The complete mitochondrial genome of Spilonota lechriaspis Meyrick (Lepidoptera: Tortricidae)

Molecular Biology Reports

Volumn 38, Issue 6, 2011, Pages 3757-3764

  Zhao, Jin Liang ^a,b   Zhang, Yan Yan ^a   Luo, A Rong ^b   Jiang, Guo Fang ^a   Cameron, Stephen L ^c   Zhu, Chao Dong ^b  

^a NANJING NORMAL UNIVERSITY   (China)

^b INSTITUTE OF ZOOLOGY   (China)

^c CSIRO   (Australia)

Author keywords

Lepidoptera; Mitochondrial genome; Spilonota lechriaspis Meyrick; Tortricidae

Indexed keywords

TRANSFER RNA;

ARTICLE; CONTROLLED STUDY; DNA BASE COMPOSITION; GENETIC COMPLEMENTATION; GENETIC CONSERVATION; LEPIDOPTERA; MICROSATELLITE MARKER; MITOCHONDRIAL GENOME; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; RNA SEQUENCE; SEQUENCE HOMOLOGY; SPILONOTA LECHRIASPIS; START CODON; STOP CODON;

ANIMALS; BASE COMPOSITION; BASE SEQUENCE; CODON; DNA, INTERGENIC; ELECTRON TRANSPORT COMPLEX IV; GENOME, MITOCHONDRIAL; LEPIDOPTERA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; RNA, RIBOSOMAL; RNA, TRANSFER; SPECIES SPECIFICITY; TANDEM REPEAT SEQUENCES;

LEPIDOPTERA; SPILONOTA; TORTRICIDAE;

EID: 80052442439     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0491-6     Document Type: Article

References (46)

