-
1
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected E. coli cells
-
Arkin, A., Ross, J., McAdams, H.H.: Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected E. coli cells. Genetics 149, 1633-1648 (1998)
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
2
-
-
0034688220
-
Biological rhythms: Circadian clocks limited by noise
-
Barkai, N., Leibler, S.: Biological rhythms: Circadian clocks limited by noise. Nature 403, 267-268 (2000)
-
(2000)
Nature
, vol.403
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
3
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake, W.J., Kaern, M., Cantor, C.R., Collins, J.J.: Noise in eukaryotic gene expression. Nature 422, 633-637 (2003)
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
5
-
-
35348848671
-
A Krylov-based finite state projection algorithm for solving the chemical master equation arising in the discrete modelling of biological systems
-
Boson Books, pp
-
Burrage, K., Hegland, M., Macnamara, F., Sidje, R.: A Krylov-based finite state projection algorithm for solving the chemical master equation arising in the discrete modelling of biological systems. In: Proc. of the Markov 150th Anniversary Conference, Boson Books, pp. 21-38 (2006)
-
(2006)
Proc. of the Markov 150th Anniversary Conference
, pp. 21-38
-
-
Burrage, K.1
Hegland, M.2
Macnamara, F.3
Sidje, R.4
-
6
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz,M.B., Levine, M.J., Siggia, E.D., Swain, P.S.: Stochastic gene expression in a single cell. Science 297, 1183-1186 (2002)
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, M.J.2
Siggia, E.D.3
Swain, P.S.4
-
7
-
-
0037119578
-
Small numbers of big molecules
-
Fedoroff, N., Fontana, W.: Small numbers of big molecules. Science 297, 1129-1131 (2002)
-
(2002)
Science
, vol.297
, pp. 1129-1131
-
-
Fedoroff, N.1
Fontana, W.2
-
8
-
-
0023999020
-
Computing Poisson probabilities
-
Fox, B.L., Glynn, P.W.: Computing Poisson probabilities. Communications of the ACM 31(4), 440-445 (1988)
-
(1988)
Communications of the ACM
, vol.31
, Issue.4
, pp. 440-445
-
-
Fox, B.L.1
Glynn, P.W.2
-
9
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81(25), 2340-2361 (1977)
-
(1977)
J. Phys. Chem
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
11
-
-
0037154231
-
Robustness of circadian rhythms with respect to molecular noise
-
Gonze, D., Halloy, J., Goldbeter, A.: Robustness of circadian rhythms with respect to molecular noise. PNAS, USA 99(2), 673-678 (2002)
-
(2002)
PNAS, USA
, vol.99
, Issue.2
, pp. 673-678
-
-
Gonze, D.1
Halloy, J.2
Goldbeter, A.3
-
12
-
-
2542424156
-
Stochastic models for circadian oscillations: Emergence of a biological rhythm
-
Gonze, D., Halloy, J., Goldbeter, A.: Stochastic models for circadian oscillations: Emergence of a biological rhythm. Quantum Chemistry 98, 228-238 (2004)
-
(2004)
Quantum Chemistry
, vol.98
, pp. 228-238
-
-
Gonze, D.1
Halloy, J.2
Goldbeter, A.3
-
13
-
-
18844402156
-
Quasiequilibrium approximation of fast reaction kinetics in stochastic biochemical systems
-
Goutsias, J.: Quasiequilibrium approximation of fast reaction kinetics in stochastic biochemical systems. J. Chem. Phys. 122(18), 184102 (2005)
-
(2005)
J. Chem. Phys
, vol.122
, Issue.18
, pp. 184102
-
-
Goutsias, J.1
-
14
-
-
0034050722
-
Noise-based switches and amplifiers for gene expression
-
Hasty, J., Pradines, J., Dolnik,M., Collins, J.J.: Noise-based switches and amplifiers for gene expression. PNAS, USA 97, 2075 (2000)
-
(2000)
PNAS, USA
, vol.97
, pp. 2075
-
-
Hasty, J.1
Pradines, J.2
Dolnik, M.3
Collins, J.J.4
-
15
-
-
42449098178
-
Efficient computation of transient solutions of the chemical master equation based on uniformization and quasi-Monte carlo
-
Hellander, A.: Efficient computation of transient solutions of the chemical master equation based on uniformization and quasi-Monte carlo. J. Chem. Phys. 128(15), 154109 (2008)
