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Volumn 11, Issue 7, 2011, Pages 1234-1242

Phylogenetic diversity of Fe(III)-reducing microorganisms in rice paddy soil: Enrichment cultures with different short-chain fatty acids as electron donors

Author keywords

Enrichment culture; Fe(III) reducing bacteria; Paddy soil; Terminal restriction fragment length polymorphism (T RFLP)

Indexed keywords

BIOGEOCHEMISTRY; COMMUNITY STRUCTURE; ELECTRON; ESTER; FATTY ACID; FERRIHYDRITE; GENETIC ANALYSIS; GENETIC MARKER; IRON-REDUCING BACTERIUM; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; PADDY FIELD; PHYLOGENETICS; SOIL ECOSYSTEM; SOIL MICROORGANISM; SPECIES DIVERSITY;

EID: 80052643947     PISSN: 14390108     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11368-011-0371-2     Document Type: Article
Times cited : (84)

References (43)
  • 1
    • 0035015020 scopus 로고    scopus 로고
    • Characterization of root exudates at different growth stages of ten rice (Oryza sativa L.) cultivars
    • Aulakh MS, Wassmann R, Bueno C, Kreuzwieser J, Rennenberg H (2001) Characterization of root exudates at different growth stages of ten rice (Oryza sativa L.) cultivars. Plant Biol 3: 139-148.
    • (2001) Plant Biol , vol.3 , pp. 139-148
    • Aulakh, M.S.1    Wassmann, R.2    Bueno, C.3    Kreuzwieser, J.4    Rennenberg, H.5
  • 2
    • 33845886683 scopus 로고    scopus 로고
    • Sporotalea propionica gen. nov sp nov., a hydrogen-oxidizing, oxygen-reducing, propionigenic Firmicute from the intestinal tract of a soil-feeding termite
    • Boga HI, Ji R, Ludwig W, Brune A (2007) Sporotalea propionica gen. nov sp nov., a hydrogen-oxidizing, oxygen-reducing, propionigenic Firmicute from the intestinal tract of a soil-feeding termite. Arch Microbiol 187: 15-27.
    • (2007) Arch Microbiol , vol.187 , pp. 15-27
    • Boga, H.I.1    Ji, R.2    Ludwig, W.3    Brune, A.4
  • 3
    • 71749098364 scopus 로고    scopus 로고
    • Uranium reduction and resistance to reoxidation under iron-reducing and sulfate-reducing conditions
    • Boonchayaanant B, Nayak D, Du X, Criddle CS (2009) Uranium reduction and resistance to reoxidation under iron-reducing and sulfate-reducing conditions. Water Res 43: 4652-4664.
    • (2009) Water Res , vol.43 , pp. 4652-4664
    • Boonchayaanant, B.1    Nayak, D.2    Du, X.3    Criddle, C.S.4
  • 6
    • 0002502947 scopus 로고
    • Reduction of ferric compounds by soil bacteria
    • Bromfield SM (1954) Reduction of ferric compounds by soil bacteria. J Gen Microbiol 11: 1-6.
    • (1954) J Gen Microbiol , vol.11 , pp. 1-6
    • Bromfield, S.M.1
  • 7
    • 0141542682 scopus 로고    scopus 로고
    • Electricity generation by direct oxidation of glucose in mediatorless microbial fuel cells
    • Chaudhuri SK, Lovley DR (2003) Electricity generation by direct oxidation of glucose in mediatorless microbial fuel cells. Nat Biotechnol 21: 1229-1232.
    • (2003) Nat Biotechnol , vol.21 , pp. 1229-1232
    • Chaudhuri, S.K.1    Lovley, D.R.2
  • 10
    • 0032809528 scopus 로고    scopus 로고
    • Dissimilatory Fe(III) reduction by Clostridium beijerinckii isolated from freshwater sediment using Fe(III) maltol enrichment
    • Dobbin PS, Carter JP, San Juan CGS, von Hobe M, Powell AK, Richardson DJ (1999) Dissimilatory Fe(III) reduction by Clostridium beijerinckii isolated from freshwater sediment using Fe(III) maltol enrichment. FEMS Microbiol Lett 176: 131-138.
    • (1999) FEMS Microbiol Lett , vol.176 , pp. 131-138
    • Dobbin, P.S.1    Carter, J.P.2    San Juan, C.G.S.3    von Hobe, M.4    Powell, A.K.5    Richardson, D.J.6
  • 13
    • 84979410142 scopus 로고
    • 3 by saccharolytic Clostridia and Bacillus polymyxa under anaerobic conditions
    • 3 by saccharolytic Clostridia and Bacillus polymyxa under anaerobic conditions. Z Pflanz Bodenkunde 137: 108-115.
    • (1974) Z Pflanz Bodenkunde , vol.137 , pp. 108-115
    • Hammann, R.1    Ottow, J.C.G.2
  • 14
    • 77952669690 scopus 로고    scopus 로고
    • Dynamics of sulfate reduction and sulfate-reducing prokaryotes in anaerobic paddy soil amended with rice straw
