U.; Börjesson, L.; Sokolov, A. P.; Torell, L. M. Phys. Rev. B 1998, 58, 9087-9097.
- (1998) Phys. Rev. B , vol.58 , pp. 9087-9097
- Engberg, D.¹ Wischnewski, A.² Buchenau, U.³ Börjesson, L.⁴ Sokolov, A.P.⁵ Torell, L.M.⁶

20
- 0029276870
- Frick, B.; Richter, D. Science 1995, 267, 1939-1945.
- (1995) Science , vol.267 , pp. 1939-1945
- Frick, B.¹ Richter, D.²

21
- 3743138534
- Wutke, J.; Hernandez, J.; Li, G.; Coddens, G.; Cummins, H. Z.; Fujara, F.; Petry, W.; Sillescu, H. Phys. Rev. Lett. 1994, 72, 3052-3055.
- (1994) Phys. Rev. Lett. , vol.72 , pp. 3052-3055
- Wutke, J.¹ Hernandez, J.² Li, G.³ Coddens, G.⁴ Cummins, H.Z.⁵ Fujara, F.⁶ Petry, W.⁷ Sillescu, H.⁸

22
- 0001572152
- Hehlen, B.; Courtens, E.; Vacher, R.; Yamanaka, A.; Kataoka, K.; Inoue, K. Phys. Rev. Lett. 2000, 84, 5355-5358.
- (2000) Phys. Rev. Lett. , vol.84 , pp. 5355-5358
- Hehlen, B.¹ Courtens, E.² Vacher, R.³ Yamanaka, A.⁴ Kataoka, K.⁵ Inoue, K.⁶

23
- 0030862281
- Diehl, M.; Doster, W.; Petry, W.; Schober, H. Biophys. J. 1997, 73, 2726-2732.
- (1997) Biophys. J. , vol.73 , pp. 2726-2732
- Diehl, M.¹ Doster, W.² Petry, W.³ Schober, H.⁴

24
- 0024301557
- Smith, J. C.; Kuczera, K.; Tidor, B.; Karplus, M. Physica B 1989, 156 and 157, 437-443.
- (1989) Physica B , vol.156-157 , pp. 437-443
- Smith, J.C.¹ Kuczera, K.² Tidor, B.³ Karplus, M.⁴

25
- 0342519753
- Sokolov, A. P.; Rossler, E.; Kisliuk, A.; Quitmann, D. Phys. Rev. Lett. 1991, 71, 2062-2065.
- (1991) Phys. Rev. Lett. , vol.71 , pp. 2062-2065
- Sokolov, A.P.¹ Rossler, E.² Kisliuk, A.³ Quitmann, D.⁴

26
- 0009071257
- Angell, C. A. Science 1995, 267, 1924-1935.
- (1995) Science , vol.267 , pp. 1924-1935
- Angell, C.A.¹

27
- 0031256220
- Ngai, K. L.; Sokolov, A.; Steffen, W. J. Chem. Phys. 1997, 107, 5268-5272.
- (1997) J. Chem. Phys. , vol.107 , pp. 5268-5272
- Ngai, K.L.¹ Sokolov, A.² Steffen, W.³

28
- 15444364992
- Schirmacher, W.; Diezemann, G.; Ganter, C. Phys. Rev. Lett. 1998, 81, 136-139.
- (1998) Phys. Rev. Lett. , vol.81 , pp. 136-139
- Schirmacher, W.¹ Diezemann, G.² Ganter, C.³

29
- 4244162627
- Buchenau, U.; Galperin, Y. M.; Gurevich, V. L.; Parshin, D. A.; Rasmos, M. A.; Schober, H. R. Phys. Rev. B 1992, 46, 2798-2808.
- (1992) Phys. Rev. B , vol.46 , pp. 2798-2808
- Buchenau, U.¹ Galperin, Y.M.² Gurevich, V.L.³ Parshin, D.A.⁴ Rasmos, M.A.⁵ Schober, H.R.⁶

30
- 2342631145
- Gurevich, V. L.; Parshin, D. A.; Schober, H. R. JETP Lett. 2002, 76, 650-654
- (2002) JETP Lett. , vol.76 , pp. 650-654
- Gurevich, V.L.¹ Parshin, D.A.² Schober, H.R.³

31
- 0035588039
- Tanaka, H. J. Phys. Soc. Jpn. 2001, 70, 1178-1182.
- (2001) J. Phys. Soc. Jpn. , vol.70 , pp. 1178-1182
- Tanaka, H.¹

32
- 0017875343
- Go, N. Biopolymers 1978, 17, 1373-1379.
- (1978) Biopolymers , vol.17 , pp. 1373-1379
- Go, N.¹

