-
2
-
-
69549126587
-
Toward a microscopic model of bidirectional synaptic plasticity
-
G. C. Castellani A. Bazzani L. N. Cooper Toward a microscopic model of bidirectional synaptic plasticity PNAS 2009 106 33 14091 14096
-
(2009)
PNAS
, vol.106
, Issue.33
, pp. 14091-14096
-
-
Castellani, G.C.1
Bazzani, A.2
Cooper, L.N.3
-
3
-
-
58149382580
-
MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc
-
B. D. Aguda Y. Kim M. G. Piper-Hunter A. Friedman C. B. Marsh MicroRNA regulation of a cancer network: consequences of the feedback loops involving miR-17-92, E2F, and Myc PNAS 2008 105 50 19678 19683
-
(2008)
PNAS
, vol.105
, Issue.50
, pp. 19678-19683
-
-
Aguda, B.D.1
Kim, Y.2
Piper-Hunter, M.G.3
Friedman, A.4
Marsh, C.B.5
-
5
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
DOI 10.1038/35002131
-
T. S. Gardner C. R. Cantor J. J. Collins Construction of a genetic toggle switch in Escherichia coli Nature 2000 403 339 342 (Pubitemid 30062394)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
6
-
-
2942614884
-
Programmable cells: Interfacing natural and engineered gene networks
-
DOI 10.1073/pnas.0402940101
-
H. Kobayashi M. Kaern M. Araki K. Chung T. S. Gardner C. R. Cantor J. J. Collins Programmable cells: Interfacing natural and engineered gene networks PNAS 2004 101 22 8414 8419 (Pubitemid 38736589)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.22
, pp. 8414-8419
-
-
Kobayashi, H.1
Kaern, M.2
Araki, M.3
Chung, K.4
Gardner, T.S.5
Cantor, C.R.6
Collins, J.J.7
-
7
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of-target mRNAs
-
DOI 10.1038/nature03315
-
L. P. Lim N. C. Lau P. Garrett-Engele A. Grimson J. M. Schelter et al., Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs Nature 2005 433 769 773 (Pubitemid 40292988)
-
(2005)
Nature
, vol.433
, Issue.7027
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
8
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
DOI 10.1038/nature03702
-
J. Lu G. Getz E. A. Miska E. Alvarez-Saavedra J. Lamb D. Peck A. Sweet-Cordero B. L. Ebert R. H. Mak A. A. Ferrando et al., MicroRNA expression profiles classify human cancers Nature 2005 435 834 838 (Pubitemid 40839735)
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebert, B.L.8
Mak, R.H.9
Ferrando, A.A.10
Downing, J.R.11
Jacks, T.12
Horvitz, H.R.13
Golub, T.R.14
-
9
-
-
58549110252
-
Stochastic modelling for quantitative description of heterogeneous biological systems
-
D. J. Wilkinson Stochastic modelling for quantitative description of heterogeneous biological systems Nat. Rev. Genet. 2009 10 122 133
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 122-133
-
-
Wilkinson, D.J.1
-
11
-
-
79952221879
-
Prediction and genetic demonstration of a role for activator E2Fs in Myc-induced tumors
-
K. Fujiwara I. Yuwanita D. P. Hollern E. R. Andrechek Prediction and genetic demonstration of a role for activator E2Fs in Myc-induced tumors Cancer Res. 2011 71 1924 1932
-
(2011)
Cancer Res.
, vol.71
, pp. 1924-1932
-
-
Fujiwara, K.1
Yuwanita, I.2
Hollern, D.P.3
Andrechek, E.R.4
-
12
-
-
79953010469
-
E2f1-3 are critical for myeloid development
-
P. Trikha N. Sharma R. Opavsky A. Reyes C. Pena M. C. Ostrowski M. F. Roussel G. Leone E2f1-3 are critical for myeloid development J. Biol. Chem. 2011 286 4783 4795
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 4783-4795
-
-
Trikha, P.1
Sharma, N.2
Opavsky, R.3
Reyes, A.4
Pena, C.5
Ostrowski, M.C.6
Roussel, M.F.7
Leone, G.8
-
13
-
-
23744507860
-
E2F1 is crucial for E2F-dependent apoptosis
-
E. Lazzerini Denchi K. Helin E2F1 is crucial for E2F-dependent apoptosis EMBO Rep. 2005 6 7 661 668
-
(2005)
EMBO Rep.