-
(2008)
J. Chem. Phys
, vol.128
, Issue.15
, pp. 154109
-
-
Hellander, A.1
-
16
-
-
70349371001
-
Linking systems biology models to data: A stochastic kinetic model of p53 oscillations
-
O'Hagan, A, West, M, eds, Oxford University Press, Oxford
-
Henderson, D.A., Boys, R.J., Proctor, C.J.,Wilkinson, D.J.: Linking systems biology models to data: a stochastic kinetic model of p53 oscillations. In: O'Hagan, A., West, M. (eds.) Handbook of Applied Bayesian Analysis. Oxford University Press, Oxford (2009)
-
(2009)
Handbook of Applied Bayesian Analysis
-
-
Henderson, D.A.1
Boys, R.J.2
Proctor, C.J.3
Wilkinson, D.J.4
-
17
-
-
70350241659
-
Sliding window abstraction for infinite Markov chains
-
Proc. CAV, Springer, Heidelberg to appear
-
Henzinger, T., Mateescu, M., Wolf, V.: Sliding window abstraction for infinite Markov chains. In: Proc. CAV. LNCS. Springer, Heidelberg (to appear, 2009)
-
(2009)
LNCS
-
-
Henzinger, T.1
Mateescu, M.2
Wolf, V.3
-
19
-
-
0035896577
-
The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression
-
Kierzek, A., Zaim, J., Zielenkiewicz, P.: The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression. Journal of Biological Chemistry 276(11), 8165-8172 (2001)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.11
, pp. 8165-8172
-
-
Kierzek, A.1
Zaim, J.2
Zielenkiewicz, P.3
-
20
-
-
70349347889
-
-
Law, A., Kelton, D.: SimulationModelling and Analysis.McGraw-Hill Education, New York (2000)
-
Law, A., Kelton, D.: SimulationModelling and Analysis.McGraw-Hill Education, New York (2000)
-
-
-
-
21
-
-
0033517148
-
Robustness of a gene regulatory circuit
-
Little, J.W., Shepley, D.P., Wert, D.W.: Robustness of a gene regulatory circuit. The EMBO Journal 18(15), 4299-4307 (1999)
-
(1999)
The EMBO Journal
, vol.18
, Issue.15
, pp. 4299-4307
-
-
Little, J.W.1
Shepley, D.P.2
Wert, D.W.3
-
22
-
-
41749107942
-
Stochasticity and Cell Fate
-
Losick, R., Desplan, C.: Stochasticity and Cell Fate. Science 320(5872), 65-68 (2008)
-
(2008)
Science
, vol.320
, Issue.5872
, pp. 65-68
-
-
Losick, R.1
Desplan, C.2
-
23
-
-
34547604468
-
Noise in gene expression determines cell fate in Bacillus subtilis
-
Maamar, H., Raj, A., Dubnau, D.: Noise in gene expression determines cell fate in Bacillus subtilis. Science 317(5837), 526-529 (2007)
-
(2007)
Science
, vol.317
, Issue.5837
, pp. 526-529
-
-
Maamar, H.1
Raj, A.2
Dubnau, D.3
-
24
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams, H.H., Arkin, A.: Stochastic mechanisms in gene expression. PNAS, USA 94, 814-819 (1997)
-
(1997)
PNAS, USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.2
-
26
-
-
33751347484
-
The finite state projection algorithm for the solution of the chemical master equation
-
Munsky, B., Khammash, M.: The finite state projection algorithm for the solution of the chemical master equation. J. Chem. Phys. 124, 044144 (2006)
-
(2006)
J. Chem. Phys
, vol.124
, pp. 044144
-
-
Munsky, B.1
Khammash, M.2
-
27
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak, E.M., Thattai, M., Kurtser, I., Grossman, A.D., van Oudenaarden, A.: Regulation of noise in the expression of a single gene. Nature Genetics 31(1), 69-73 (2002)
-
(2002)
Nature Genetics
, vol.31
, Issue.1
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
van Oudenaarden, A.5
-
28
-
-
30044438457
-
DNA replication origins fire stochastically in fission yeast
-
Patel, P., Arcangioli, B., Baker, S., Bensimon, A., Rhind, N.: DNA replication origins fire stochastically in fission yeast. Mol. Biol. Cell 17, 308-316 (2006)
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 308-316
-
-
Patel, P.1
Arcangioli, B.2
Baker, S.3
Bensimon, A.4
Rhind, N.5
-
29
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson, J.: Summing up the noise in gene networks. Nature 427(6973), 415-418 (2004)