33
- 0019968899
- Painter, P.; Mosher, L.; Rhoades, C. Biopolymers 1982, 21, 1469-1472.
- (1982) Biopolymers , vol.21 , pp. 1469-1472
- Painter, P.¹ Mosher, L.² Rhoades, C.³

34
- 0000392008
- Leyser, H.; Doster, W.; Diehl, M. Phys. Rev. Lett. 1999, 82, 2987-2990.
- (1999) Phys. Rev. Lett. , vol.82 , pp. 2987-2990
- Leyser, H.¹ Doster, W.² Diehl, M.³

35
- 0025091840
- Smith, J.; Kuczera, K.; Karplus, M. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 1601-1605.
- (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 1601-1605
- Smith, J.¹ Kuczera, K.² Karplus, M.³

36
- 0027431378
- Steinbach, P. J.; Brooks, B. R. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 9135-9139.
- (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 9135-9139
- Steinbach, P.J.¹ Brooks, B.R.²

37
- 0035879037
- Tarek, M.; Tobias, D. J. J. Chem. Phys. 2001, 115, 1607-1612.
- (2001) J. Chem. Phys. , vol.115 , pp. 1607-1612
- Tarek, M.¹ Tobias, D.J.²

38
- 20944443949
- Joti, Y.; Kitao, A.; Go, N. J. Am. Chem. Soc. 2005, 127, 8705-8709.
- (2005) J. Am. Chem. Soc. , vol.127 , pp. 8705-8709
- Joti, Y.¹ Kitao, A.² Go, N.³

39
- 0042861647
- Tournier, A. L.; Xu, J.; Smith, J. C. Biophys. J. 2003, 85, 1871-1875.
- (2003) Biophys. J. , vol.85 , pp. 1871-1875
- Tournier, A.L.¹ Xu, J.² Smith, J.C.³

40
- 0346216028
- Tournier, A. L.; Smith, J. C. Phys. Rev. Lett. 2003, 91, 208106.
- (2003) Phys. Rev. Lett. , vol.91 , pp. 208106
- Tournier, A.L.¹ Smith, J.C.²

41
- 0038853525
- Vojtechovsky, J.; Chu, K.; Brendzen, J.; Sweet, R. M.; Schlichting, I. Biophys. J. 1999, 77, 2153-2174.
- (1999) Biophys. J. , vol.77 , pp. 2153-2174
- Vojtechovsky, J.¹ Chu, K.² Brendzen, J.³ Sweet, R.M.⁴ Schlichting, I.⁵

42
- 84986512474
- Brooks, B. R.; Kumar, A. T. N.; Ionascu, D.; Ye, X.; Demidov, A. A.; Sjodin, T.; Wharton, D.; Barrick, D.; Sligar, S. G.; Tonetani, T.; Chamipon, P. M. J. Comput. Biol. 1983, 4, 187-217.
- (1983) J. Comput. Biol. , vol.4 , pp. 187-217
- Brooks, B.R.¹ Kumar, A.T.N.² Ionascu, D.³ Ye, X.⁴ Demidov, A.A.⁵ Sjodin, T.⁶ Wharton, D.⁷ Barrick, D.⁸ Sligar, S.G.⁹ Tonetani, T.¹⁰ Chamipon, P.M.¹¹

43
- 0041784950
- Mackerell, A. D.; et al. J. Phys. Chem. B 1998, 102, 3586-3616.
- (1998) J. Phys. Chem. B , vol.102 , pp. 3586-3616
- Mackerell, A.D.¹

44
- 0004016501
- Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-935.
- (1983) J. Chem. Phys. , vol.79 , pp. 926-935
- Jorgensen, W.L.¹ Chandrasekhar, J.² Madura, J.D.³ Impey, R.W.⁴ Klein, M.L.⁵

45
- 33645961739
- Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Pedersen, L. G. J. Chem. Phys. 1995, 103, 8577-8593.
- (1995) J. Chem. Phys. , vol.103 , pp. 8577-8593
- Essmann, U.¹ Perera, L.² Berkowitz, M.L.³ Darden, T.⁴ Pedersen, L.G.⁵

46
- 36749107785
- Andersen, H. C. J. Chem. Phys. 1980, 72, 2384-2393.
- (1980) J. Chem. Phys. , vol.72 , pp. 2384-2393
- Andersen, H.C.¹

47
- 0001538909
- Hoover, W. G. Phys. Rev. A 1985, 31, 1695-1997.
- (1985) Phys. Rev. A , vol.31 , pp. 1695-1997
- Hoover, W.G.¹

48
- 84926811618
- Nose, S.; Klein, M. L. Mol. Phys. 1983, 50, 1055-1076.
- (1983) Mol. Phys. , vol.50 , pp. 1055-1076
- Nose, S.¹ Klein, M.L.²

