Preparation of antiserum to Apple stem pitting virus using in silico prediction of antigenic epitopes

Journal of Phytopathology

Volumn 159, Issue 10, 2011, Pages 676-681

  Li, Lili ^a,b   Yang, Hongyi ^a  

^a NORTHEAST FORESTRY UNIVERSITY   (China)

^b SHENYANG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Antiserum; Apple stem pitting virus; Enzyme linked immunosorbent assay; Epitope; Synthetic peptides

Indexed keywords

ALGORITHM; AMINO ACID; ANTIBODY; ANTIGEN; COLIFORM BACTERIUM; FRUIT; GENE EXPRESSION; IMMUNOASSAY; PEPTIDE; PROBABILITY; PROTEIN; SOFTWARE;

APPLE STEM PITTING VIRUS; ESCHERICHIA COLI; MALUS X DOMESTICA; ORYCTOLAGUS CUNICULUS;

EID: 80052450251     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/j.1439-0434.2011.01825.x     Document Type: Article

References (24)

1. Denisova GF, Denisov DA, Yeung J, Loeb MB, Diamond MS, Bramson JL. (2008) A novel computer algorithm improves antibody epitope prediction using affinity-selected mimotopes: a case study using monoclonal antibodies against the West Nile virus E protein. Mol Immunol 46:125-134.
2. Edwards ML, Cooper JI. (1985) Plant virus detection using a new form of indirect ELISA. J Virol Methods 11:309-319.
3. Gugerli P, Ramel ME. (2004) Production of monoclonal antibodies for the serological identification and reliable detection of apple stem pitting and pear yellow vein viruses in apple and pear. Acta Hort 657:59-69.
4. He X, Liu S, Perry KL. (1998) Identification of epitopes in cucumber mosaic virus using a phage-displayed random peptide library. J Gen Virol 79:3145-3153.
5. Holzem A, Nahring JM, Fischer R. (2001) Rapid identification of a tobacco mosaic virus epitope by using a coat protein gene-fragment-pVIII fusion library. J Gen Virol 82:9-15.
6. Hull R. (2002) Matthews' Plant Virology, 4th edn. San Diego, USA, Academic Press.
7. Jelkmann W. (1994) Nucleotide sequences of apple stem pitting virus and of the coat protein gene of a similar virus from pear associated with vein yellows disease and their relationship with potex- and carlaviruses. J Gen Virol 75:1535-1542.
8. Keller H, Pomp R, Bakker J, Schots A. (2005) Epitope identification and in silico prediction of the specificity of antibodies binding to the coat proteins of Potato Virus Y strains. Eur J Plant Pathol 111:391-397.
9. Koganezawa H, Yanase H. (1990) A new type of elongated virus isolated form apple trees containing the stem pitting agent. Plant Dis 74:610-614.
10. Kundu JK. (2003) The occurrence of Apple stem pitting virus and Apple stem grooving virus within field-grown apple cultivars evaluated by RT-PCR. Plant Prot Sci 39:88-92.
11. Li LL, Dong YF, Zhang ZP, Zhang ZH, Fan XD, Pei GQ. (2010) RT-PCR detection and molecular variability of Apple stem pitting virus. Acta Hort Sin 37:9-16.
12. Menendez-Arias L, Rodriguez R. (1990) A BASIC microcomputer program for prediction of B and T cell epitopes in proteins. CABIOS 6:101-105.
13. Meng B, Credi R, Petrovic N, Tomazic I, Gonsalves D. (2003) Antiserum to recombinant virus coat protein detects Rupestris stem pitting associated virus in grapevine. Plant Dis 87:515-522.
14. Muller S, Plaue S. (1988) Synthetic Polypeptides as Antigens. Amsterdam, Netherlands, Elsevier.
15. Murashige T, Skoog F. (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15:473-497.
16. Neimark J, Briand JP. (1993) Development of a fully automated multichannel peptide synthesizer with an integrated TFA clevage capability. Pept Res 6:219-228.
17. Nikolaeva OV, Karasev AV, Powell CA, Gumpf DJ, Garnsey SM, Lee RF. (1996) Mapping of epitopes for citrus tristeza virus-specific monoclonal antibodies using bacterially expressed coat protein fragments. Phytopathology 86:974-979.
18. Paunovic S, Jevremovic D. (2006) Comparative results of detection of pome fruit viruses by different methods. Acta Hort 781:147-154.
19. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.
20. Tian HJ, Xiao Y, Zhu M, Chen YH. (2001) HIV epitope-peptides in aluminum adjuvant induced high levels of epitope-specific antibodies. Int Immunopharmacol 4:763-768.
21. Urmila K, Ojha J, Manjari GS, Deobagkar DD, Mallya AD, Dhere RM, Kapre SV. (2007) Mapping antigenic diversity and strain specificity of mumps virus: a bioinformatics approach. Virology 359:436-446.
22. Wu J, Li W, Lei H, Sun T. (1994) Goldkey: a software for analysis of nucleotide and protein. Lett Biotechnol 5:189-193.
23. Yoshikawa N, Matsuda H, Oda Y. (2001) Genome heterogeneity of Apple stem pitting virus in apple trees. Acta Hort 550:285-290.
24. Zhou YJ, An TQ, He YX, Liu JX, Qiu HJ, Wang YF, Tong GZ. (2006) Antigenic structure analysis of glycosylated protein 3 of porcine reproductive and respiratory syndrome virus. Virus Res 118:98-104.