, vol.6
, Issue.7
, pp. 661-668
-
-
Lazzerini Denchi, E.1
Helin, K.2
-
14
-
-
20444479428
-
C-Myc-regulated microRNAs modulate E2F1 expression
-
DOI 10.1038/nature03677
-
K. A. O'Donnell E. A. Wentzel K. I. Zeller C. V. Dang J. T. Mendell c-Myc-regulated microRNAs modulate E2F1 expression Nature 2005 435 7043 839 843 (Pubitemid 40839736)
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
Dang, C.V.4
Mendell, J.T.5
-
15
-
-
54049156472
-
Control of cell proliferation pathways by microRNAs
-
M. J. Bueno I. P. de Castro M. Malumbres Control of cell proliferation pathways by microRNAs Cell Cycle 2008 7 3143 3148
-
(2008)
Cell Cycle
, vol.7
, pp. 3143-3148
-
-
Bueno, M.J.1
De Castro, I.P.2
Malumbres, M.3
-
16
-
-
18744394637
-
Targeting c-Myc-activated genes with a correlation method: Detection of global changes in large gene expression network dynamics
-
DOI 10.1073/pnas.0502081102
-
D. Remondini B. OConnell N. Intrator J. M. Sedivy N. Neretti G. C. Castellani L. N. Cooper Targeting c-Myc-activated genes with a correlation method: detection of global changes in large gene expression network dynamics PNAS 2005 102 19 6902 6906 (Pubitemid 40675414)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.19
, pp. 6902-6906
-
-
Remondini, D.1
O'Connell, B.2
Intrator, N.3
Sedivy, J.M.4
Neretti, N.5
Castellani, G.C.6
Cooper, L.N.7
-
17
-
-
34047267329
-
An E2F/miR-20a autoregulatory feedback loop
-
DOI 10.1074/jbc.M608939200
-
Y. Sylvestre V. De Guire E. Querido U. K. Mukhopadhyay V. Bourdeau F. Major G. Ferbeyre P. Chartrand An E2F/miR-20a autoregulatory feedback loop J. Biol. Chem. 2007 282 2135 2143 (Pubitemid 47076740)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.4
, pp. 2135-2143
-
-
Sylvestre, Y.1
De Guire, V.2
Querido, E.3
Mukhopadhyay, U.K.4
Bourdeau, V.5
Major, F.6
Ferbeyre, G.7
Chartrand, P.8
-
18
-
-
34548381748
-
Myced Messages: Myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron
-
H. A. Coller J. J. Forman A. Legesse-Miller Myced Messages: Myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron PLoS Genet. 2007 3 e146
-
(2007)
PLoS Genet.
, vol.3
, pp. 146
-
-
Coller, H.A.1
Forman, J.J.2
Legesse-Miller, A.3
-
19
-
-
0037119587
-
Stochastic gene expression in a single cell
-
DOI 10.1126/science.1070919
-
M. B. Elowitz M. J. Levine E. D. Siggia P. S. Swain Stochastic Gene Expression in a Single Cell Science 2002 297 1183 1186 10.1126/science.1070919 (Pubitemid 36193353)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
21
-
-
0242416539
-
Noise in eukaryotic gene expression
-
DOI 10.1038/nature01546
-
W. J. Blake M. Kaern C. R. Cantor J. J. Collins Noise in Eukaryotic Gene Expression Nature 2003 422 633 637 10.1038/nature01546 (Pubitemid 36460419)
-
(2003)
Nature
, vol.422
, Issue.6932
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
23
-
-
33645429016
-
Exact Stochastic Simulation of Coupled Chemical Reactions
-
D. T. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions J. Phys. Chem. 1997 81 25 2340 2361
-
(1997)