49
- 4444311467
- Krishnan, M.; Balasubramaniam, S. Phys. Rev. B 2003, 68, 064304-64310.
- (2003) Phys. Rev. B , vol.68 , pp. 64304-64310
- Krishnan, M.¹ Balasubramaniam, S.²

50
- 0034897471
- Simdyankin, S. I.; Dzugutov, M.; Taraskin, S. N.; Elliott, S. R. Phys. Rev. B 2001, 63, 184301-184305.
- (2001) Phys. Rev. B , vol.63 , pp. 184301-184305
- Simdyankin, S.I.¹ Dzugutov, M.² Taraskin, S.N.³ Elliott, S.R.⁴

51
- 0347616606
- Fukui, K.; Sumpter, B. G.; Noid, D. W.; Yang, C.; Tuzun, R. E. Phys. Chem. B 2000, 104, 526-531.
- (2000) Phys. Chem. B , vol.104 , pp. 526-531
- Fukui, K.¹ Sumpter, B.G.² Noid, D.W.³ Yang, C.⁴ Tuzun, R.E.⁵

52
- 0029633164
- Kneller, G. R.; Keiner, V.; Kneller, M.; Schiller, M. Comput. Phys. Comm. 1995, 91, 191-214.
- (1995) Comput. Phys. Comm. , vol.91 , pp. 191-214
- Kneller, G.R.¹ Keiner, V.² Kneller, M.³ Schiller, M.⁴

53
- 22144482668
- Meinhold, L.; Smith, J. C. Biophys. J. 2005, 88, 2554-2563.
- (2005) Biophys. J. , vol.88 , pp. 2554-2563
- Meinhold, L.¹ Smith, J.C.²

54
- 0038674547
- Zemach, A. C.; Glauber, R. J. Phys. Rev. 1956, 101, 129-136.
- (1956) Phys. Rev. , vol.101 , pp. 129-136
- Zemach, A.C.¹ Glauber, R.J.²

55
- 0000127140
- Karplus, M.; Kushick, J. N. Macromolecules 1981, 14, 325-332.
- (1981) Macromolecules , vol.14 , pp. 325-332
- Karplus, M.¹ Kushick, J.N.²

56
- 0032374086
- Kitao, A.; Hayward, S.; Go, N. Proteins 1998, 33, 496-517.
- (1998) Proteins , vol.33 , pp. 496-517
- Kitao, A.¹ Hayward, S.² Go, N.³

57
- 0034773304
- Bizzarri, A. R.; Paciaroni, A.; Arcangeli, C.; Cannistraro, S. Eur. Biophys. J. 2001, 30, 443-449.
- (2001) Eur. Biophys. J. , vol.30 , pp. 443-449
- Bizzarri, A.R.¹ Paciaroni, A.² Arcangeli, C.³ Cannistraro, S.⁴

58
- 0030249723
- Lamy, A.; Souaille, M.; Smith, J. C. Biopolymers 1996, 39, 471-478.
- (1996) Biopolymers , vol.39 , pp. 471-478
- Lamy, A.¹ Souaille, M.² Smith, J.C.³

59
- 0020771265
- Go, N.; Noguti, T.; Nishikawa, T. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 3696-3700.
- (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 3696-3700
- Go, N.¹ Noguti, T.² Nishikawa, T.³

60
- 0000991642
- Brooks, B. S.; Karplus, M. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 6571-6575.
- (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 6571-6575
- Brooks, B.S.¹ Karplus, M.²

61
- 0034500645
- Hess, B. Phys. Rev. E 2000, 62, 8438-8448.
- (2000) Phys. Rev. E , vol.62 , pp. 8438-8448
- Hess, B.¹

62
- 41349089279
- Hess, B. Phys. Rev. E 2002, 65, 031910.
- (2002) Phys. Rev. E , vol.65 , pp. 031910
- Hess, B.¹

63
- 10344261477
- Faraldo-Gómez, J. D.; Forrest, L. R.; Baaden, M.; Bond, P. J.; Domene, C.; Patargias, G.; Cuthbertson, J.; Sansom, M. S. P. Proteins: Struct., Funct., Bioinf. 2004, 57, 783-791.
- (2004) Proteins: Struct., Funct., Bioinf. , vol.57 , pp. 783-791
- Faraldo-Gómez, J.D.¹ Forrest, L.R.² Baaden, M.³ Bond, P.J.⁴ Domene, C.⁵ Patargias, G.⁶ Cuthbertson, J.⁷ Sansom, M.S.P.⁸

64
- 0037456474
- Yu, X.; Leitner, D. M. J. Phys. Chem. B 2003, 107, 1698-1707.
- (2003) J. Phys. Chem. B , vol.107 , pp. 1698-1707
- Yu, X.¹ Leitner, D.M.²

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