-
1
-
-
78649918717
-
Detecting highways ofhorizontal gene transfer
-
Bansal, M.S., Gogarten, J.P., and Shamir, R. 2010. Detecting highways ofhorizontal gene transfer. Lect. Notes Comput. Sci. 6398, 109-120.
-
(2010)
Lect. Notes Comput. Sci.
, vol.6398
, pp. 109-120
-
-
Bansal, M.S.1
Gogarten, J.P.2
Shamir, R.3
-
2
-
-
26444506791
-
Highways of gene sharing in prokaryotes
-
DOI 10.1073/pnas.0504068102
-
Beiko, R.G., Harlow, T.J., and Ragan, M.A. 2005. Highways of gene sharing in prokaryotes. Proc. Natl. Acad. Sci. USA 102, 14332-14337. (Pubitemid 41429698)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.40
, pp. 14332-14337
-
-
Beiko, R.G.1
Harlow, T.J.2
Ragan, M.A.3
-
4
-
-
35248900589
-
New efficient algorithm for detection ofhorizontal gene transfer events
-
Boc, A., and Makarenkov, V. 2003. New efficient algorithm for detection ofhorizontal gene transfer events. Lect. Notes Comp. Sci. 2812, 190-201.
-
(2003)
Lect. Notes Comp. Sci.
, vol.2812
, pp. 190-201
-
-
Boc, A.1
Makarenkov, V.2
-
5
-
-
77649259858
-
Inferring and validating horizontal gene transfer events using bipartition dissimilarity
-
Boc, A., Philippe, H., and Makarenkov, V. 2010. Inferring and validating horizontal gene transfer events using bipartition dissimilarity. System. Biol. 59, 195-211.
-
(2010)
System. Biol.
, vol.59
, pp. 195-211
-
-
Boc, A.1
Philippe, H.2
Makarenkov, V.3
-
6
-
-
13844266486
-
On the computational complexity of the rooted subtree prune and regraft distance
-
DOI 10.1007/s00026-004-0229-z
-
Bordewich, M., and Semple, C. 2005. On the computational complexity of the rooted subtree prune and regraft distance. Ann. Combin. 8, 409-423. (Pubitemid 40251118)
-
(2005)
Annals of Combinatorics
, vol.8
, Issue.4
, pp. 409-423
-
-
Bordewich, M.1
Semple, C.2
-
7
-
-
77954993696
-
Rooting the ribosomal tree of life
-
Fournier, G.P., and Gogarten, J.P. 2010. Rooting the ribosomal tree of life. Mol. Biol. Evol. 27, 1792-1801.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1792-1801
-
-
Fournier, G.P.1
Gogarten, J.P.2
-
8
-
-
0027737969
-
Origin and evolution of organelle genomes
-
Gary, M.W. 1993. Origin and evolution of organelle genomes. Curr. Opin. Genet. Dev. 3, 884-890.
-
(1993)
Curr. Opin. Genet. Dev.
, vol.3
, pp. 884-890
-
-
Gary, M.W.1
-
9
-
-
0021003190
-
Evolution of antibiotic resistance genes: The DNA sequence of a kanamycin resistance gene from Staphylococcus aureus
-
Gray, G., and Fitch, W. 1983. Evolution of antibiotic resistance genes: the DNA sequence of a kanamycin resistance gene from Staphylococcus aureus. Mol. Biol. Evol. 1, 57-66. (Pubitemid 15177340)
-
(1983)
Molecular Biology and Evolution
, vol.1
, Issue.1
, pp. 57-66
-
-
Gray, G.S.1
Fitch, W.M.2
-
11
-
-
77953743320
-
Sampling trees from evolutionary models
-
Hartmann, K., Wong, D., and Stadler, T. 2010. Sampling trees from evolutionary models. System. Biol. 59, 465-476.
-
(2010)
System. Biol.
, vol.59
, pp. 465-476
-
-
Hartmann, K.1
Wong, D.2
Stadler, T.3
-
12
-
-
0025299784
-
Reconstructing evolution of sequences subject to recombination using parsimony
-
DOI 10.1016/0025-5564(90)90123-G
-
Hein, J. 1990. Reconstructing evolution of sequences subject to recombination using parsimony. Math. Biosci. 98, 185-200. (Pubitemid 20171457)
-
(1990)
Mathematical Biosciences
, vol.98
, Issue.2
, pp. 185-200
-
-
Hein, J.1
-
13
-
-
41049096780
-
SPR distance computation for unrooted trees
-
Hickey, G., Dehne, F., Rau-Chaplin, A., et al. 2008. SPR distance computation for unrooted trees. Evol. Bioinform. 4, 17-27. (Pubitemid 351419609)
-
(2008)
Evolutionary Bioinformatics
, vol.2008
, Issue.4
, pp. 17-27
-
-
Hickey, G.1
Dehne, F.2
Rau-Chaplin, A.3
Blouin, C.4
-
14
-
-
77649210699
-
Sprit: Identifying horizontal gene transfer in rooted phylogenetic trees
-
Hill, T., Nordstrom, K., Thollesson, M., et al. 2010. Sprit: identifying horizontal gene transfer in rooted phylogenetic trees. BMC Evol. Biol. 10, 42.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 42
-
-
Hill, T.1
Nordstrom, K.2
Thollesson, M.3
-
15
-
-
39549122214
-
Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
-
Huang, J., and Gogarten, J. 2007. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 8, R99.