    • He JZ, Liu XZ, Zheng Y, Shen JP, Zhang LM (2010) Dynamics of sulfate reduction and sulfate-reducing prokaryotes in anaerobic paddy soil amended with rice straw. Biol Fertil Soils 46: 283-291.
    • (2010) Biol Fertil Soils , vol.46 , pp. 283-291
    • He, J.Z.1    Liu, X.Z.2    Zheng, Y.3    Shen, J.P.4    Zhang, L.M.5
  • 15
    • 33746043354 scopus 로고    scopus 로고
    • Organic anion exudation by lowland rice (Oryza sativa L.) at zinc and phosphorus deficiency
    • Hoffland E, Wei CZ, Wissuwa M (2006) Organic anion exudation by lowland rice (Oryza sativa L.) at zinc and phosphorus deficiency. Plant Soil 283: 155-162.
    • (2006) Plant Soil , vol.283 , pp. 155-162
    • Hoffland, E.1    Wei, C.Z.2    Wissuwa, M.3
  • 18
    • 39649115096 scopus 로고
    • Effect of pyruvate on the redox behavior of the iron (III)-(II) couple
    • Kim JJ, Cummings TE, Cox JA (1972) Effect of pyruvate on the redox behavior of the iron (III)-(II) couple. Anal Lett 5: 703-715.
    • (1972) Anal Lett , vol.5 , pp. 703-715
    • Kim, J.J.1    Cummings, T.E.2    Cox, J.A.3
  • 20
    • 0036951923 scopus 로고    scopus 로고
    • Growth of iron(III)-reducing bacteria on clay minerals as the sole electron acceptor and comparison of growth yields on a variety of oxidized iron forms
    • Kostka JE, Dalton DD, Skelton H, Dollhopf S, Stucki JW (2002) Growth of iron(III)-reducing bacteria on clay minerals as the sole electron acceptor and comparison of growth yields on a variety of oxidized iron forms. Appl Environ Microbiol 68: 6256-6262.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6256-6262
    • Kostka, J.E.1    Dalton, D.D.2    Skelton, H.3    Dollhopf, S.4    Stucki, J.W.5
  • 22
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (Eds.), New York: Wiley
    • Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 23
    • 34447335642 scopus 로고    scopus 로고
    • Phylogenetic and physiological diversity of dissimilatory ferric iron reducers in sediments of the polluted Scheldt estuary, Northwest Europe
    • Lin B, Hyacinthe C, Bonneville S, Braster M, van Cappellen P, Roling WFM (2007) Phylogenetic and physiological diversity of dissimilatory ferric iron reducers in sediments of the polluted Scheldt estuary, Northwest Europe. Environ Microbiol 9: 1956-1968.
    • (2007) Environ Microbiol , vol.9 , pp. 1956-1968
    • Lin, B.1    Hyacinthe, C.2    Bonneville, S.3    Braster, M.4    van Cappellen, P.5    Roling, W.F.M.6
  • 24
    • 77956852564 scopus 로고
    • Microbial reduction of iron, manganese, and other metals
    • Lovley DR (1995) Microbial reduction of iron, manganese, and other metals. Adv Agron 54: 175-231.
    • (1995) Adv Agron , vol.54 , pp. 175-231
    • Lovley, D.R.1
  • 26
    • 0024191542 scopus 로고
    • Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese
    • Lovley DR, Phillips EJP (1988) Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54: 1472-1480.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 1472-1480
    • Lovley, D.R.1    Phillips, E.J.P.2
  • 27
    • 0028469073 scopus 로고
    • Stimulated anoxic biodegradation of aromatic-hydrocarbons using Fe(III) ligands
    • Lovley DR, Woodward JC, Chapelle FH (1994) Stimulated anoxic biodegradation of aromatic-hydrocarbons using Fe(III) ligands. Nature 370: 128-131.
    • (1994) Nature , vol.370 , pp. 128-131
    • Lovley, D.R.1    Woodward, J.C.2    Chapelle, F.H.3
  • 30
    • 0035717337 scopus 로고    scopus 로고
    • A novel electrochemically active and Fe(III)-reducing bacterium phylogenetically related to Clostridium butyricum isolated from a microbial fuel cell
    • Park HS, Kim BH, Kim HS, Kim HJ, Kim GT, Kim M, Chang IS, Park YK, Chang HI (2001) A novel electrochemically active and Fe(III)-reducing bacterium phylogenetically related to Clostridium butyricum isolated from a microbial fuel cell. Anaerobe 7: 297-306.
    • (2001) Anaerobe , vol.7 , pp. 297-306
    • Park, H.S.1    Kim, B.H.2    Kim, H.S.3    Kim, H.J.4    Kim, G.T.5    Kim, M.6    Chang, I.S.7    Park, Y.K.8    Chang, H.I.9
  • 31
    • 36348936731 scopus 로고    scopus 로고
    • Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp isolated from salt flat sediments of Soap Lake
