Molecular recognition of Watson-Crick-like purine-purine base pairs

ChemBioChem

Volumn 12, Issue 14, 2011, Pages 2155-2158

  Buckley, Ragan ^a   Enekwa, C Denise ^a   Williams, Loren Dean ^a   Hud, Nicholas V ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

DNA structures; Intercalations; Molecular recognition; Purines; Synthetic biology

Indexed keywords

ADENINE; CORALYNE; CYTOSINE; DACTINOMYCIN; DAUNORUBICIN; ELLIPTICINE; ETHIDIUM; GUANINE; INOSINE; PROFLAVINE; PURINE; THYMINE;

ARTICLE; BASE PAIRING; BINDING AFFINITY; CHEMICAL STRUCTURE; DNA BINDING; MELTING POINT; MOLECULAR RECOGNITION; PRIORITY JOURNAL; STOICHIOMETRY; ULTRAVIOLET SPECTROSCOPY; WATSON CRICK LIKE PURINE PURINE BASE PAIRING;

BASE PAIRING; BASE SEQUENCE; DNA; MODELS, MOLECULAR; PURINES;

EID: 80052744593     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.201100375     Document Type: Article

References (38)

1. J. Stombaugh, C. L. Zirbel, E. Westhof, N. B. Leontis, Nucleic Acids Res. 2009, 37, 2294-2312.
2. U. Nagaswamy, N. Voss, Z. D. Zhang, G. E. Fox, Nucleic Acids Res. 2000, 28, 375-376.
3. S. A. Benner, A. Ricardo, M. A. Carrigan, Curr. Opin. Chem. Biol. 2004, 8, 672-689.
4. G. K. Mittapalli, K. R. Reddy, H. Xiong, O. Munoz, B. Han, F. De Riccardis, R. Krishnamurthy, A. Eschenmoser, Angew. Chem. 2007, 119, 2522-2529; Angew. Chem. Int. Ed. 2007, 46, 2470-2477.
5. G. H. Clever, M. Shionoya, Coord. Chem. Rev. 2010, 254, 2391-2402.
6. A. T. Krueger, H. G. Lu, A. H. F. Lee, E. T. Kool, Acc. Chem. Res. 2007, 40, 141-150.
7. F. H. C. Crick, J. Mol. Biol. 1968, 38, 367-379.
8. B. D. Heuberger, C. Switzer, ChemBioChem 2008, 9, 2779-2783.
9. T. R. Battersby, M. Albalos, M. J. Friesenhahn, Chem. Biol. 2007, 14, 525-531.
10. M. Demeunynck, C. Bailly, W. D. Wilson, DNA and RNA Binders: From Small Molecules to Drugs, Vols. 1 and 2, Wiley-VCH, Weinheim, 2003.
11. H. A. Ho, K. Dore, M. Boissinot, M. G. Bergeron, R. M. Tanguay, D. Boudreau, M. Leclerc, J. Am. Chem. Soc. 2005, 127, 12673-12676.
12. A. L. Benvin, Y. Creeger, G. W. Fisher, B. Ballou, A. S. Waggoner, B. A. Armitage, J. Am. Chem. Soc. 2007, 129, 2025-2034.
13. Ö. Persil, N. V. Hud, Trends Biotechnol. 2007, 25, 433-436.
14. E. D. Horowitz, A. E. Engelhart, M. C. Chen, K. A. Quarles, M. W. Smith, D. G. Lynn, N. V. Hud, Proc. Natl. Acad. Sci. USA 2010, 107, 5288-5293.
15. N. V. Hud, S. S. Jain, X. Li, D. G. Lynn, Chem. Biodiversity 2007, 4, 768-783.
16. S. S. Jain, F. A. L. Anet, C. J. Stahle, N. V. Hud, Angew. Chem. 2004, 116, 2038-2042; Angew. Chem. Int. Ed. 2004, 43, 2004-2008.
17. N. V. Hud, F. A. L. Anet, J. Theor. Biol. 2000, 205, 543-562.
18. N. C. Garbett, D. E. Graves, Curr. Med. Chem. 2004, 11, 149-172.
19. H. M. Berman, W. Stallings, H. L. Carrell, J. P. Glusker, S. Neidle, G. Taylor, A. Achari, Biopolymers 1979, 18, 2405-2429.
20. J. Olmsted, D. R. Kearns, Biochemistry 1977, 16, 3647-3654.
21. C. C. Tsai, S. C. Jain, H. M. Sobell, Proc. Natl. Acad. Sci. USA 1975, 72, 628-632.
22. L. S. Lerman, J. Mol. Biol. 1961, 3, 18-30.
23. D. Voet, Nature 1977, 269, 285-286.
24. R. A. G. Friedman, G. S. Manning, Biopolymers 1984, 23, 2671-2714.
25. E. Nordmeier, J. Phys. Chem. 1992, 96, 6045-6055.
26. V. A. Bloomfield, D. M. Crothers, I. Tinoco, Nucleic Acids: Structures, Properties, and Functions, University Science Books, Sausalito, 2000, p. 794.
27. Ö. P. Çetinkol, N. V. Hud, Nucleic Acids Res. 2009, 37, 611-621.
28. X. G. Qu, J. B. Chaires, Methods Enzymol. 2000, 321, 353-369.
29. W. Likussar, Anal. Chem. 1973, 45, 1926-1931.
30. W. Likussar, D. F. Boltz, Anal. Chem. 1971, 43, 1265-1272.
31. D. M. Crothers, Biopolymers 1968, 6, 575-584.
32. K. S. Huang, M. J. Haddadin, M. M. Olmstead, M. J. Kurth, J. Org. Chem. 2001, 66, 1310-1315.
33. D. A. Case, T. A. Darden, I. T. E. Cheatham, C. L. Simmerling, J. Wang, R. E. Duke, R. Luo, K. M. Merz, B. Wang, D. A. Pearlman, M. Crowley, S. Brozell, V. Tsui, H. Gohlke, J. Mongan, V. Hornak, G. Cui, P. Beroza, C. Schafmeister, J. W. Caldwell, W. S. Ross, P. A. Kollman, AMBER8, University of California, San Francisco (USA), 2010.
34. F.-Y. Dupradeau, A. Pigache, T. Zaffran, C. Savineau, R. Lelong, N. Grivel, D. Lelong, W. Rosanski, P. Cieplak, Phys. Chem. Chem. Phys. 2010, 12, 7821-7839.
35. R. Lavery, M. Moakher, J. H. Maddocks, D. Petkeviciute, K. Zakrzewska, Nucleic Acids Res. 2009, 37, 5917-5929.
36. E. D. Horowitz, S. Lilavivat, B. W. Holladay, M. W. Germann, N. V. Hud, J. Am. Chem. Soc. 2009, 131, 5831-5838.
37. E. D. Horowitz, N. V. Hud, J. Am. Chem. Soc. 2006, 128, 15380-15381.
38. C. Roberts, J. C. Chaput, C. Switzer, Chem. Biol. 1997, 4, 899-908.