J. Phys. Chem.
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
24
-
-
33645472191
-
Systematic identification of microRNA functions by combining target prediction and expression profiling
-
X. Wang X. Wang Systematic identification of microRNA functions by combining target prediction and expression profiling Nucleic Acids Res. 2006 34 1646 1652
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1646-1652
-
-
Wang, X.1
Wang, X.2
-
26
-
-
70349327943
-
Formal Analysis of the Genetic Toggle CMSB 2009
-
Sept. 2009, Bologna, Italy, Degano and R.Gorrieri (editors), pages 96-110, LNBI 5688, Springer
-
G. Bella, P. Lio, Formal Analysis of the Genetic Toggle CMSB 2009, 7th Conference on Computational Methods in Systems Biology, Sept. 2009, Bologna, Italy, P.Degano and R.Gorrieri (editors), pages 96-110, LNBI 5688, Springer
-
7th Conference on Computational Methods in Systems Biology
-
-
Bella, G.1
Lio, P.2
-
27
-
-
80052740074
-
Analysing the microRNA-17-92/Myc/E2F/RB Compound Toggle Switch by Theorem Proving NETTAB 2009
-
June 2009, Catania, Italy. Romano, et al. (editors), pages 59-62
-
G. Bella, P. Lio, Analysing the microRNA-17-92/Myc/E2F/RB Compound Toggle Switch by Theorem Proving NETTAB 2009, 9th Workshop on Network Tools and Applications in Biology, June 2009, Catania, Italy. P.Romano, et al. (editors), pages 59-62
-
9th Workshop on Network Tools and Applications in Biology
-
-
Bella, G.1
Lio, P.2
-
28
-
-
36649025655
-
Oncomirs: The discovery and progress of microRNAs in cancers
-
W. C. Cho Oncomirs: the discovery and progress of microRNAs in cancers Mol. Cancer 2007 6 60
-
(2007)
Mol. Cancer
, vol.6
, pp. 60
-
-
Cho, W.C.1
-
29
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
D. P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 2004 116 281 297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
30
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
DOI 10.1101/gad.1074403
-
Lee P. Lim Nelson C. Lau Earl G. Weinstein Aliaa Abdelhakim Soraya Yekta Matthew W. Rhoades Christopher B. Burge David P. Bartel The microRNAs of Caenorhabditis elegans Genes Dev. 2003 17 8 991 1008 (Pubitemid 36459452)
-
(2003)
Genes and Development
, vol.17
, Issue.8
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
31
-
-
77955615604
-
Direct Quantification of Single-Molecules of MicroRNA by Total Internal Reflection Fluorescence Microscopy
-
Ho-Man Chan Lai-Sheung Chan Ricky Ngok-Shun Wong Hung-Wing Li Direct Quantification of Single-Molecules of MicroRNA by Total Internal Reflection Fluorescence Microscopy Anal. Chem. 2010 82 6911 6918
-
(2010)
Anal. Chem.
, vol.82
, pp. 6911-6918
-
-
Chan, H.-M.1
Chan, L.-S.2
Wong, R.N.-S.3
Li, H.-W.4
-
33
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
-
A. Arkin J. Ross H. H. McAdams Stochastic kinetic analysis of developmental pathway bifurcation in phage-infected E. coli cells Genetics 1998 149 1633 1648 (Pubitemid 28375939)
-
(1998)
Genetics
, vol.149
, Issue.4
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
34
-
-
0034688220
-
Circadian clocks limited by noise
-
N. Barkai S. Leibler Biological rhythms: Circadian clocks limited by noise Nature 2000 403 267 268 (Pubitemid 30062374)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
36
-
-
3843112035
-
Guldberg and waage and the law of mass action
-
E. W. Lund Guldberg and waage and the law of mass action J. Chem. Educ. 1965 42 548 550
-
(1965)
J. Chem. Educ.
, vol.42
, pp. 548-550
-
-
Lund, E.W.1
-
37
-
-
75749152362
-
Computational cellular dynamics based on the chemical master equation: A challenge for understanding complexity
-
J. Liang H. Qian Computational cellular dynamics based on the chemical master equation: A challenge for understanding complexity Comput. Sci. Technol. 2010 25 154 168
-
(2010)
Comput. Sci. Technol.