    • Pollock J, Weber KA, Lack J, Achenbach LA, Mormile MR, Coates JD (2007) Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp isolated from salt flat sediments of Soap Lake. Appl Microbiol Biotechnol 77: 927-934.
    • (2007) Appl Microbiol Biotechnol , vol.77 , pp. 927-934
    • Pollock, J.1    Weber, K.A.2    Lack, J.3    Achenbach, L.A.4    Mormile, M.R.5    Coates, J.D.6
  • 32
    • 19044398153 scopus 로고    scopus 로고
    • Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost
    • Rhee SK, Jeon CO, Bae JW et al (2002) Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost. Extremophiles 6: 57-64.
    • (2002) Extremophiles , vol.6 , pp. 57-64
    • Rhee, S.K.1    Jeon, C.O.2    Bae, J.W.3
  • 33
    • 67650494989 scopus 로고    scopus 로고
    • Succession of bacterial populations during plant residue decomposition in rice field soil
    • Rui JP, Peng JJ, Lu YH (2009) Succession of bacterial populations during plant residue decomposition in rice field soil. Appl Environ Microbiol 75: 4879-4886.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4879-4886
    • Rui, J.P.1    Peng, J.J.2    Lu, Y.H.3
  • 34
    • 33748461216 scopus 로고    scopus 로고
    • Characterization of Fe(III)-reducing enrichment cultures and isolation of Fe(III)-reducing bacteria from the Savannah River site, South Carolina
    • Scala DJ, Hacherl EL, Cowan R, Young LY, Kosson DS (2006) Characterization of Fe(III)-reducing enrichment cultures and isolation of Fe(III)-reducing bacteria from the Savannah River site, South Carolina. Res Microbiol 157: 772-783.
    • (2006) Res Microbiol , vol.157 , pp. 772-783
    • Scala, D.J.1    Hacherl, E.L.2    Cowan, R.3    Young, L.Y.4    Kosson, D.S.5
  • 36
    • 34247633477 scopus 로고    scopus 로고
    • An efficient method to obtain axenic cultures of Alexandrium tamarense-a PSP-producing dinoflagellate
    • Su JQ, Yang XR, Zheng TL, Hong HS (2007) An efficient method to obtain axenic cultures of Alexandrium tamarense-a PSP-producing dinoflagellate. J Microbiol Meth 69: 425-430.
    • (2007) J Microbiol Meth , vol.69 , pp. 425-430
    • Su, J.Q.1    Yang, X.R.2    Zheng, T.L.3    Hong, H.S.4
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 77954316230 scopus 로고    scopus 로고
    • Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China
    • Wang XJ, Yang J, Chen XP, Sun GX, Zhu YG (2009) Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China. J Soils Sediments 9: 568-577.
    • (2009) J Soils Sediments , vol.9 , pp. 568-577
    • Wang, X.J.1    Yang, J.2    Chen, X.P.3    Sun, G.X.4    Zhu, Y.G.5
  • 40
    • 0035870183 scopus 로고    scopus 로고
    • Microbially catalyzed nitrate-dependent oxidation of biogenic solid-phase Fe(II) compounds
    • Weber KA, Picardal FW, Roden EE (2001) Microbially catalyzed nitrate-dependent oxidation of biogenic solid-phase Fe(II) compounds. Environ Sci Technol 35: 1644-1650.
    • (2001) Environ Sci Technol , vol.35 , pp. 1644-1650
    • Weber, K.A.1    Picardal, F.W.2    Roden, E.E.3
  • 41
    • 0035112021 scopus 로고    scopus 로고
    • Thermodynamics of propionate degradation in anoxic paddy soil from different rice-growing regions
    • Yao H, Conrad R (2001) Thermodynamics of propionate degradation in anoxic paddy soil from different rice-growing regions. Soil Biol Biochem 33: 359-364.
    • (2001) Soil Biol Biochem , vol.33 , pp. 359-364
    • Yao, H.1    Conrad, R.2
  • 42
    • 4644362851 scopus 로고    scopus 로고
    • Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium
    • Ye Q, Roh Y, Carroll SL, Blair B, Zhou JZ, Zhang CL, Fields MW (2004) Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium. Appl Environ Microbiol 70: 5595-5602.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5595-5602
    • Ye, Q.1    Roh, Y.2    Carroll, S.L.3    Blair, B.4    Zhou, J.Z.5    Zhang, C.L.6    Fields, M.W.7
  • 43
    • 44649164358 scopus 로고    scopus 로고
    • Exposure to inorganic arsenic from rice: a global health issue?
    • Zhu YG, Williams PN, Meharg AA (2008) Exposure to inorganic arsenic from rice: a global health issue? Environ Pollut 154: 169-171.
    • (2008) Environ Pollut , vol.154 , pp. 169-171
    • Zhu, Y.G.1    Williams, P.N.2    Meharg, A.A.3


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