1. Fenn JD, Song H, Cameron SL, Whiting MF (2008) A mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data. Mol Phylogenet Evol 49:59-68.
2. Dowton M, Cameron SL, Austin AD, Whiting MF (2009) Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera-a lineage with both rapidly and slowly evolving mitochondrial genomes. Mol Phylogenet Evol 52:512-519.
3. Cameron SL, Sullivan J, Song H, Miller KB, Whiting MF (2009) A mitochondrial genome phylogeny of the Neuropterida (lacewings, alderflies and snakeflies) and their relationship to the other holometabolous insect orders. Zool Scr 38:575-590.
4. Sheffield NC, Song H, Cameron SL, Whiting MF (2009) Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. Syst Biol 58:381-394.
5. Song H, Sheffield NC, Cameron SL, Miller KB, Whiting MF (2010) What happens when the phylogenetic assumptions are violated?: the effect of base compositional heterogeneity and among-site rate heterogeneity in beetle mitochondrial phylogenomics. Syst Entomol 35:429-448.
6. Covacin C, Shao R, Cameron SL, Barker SC (2006) Extraordinary amounts of gene rearrangement in the mitochondrial genomes of lice (Insecta: Phthiraptera). Insect Mol Biol 15:63-68.
7. Cameron SL, Johnson KP, Whiting MF (2007) The mitochondrial genome of the screamer louse Bothriometopus (Phthiraptera: Ischnocera): effects of extensive gene rearrangements on the evolution of the genome as a whole. J Mol Evol 65:589-604. (Pubitemid 350115440)
8. Sheffield NC, Song H, Cameron SL, Whiting MF (2008) A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles. Mol Biol Evol 25:2499-2509.
9. Dowton M, Cameron SL, Dowavic JI, Austin AD, Whiting MF (2009) Characterization of 66 mitochondrial gene rearrangements in the Hymenoptera reveal underlying trends in mitochondrial genome evolution. Mol Biol Evol 26:1607-1617.
10. Wolstenholme DR, Clary DO (1985) Sequence evolution of Drosophila mitochondrial DNA. Genetics 109:725-744. (Pubitemid 15148564)
11. Lee ES, Shin KS, Kim MS, Park H, Cho S, Kim CB (2006) The mitochondrial genome of the smaller tea tortrix Adoxophyes honmai (Lepidoptera: Tortricidae). Gene 373:52-57.
12. Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27:1767-1780. (Pubitemid 29209617)
13. Taanman JW (1999) The mitochondrial genome: structure, transcription, translation and replication. Biochim Biophys Acta 1410:103-123.
14. Hu J, Zhang DX, Hao JS, Huang DY, Cameron S, Zhu CD (2009) The complete mitochondrial genome of the yellow coaster, Acraea issoria (Lepidoptera: Nymphalidae: Heliconiinae: Acraeini): sequence, gene organization and a unique tRNA translocation event. Mol Biol Rep. doi:10.1007/s11033-009-9934-3.
15. Horak M, Brown RL (1991) Tortricid pests, their biology, natural enemies and control. Elsevier, Amsterdam, pp 23-48.
16. Roelofs WL, Brown RL (1982) Pheromones and evolutionary relationships of Tortricidae. Annu Rev Ecol Syst 13:396-422.
17. Liu YQ, Li GW (2002) Fauna sinica, insect vol.27, Lepidoptera, Tortricidae. Science Press, Beijing, pp 315-316.
18. Park KT, Cheo KY, Paik JC, Han SC (1977) Lepidopterous insect pest on apple tree. Korean J Plant Prot 16(1):33-39.
19. Simon C, Frati F, Bekenbach A, Crespi B, Liu H, Flook P (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chainreaction primers. Ann Entomol Soc Am 87:651-701.
20. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
21. Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964. (Pubitemid 27298263)
22. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599. (Pubitemid 47236692)
23. Crozier RH, Crozier YC (1993) The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics 133:97-117. (Pubitemid 23011400)
24. Dotson EM, Beard CB (2001) Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata. Insect Mol Biol 10(3):205-215. (Pubitemid 32602225)
25. Fenn JD, Cameron SL, Whiting MF (2007) The complete mitochondrial genome of the mormon cricket (Anabrus simplex: Tettigoniidae: Orthoptera) and an analysis of control region variability. Insect Mol Biol 16:239-252. (Pubitemid 46376346)
26. Caterino MS, Sperling FA (1999) Papilio phylogeny based on mitochondrial cytochrome oxidase I and II genes. Mol Phylogenet Evol 11:122-137. (Pubitemid 129499257)
27. Yukuhiro K, Sezutsu H, Itoh M, Shimizu K, Banno Y (2002) Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silkmoth, Bombyx mandarina, and its close relative, the domesticated silkmoth, Bombyx mori. Mol Biol Evol 19: 1385-1389.
28. Pan MH, Yu QY, Xia YL, Dai FY, Liu YQ, Lu C, Zhang Z, Xiang ZH (2008) Characterization of mitochondrial genome of Chinese wild mulberry silkworm, Bombyx mandarina (Lepidoptera: Bombycidae). Sci China Ser C 51(8):693-701.
29. Kim I, Lee EM, Seol KY, Yun EY, Lee YB, Hwang JS, Jin BR (2006) The mitochondrial genome of the Korean hairstreak, Coreana raphaelis (Lepidoptera: Lycaenidae). Insect Mol Biol 15:217-225.
30. Liu YQ, Li YP, Pan MH, Dai FY, Zhu XW, Lu C, Xiang ZH (2008) The complete mitochondrial genome of the Chinese oak silkmoth, Antheraea pernyi (Lepidoptera: Saturniidae). Acta Biochim Biophys Sin (Shanghai) 40(8):693-703.
31. Kim SR, Kim MI, Hong MY, Kim KY, Kang PD, Hwang JS, Han YS, Jin BR, Kim I (2009) The complete mitogenome sequence of the Japanese oak silkmoth, Antheraea yamamai (Lepidoptera: Saturniidae). Mol Biol Rep 36(7):1871-1880.
32. Frohlich DR, Stevenson BA, Peterson AM, Wells MA (1996) Mitochondrial cytochrome C oxidase subunit I of Manduca sexta and a comparison with other invertebrate genes. Comp Biochem Physiol B 113B:785-788. (Pubitemid 26186397)
33. Yang L, Wei ZJ, Hong GY, Jiang ST, Wen LP (2009) The complete nucleotide sequence of the mitochondrial genome of Phthonandria atrilineata (Lepidoptera: Geometridae). Mol Biol Rep 36:1441-1449.
34. Cameron SL, Whiting MF (2008) The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths. Gene 408:112-123.
35. Salvato P, Simonato M, Battisti A, Negrisolo E (2008) The complete mitochondrial genome of the bag-shelter moth Ochrogaster lunifer (Lepidoptera, Notodontidae). BMC Genomics 9:331.
36. Hong G, Jiang ST, Yu M, Yang Y, Li F, Xue F, Wei ZJ (2009) The complete nucleotide sequence of the mitochondrial genome of the cabbage butterfly, Artogeia melete (Lepidoptera: Pieridae). Acta Biochim Biophys Sin 41(6):446-455.
37. Jiang ST, Hong GY, Yu M, Li N, Yang Y, Liu YQ, Wei ZJ (2009) Characterization of the complete mitochondrial genome of the giant silkworm moth, Eriogyna pyretorum (Lepidoptera: Saturniidae). Int J Biol Sci 5(4):351-365.
38. Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470-474. (Pubitemid 11159076)
39. Lavrov DV, Brown WM, Boore JL (2000) A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus. Proc Natl Acad Sci USA 97:13738-13742.
40. Hong MY, Lee EM, Jo YH, Park HC, Kim SR, Hwang JS, Jin BR, Kang PD, Kim KG, Han YS, Kim I (2008) Complete nucleotide sequence and organization of the mitogenome of the silk moth Caligula boisduvalii (Lepidoptera: Saturniidae) and comparison with other lepidopteran insects. Gene 413(1-2): 49-57.
41. Coates BS, Sumerford DV, Hellmich RL, Lewis LC (2005) Partial mitochondrial genome sequence of Ostrinia nubilalis and Ostrinia furnicalis. Int J Biol Sci 1:13-18.
42. Sheffield NC, Song H, Cameron SL, Whiting MF (2008) A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles. Mol Biol Evol 25(11):2499-2509.
43. Wei SJ, Tang P, Zheng LH, Shi M, Chen XX (2010) The complete mitochondrial genome of Evania appendigaster (Hymenoptera: Evaniidae) has low A + T content and a long intergenic spacer between atp8 and atp6. Mol Biol Rep 37:1931-1942.
44. Clayton DA (1992) Transcription and replication of animal mitochondrial DNA. Int Rev Cyt 141:217-232. (Pubitemid 23072889)
45. Cameron SL, Whiting MF (2007) Mitochondrial genomic comparisons of the subterranean termites from the Genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae). Genome 50:188-202. (Pubitemid 46846422)
46. Cameron SL, Dowton M, Castro LR, Ruberu K, Whiting MF, Austin AD, Diement K, Stevens J (2008) The sequence of the mitochondrial genomes of two vespid wasps reveals a number of derived tRNA gene rearrangements. Genome 51:800-808.