Draft genome sequence of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete

Journal of Bacteriology

Volumn 193, Issue 18, 2011, Pages 5045-5046

  Ge, Fanglan ^a   Li, Wei ^a   Chen, Guiying ^a   Liu, Yuchang ^a   Zhang, Guangxiang ^a   Yong, Bin ^a   Wang, Qiong ^a   Wang, Nan ^a   Huang, Zhumei ^a   Li, Weitian ^a   Wang, Jing ^a   Wu, Cheng ^a   Xie, Qian ^a   Liu, Gang ^a  

^a SICHUAN NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHOLESTEROL;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CHOLESTEROL DEGRADATION; FECES; FELIDAE; GENBANK; GENE CLUSTER; GENE SEQUENCE; GORDONIA; GORDONIA NEOFELIFAECIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION;

ACTINOMYCETALES; ANIMALS; CHOLESTEROL; DNA, BACTERIAL; FECES; FELIDAE; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

GORDONIA (ACTINOMYCETE); GORDONIACEAE; NEOFELIS NEBULOSA;

EID: 80052536208     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05531-11     Document Type: Article

References (16)

1. Arenskötter, M.,D. Broker, and A. Steinbuchel. 2004. Biology of the metabolically diverse genus Gordonia. Appl. Environ. Microbiol. 70:3195-3204.
2. Chang, J. C., et al. 2009. igr genes and Mycobacterium tuberculosis cholesterol metabolism. J. Bacteriol. 191:5232-5239.
3. Delcher, A. L., K. A. Bratke, E. C. Powers, and S. L. Salzberg. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
4. Drzyzga, O., L. J. Navarro, L. H. L. Fernández, F. E. García, and J. Perera. 2009. Gordonia cholesterolivorans sp. nov., a cholesterol-degrading actinomycete isolated from sewage sludge. Int. J. Syst. Evol. Microbiol. 59:1011-1015.
5. Ivanova, N., et al. 2010. Complete genome sequence of Gordonia bronchialis type strain (3410T). Stand. Genomic Sci. 2:19-28.
6. Kageyama, A., et al. 2006. Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. Int. J. Syst. Evol. Microbiol. 56:1817-1821.
7. Kim, S. B., et al. 2000. Gordonia amicalis sp. nov., a novel dibenzothiophenedesulphurizing actinomycete. Int. J. Syst. Evol. Microbiol. 50:2031-2036.
8. Lagesen, K., et al. 2007. RNAmmer: consistent and rapid annotation of rRNA genes. Nucleic Acids Res. 35:3100-3108.
9. Linos, A., et al. 2002. Gordonia westfalica sp. nov., a novel rubber-degrading actinomycte. Int. J. Syst. Evol. Mircobiol. 52:1133-1139.
10. Liu, Y., et al. 2011. Efficient biotransformation of cholesterol to androsta-1,4-diene-3, 17-dione by a newly isolated actinomycete Gordonia neofelifaecis. World J. Microbiol. Biotechnol. 27:759-765.
11. Liu, Y. C., et al. 2011. Gordonia neofelifaecis sp. nov., a cholesterol side-chain cleaving actinomycete isolated from the faeces of Neofelis nebulosa. Int. J. Syst. Evol. Mircobiol. 61:165-169.
12. Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of tRNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
13. Stackebrandt, E., J. Smida, and M. D. Collins. 1988. Evidence of phylogenetic heterogeneity within the genus Rhodococcus: revival of the genus Gordona (Tsukamura). J. Gen. Appl. Microbiol. 34:341-348.
14. Thompson, K. T., F. H. Crocker, and H. L. Fredrickson. 2005. Mineralization of the cyclic nitramine explosive hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia and Williamsia spp. Appl. Environ. Microbiol. 71:8265-8272.
15. Tsukamura, M. 1971. Proposal of a new genus, Gordona, for slightly acidfast organisms occurring in sputa of patients with pulmonary disease and in soil. J. Gen. Microbiol. 68:15-26.
16. Van der Geize, R., et al. 2007. A gene cluster encoding cholesterol catabolism in a soil actinomycete provides insight into Mycobacterium tuberculosis survival in macrophages. Proc. Natl. Acad. Sci. U. S. A. 104:1947-1952.