-
(2004)
Nature
, vol.427
, Issue.6973
, pp. 415-418
-
-
Paulsson, J.1
-
30
-
-
0037078982
-
Control, exploitation and tolerance of intracellular noise
-
Rao, C., Wolf, D., Arkin, A.: Control, exploitation and tolerance of intracellular noise. Nature 420(6912), 231-237 (2002)
-
(2002)
Nature
, vol.420
, Issue.6912
, pp. 231-237
-
-
Rao, C.1
Wolf, D.2
Arkin, A.3
-
32
-
-
70349352585
-
On the statistical accuracy of stochastic simulation algorithms implemented in Dizzy
-
Sandmann, W., Maier, C.: On the statistical accuracy of stochastic simulation algorithms implemented in Dizzy. In: Proc. WCSB, pp. 153-156 (2008)
-
(2008)
Proc. WCSB
, pp. 153-156
-
-
Sandmann, W.1
Maier, C.2
-
33
-
-
70349367251
-
A computational stochastic modeling formalism for biological networks
-
Sandmann, W.,Wolf, V.: A computational stochastic modeling formalism for biological networks. Enformatika Transactions on Engineering, Computing and Technology 14, 132-137 (2006)
-
(2006)
Enformatika Transactions on Engineering, Computing and Technology
, vol.14
, pp. 132-137
-
-
Sandmann, W.1
Wolf, V.2
-
34
-
-
47149085662
-
-
Sandmann, W., Wolf, V.: Computational probability for systems biology. In: Fisher, J. (ed.) FMSB 2008. LNCS (LNBI), 5054, pp. 33-47. Springer, Heidelberg (2008)
-
Sandmann, W., Wolf, V.: Computational probability for systems biology. In: Fisher, J. (ed.) FMSB 2008. LNCS (LNBI), vol. 5054, pp. 33-47. Springer, Heidelberg (2008)
-
-
-
-
35
-
-
55549104055
-
Inexact uniformization method for computing transient distributions of Markov chains
-
Sidje, R., Burrage, K., MacNamara, S.: Inexact uniformization method for computing transient distributions of Markov chains. SIAM J. Sci. Comput. 29(6), 2562-2580 (2007)
-
(2007)
SIAM J. Sci. Comput
, vol.29
, Issue.6
, pp. 2562-2580
-
-
Sidje, R.1
Burrage, K.2
MacNamara, S.3
-
36
-
-
0036400749
-
Stochastic vs. deterministic modeling of intracellular viral kinetics
-
Srivastava, R., You, L., Summers, J., Yin, J.: Stochastic vs. deterministic modeling of intracellular viral kinetics. Journal of Theoretical Biology 218, 309-321 (2002)
-
(2002)
Journal of Theoretical Biology
, vol.218
, pp. 309-321
-
-
Srivastava, R.1
You, L.2
Summers, J.3
Yin, J.4
-
38
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain, P.S., Elowitz,M.B., Siggia, E.D.: Intrinsic and extrinsic contributions to stochasticity in gene expression. PNAS, USA 99(20), 12795-12800 (2002)
-
(2002)
PNAS, USA
, vol.99
, Issue.20
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
39
-
-
0035902599
-
Intrinsic noise in gene regulatory networks
-
Thattai, M., van Oudenaarden, A.: Intrinsic noise in gene regulatory networks. PNAS, USA 98(15), 8614-8619 (2001)
-
(2001)
PNAS, USA
, vol.98
, Issue.15
, pp. 8614-8619
-
-
Thattai, M.1
van Oudenaarden, A.2
-
40
-
-
3142577523
-
Stochastic approaches for modelling in vivo reactions
-
Turner, T.E., Schnell, S., Burrage, K.: Stochastic approaches for modelling in vivo reactions. Computational Biology and Chemistry 28, 165-178 (2004)
-
(2004)
Computational Biology and Chemistry
, vol.28
, pp. 165-178
-
-
Turner, T.E.1
Schnell, S.2
Burrage, K.3
-
42
-
-
56249093501
-
Signatures of combinatorial regulation in intrinsic biological noise
-
Warmflash, A., Dinner, A.: Signatures of combinatorial regulation in intrinsic biological noise. PNAS 105(45), 17262-17267 (2008)
-
(2008)
PNAS
, vol.105
, Issue.45
, pp. 17262-17267
-
-
Warmflash, A.1
Dinner, A.2
-
44
-
-
70349357482
-
-
Zhang, J., Watson, L.T., Cao, Y.: A modified uniformization method for the solution of the chemical master equation. TR-07-31, Computer Science, Virginia Tech. (2007)
-
Zhang, J., Watson, L.T., Cao, Y.: A modified uniformization method for the solution of the chemical master equation. TR-07-31, Computer Science, Virginia Tech. (2007)
-
-
-
|