-
(2007)
Genome Biol.
, vol.8
-
-
Huang, J.1
Gogarten, J.2
-
16
-
-
68649084421
-
Parsimony score of phylogenetic networks: Hardness results and a linear-time heuristic
-
Jin, G., Nakhleh, L., Snir, S., et al. 2009. Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic. IEEE/ACM Trans. Comput. Biol. Bioinform. 6, 495-505.
-
(2009)
IEEE/ACM Trans. Comput. Biol. Bioinform.
, vol.6
, pp. 495-505
-
-
Jin, G.1
Nakhleh, L.2
Snir, S.3
-
17
-
-
69149098846
-
Evidence for an early prokaryotic endosymbiosis
-
Lake, JA. 2009. Evidence for an early prokaryotic endosymbiosis. Nature 460, 967-971.
-
(2009)
Nature
, vol.460
, pp. 967-971
-
-
Lake, J.A.1
-
19
-
-
2442436724
-
Reconstructing reticulate evolution in species: Theory and practice
-
Nakhleh, L., Warnow, T., and Linder, C.R. 2004. Reconstructing reticulate evolution in species: theory and practice. Proc. RECOMB 337-346.
-
(2004)
Proc. RECOMB
, pp. 337-346
-
-
Nakhleh, L.1
Warnow, T.2
Linder, C.R.3
-
20
-
-
26844458739
-
RIATA-HGT: A fast and accurate heuristic for reconstructing horizontal gene transfer
-
Computing and Combinatorics: 11th Annual International Conference, COCOON 2005. Proceedings
-
Nakhleh, L., Ruths, D.A., and Wang, L.-S. 2005. RIATA-HGT: a fast and accurate heuristic for reconstructing horizontal gene transfer. Lect. Notes Comput. Sci. 3595, 84-93. (Pubitemid 41450189)
-
(2005)
Lecture Notes in Computer Science
, vol.3595
, pp. 84-93
-
-
Nakhleh, L.1
Ruths, D.2
Wang, L.-S.3
-
21
-
-
2042438782
-
Inheritance of drug resistance (and its transfer) between Shigella strains and between Shigella and E. coli strains [in Japanese]
-
Ochiai, K., Yamanaka, T., Kimura, K., et al. 1959. Inheritance of drug resistance (and its transfer) between Shigella strains and between Shigella and E. coli strains [in Japanese]. Hihon Iji Shimpor 1861, 34-46.
-
(1959)
Hihon Iji Shimpor
, vol.1861
, pp. 34-46
-
-
Ochiai, K.1
Yamanaka, T.2
Kimura, K.3
-
22
-
-
2442531708
-
Quartet supertrees
-
Springer, New York
-
Piaggio-Talice, R., Burleigh, G., and Eulenstein, O. 2004. Quartet supertrees; 173-192. In: Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life. Springer, New York.
-
(2004)
Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life
, pp. 173-192
-
-
Piaggio-Talice, R.1
Burleigh, G.2
Eulenstein, O.3
-
23
-
-
20544436001
-
The prokaryote-eukaryote dichotomy: Meanings and mythology
-
DOI 10.1128/MMBR.69.2.292-305.2005
-
Sapp, J. 2005. The prokaryote-eukaryote dichotomy: meanings and mythology. Microbiol. Mol. Biol. Rev. 69, 292-305. (Pubitemid 40847941)
-
(2005)
Microbiology and Molecular Biology Reviews
, vol.69
, Issue.2
, pp. 292-305
-
-
Sapp, J.1
-
24
-
-
19944415093
-
The global organism: A new view of bacteria
-
Sonea, S. 1988. The global organism: a new view of bacteria. The Sciences 28, 38-45.
-
(1988)
The Sciences
, vol.28
, pp. 38-45
-
-
Sonea, S.1
-
25
-
-
34250380386
-
Confounding factors in HGT detection: Statistical error, coalescent effects, and multiple solutions
-
DOI 10.1089/cmb.2007.A010
-
Than, C., Ruths, D.A., Innan, H., et al. 2007. Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions. J. Comput. Biol. 14, 517-535. (Pubitemid 46911222)
-
(2007)
Journal of Computational Biology
, vol.14
, Issue.4
, pp. 517-535
-
-
Than, C.1
Ruths, D.2
Innan, H.3
Nakhleh, L.4
-
26
-
-
0023184331
-
Bacterial evolution. Microbiol
-
Woese, C.R. 1987. Bacterial evolution. Microbiol. Mol. Biol. Rev. 51, 221-271.
-
(1987)
Mol. Biol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
29
-
-
33748277982
-
Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events
-
DOI 10.1101/gr.5322306
-
Zhaxybayeva, O., Gogarten, J.P., Charlebois, R.L., et al. 2006. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Res. 16, 1099-1108. (Pubitemid 44320397)
-
(2006)
Genome Research
, vol.16
, Issue.9
, pp. 1099-1108
-
-
Zhaxybayeva, O.1
Gogarten, J.P.2
Charlebois, R.L.3
Doolittle, W.F.4
Papke, R.T.5
-
30
-
-
77149147828
-
Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus
-
Zhaxybayeva, O., Doolittle, W.F., Papke, R.T., et al. 2009. Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus. Genome Biol. Evol. 1, 325-339.
-
(2009)
Genome Biol. Evol.
, vol.1
, pp. 325-339
-
-
Zhaxybayeva, O.1
Doolittle, W.F.2
Papke, R.T.3
|