, vol.25
, pp. 154-168
-
-
Liang, J.1
Qian, H.2
-
38
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
T. B. Kepler T. C. Elston Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations Biophys. J. 2001 81 3116 3136 (Pubitemid 33111463)
-
(2001)
Biophysical Journal
, vol.81
, Issue.6
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
39
-
-
0037444724
-
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
-
C. V. Rao A. P. Arkin Stochastic chemical kinetics and the quasi-steady-state assumption: application to the Gillespie algorithm J. Chem. Phys. 2003 118 4999 5010
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 4999-5010
-
-
Rao, C.V.1
Arkin, A.P.2
-
40
-
-
0037605637
-
Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible
-
J. E. Ferrell W. Xiong Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible Chaos 2001 11 227 236
-
(2001)
Chaos
, vol.11
, pp. 227-236
-
-
Ferrell, J.E.1
Xiong, W.2
-
42
-
-
16244397718
-
-
In QEST
-
M. Z. Kwiatkowska, G. Norman, D. Parker, Prism 2.0: A tool for probabilistic model checking, In QEST, 2004, pp. 322-323
-
(2004)
Prism 2.0: A Tool for Probabilistic Model Checking
, pp. 322-323
-
-
Kwiatkowska, M.Z.1
Norman, G.2
Parker, D.3
-
43
-
-
84958740468
-
-
In Computer Performance Evaluation/TOOLS
-
D. Daly, D. D. Deavours, J. M. Doyle, P. G. Webster, W. H. Sanders, Mobius: An extensible tool for performance and dependability modeling, In Computer Performance Evaluation/TOOLS, 2000, pp. 332-336
-
(2000)
Mobius: An Extensible Tool for Performance and Dependability Modeling
, pp. 332-336
-
-
Daly, D.1
Deavours, D.D.2
Doyle, J.M.3
Webster, P.G.4
Sanders, W.H.5
-
44
-
-
70349308811
-
Approximation of event probabilities in noisy cellular processes
-
volume 5688 of LNCS, pages 173188. Springer, 2009
-
F. Didier, T.A. Henzinger, M. Mateescu, and V. Wolf. Approximation of event probabilities in noisy cellular processes. In Proc. of CMSB09, volume 5688 of LNCS, pages 173188. Springer, 2009
-
Proc. of CMSB09
-
-
Didier, F.1
Henzinger, T.A.2
Mateescu, M.3
Wolf, V.4
-
46
-
-
84958752836
-
-
In Computer Performance Evaluation/TOOLS
-
C. Hirel, R. A. Sahner, X. Zang, K. S. Trivedi, Reliability and performability modeling using sharpe 2000, In Computer Performance Evaluation/TOOLS, 2000, pp. 345-349
-
(2000)
Reliability and Performability Modeling Using Sharpe 2000
, pp. 345-349
-
-
Hirel, C.1
Sahner, R.A.2
Zang, X.3
Trivedi, K.S.4
-
48
-
-
77958514250
-
The Chemical Master Equation Approach to Nonequilibrium Steady-State of Open Biochemical Systems: Linear Single-Molecule Enzyme Kinetics and Nonlinear Biochemical Reaction Networks
-
Hong Qian Lisa M. Bishop The Chemical Master Equation Approach to Nonequilibrium Steady-State of Open Biochemical Systems: Linear Single-Molecule Enzyme Kinetics and Nonlinear Biochemical Reaction Networks Int. J. Mol. Sci. 2010 11 3472 3500
-
(2010)
Int. J. Mol. Sci.
, vol.11
, pp. 3472-3500
-
-
Qian, H.1
Bishop, L.M.2
|