The complete mitochondrial genome of the yellow coaster, Acraea issoria (Lepidoptera: Nymphalidae: Heliconiinae: Acraeini): Sequence, gene organization and a unique tRNA translocation event

Molecular Biology Reports

Volumn 37, Issue 7, 2010, Pages 3431-3438

  Hu, Jing ^a   Zhang, Daxiu ^a   Hao, Jiasheng ^a   Huang, Dunyuan ^b   Cameron, Stephen ^c   Zhu, Chaodong ^a,d  

^a ANHUI NORMAL UNIVERSITY   (China)

^b Jiangxi Environmental Engineering Vocational College   (China)

^c CSIRO   (Australia)

^d INSTITUTE OF ZOOLOGY   (China)

Author keywords

Acraea issoria; Heliconiinae; Lepidoptera; Mitochondrial genome; Nymphalidae

Indexed keywords

RIBOSOME RNA; TRANSFER RNA;

ACRAEA ISSORIA; ARTICLE; CODON USAGE; CONTROLLED STUDY; GENE DUPLICATION; GENE ORDER; GENE SEQUENCE; GENE STRUCTURE; GENOME ANALYSIS; LEPIDOPTERA; MITOCHONDRIAL GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN SECONDARY STRUCTURE; RNA TRANSPORT; STOP CODON; TAXONOMIC RANK;

ANIMALS; BASE SEQUENCE; DNA, INTERGENIC; DNA, MITOCHONDRIAL; GENE ORDER; GENES, INSECT; GENOME; GENOME, MITOCHONDRIAL; LEPIDOPTERA; MITOCHONDRIAL PROTEINS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PROTEIN TRANSPORT; RNA, RIBOSOMAL; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA;

ACRAEA; ACRAEINI; HELICONIINAE; HEXAPODA; ISSORIA; LEPIDOPTERA; NYMPHALIDAE; TRIFOLIUM;

EID: 77952226095     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-009-9934-3     Document Type: Article

References (41)

1. DR Wolstenholme 1992 Animal mitochondrial DNA: structure and evolution Int Rev Cyt 141 173 216 1:CAS:528:DyaK3sXkt1Wgs78%3D 10.1016/S0074-7696(08) 62066-5
2. JL Boore 1999 Animal mitochondrial genomes Nucleic Acids Res 27 1767 1780 1:CAS:528:DyaK1MXivVersbo%3D 10.1093/nar/27.8.1767 10101183 (Pubitemid 29209617)
3. JW Taanman 1999 The mitochondrial genome: structure, transcription, translation and replication Biochim Biophys Acta 1410 103 123 1:STN:280:DyaK1M7nslClsQ%3D%3D 10.1016/S0005-2728(98)00161-3 10076021 (Pubitemid 29078599)
4. MH Pan QY Yu YL Xia FY Dai YQ Liu C Lu Z Zhang ZH Xiang 2008 The organization of the Chinese Bombyx mandarina mitochondrial genome Science 8 751 759
5. JWO Ballard MC Whitlock 2004 The incomplete natural history of mitochondrial Mol Ecol 13 729 744 10.1046/j.1365-294X.2003.02063.x 15012752 (Pubitemid 38390584)
6. WM Brown M George AC Wilson 1979 Rapid evolution of animal mitochondrial DNA Proc Natl Acad Sci USA 76 1967 1971 1:CAS:528:DyaE1MXktVWmsb8%3D 10.1073/pnas.76.4.1967 109836 (Pubitemid 9207037)
7. Chou I (1998) Classification and Identification of Chinese butterflies. Henan Scientific and Technological Publishing House, Zhengzhou, pp 173-176
8. CM Penz D Peggie 2003 Phylogenetic relationships among Heliconiinae genera based on morphology (Lepidoptera: Nymphalidae) Syst Entomol 28 451 479 10.1046/j.1365-3113.2003.00221.x (Pubitemid 37347822)
9. AVL Freitas KS Brown 2004 Phylogeny of the Nymphalidae (Lepidoptera) Syst Biol 53 363 383 10.1080/10635150490445670 15503668 (Pubitemid 38946904)
10. KL Silva-Brandão N Wahlberg RB Francini AML Azeredo-Espin KS Brown Jr M Paluch DC Lees AVL Freitas 2008 Phylogenetic relationships of butterflies of the tribe Acraeini (Lepidoptera, Nymphalidae, Heliconiinae) and the evolution of host plant use Mol Phylogenet Evol 46 515 531 10.1016/j.ympev.2007.11.024 18191590
11. C Simon F Frati A Bekenbach B Crespi H Liu P Flook 1994 Evolution, weighting, and phylogenetic utility of mitochondrial genesequences and a compilation of conserved polymerase chain-reaction primers Ann Entomol Soc Am 87 651 701 1:CAS:528:DyaK2MXis1Wiu7g%3D
12. RB Simons SJ Weller 2001 Utility and evolution of cytochrome b in insects Mol Phylogenet Evol 20 196 210 10.1006/mpev.2001.0958 (Pubitemid 32745270)
13. MS Caterino FAH Sperling 1999 Papilio phylogeny based on mitochondrial cytochrome oxidase I and II genes Mol Phylogenet Evol 11 122 137 1:CAS:528:DyaK1MXhvVGgsrw%3D 10.1006/mpev.1998.0549 10082616 (Pubitemid 129499257)
14. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The clustal-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 24 4876 4882 1:CAS:528:DyaK1cXntFyntQ%3D%3D 10.1093/nar/25.24.4876 9396791 (Pubitemid 28022245)
15. TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acid Symp Ser 41 95 98 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
16. TM Lowe SR Eddy 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res 25 955 964 1:CAS:528:DyaK2sXhvVahtrk%3D 10.1093/nar/25.5.955 9023104 (Pubitemid 27298263)
17. S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163 1:CAS:528:DC%2BD2cXntFGqu7s%3D 10.1093/bib/5.2.150 15260895
18. I Kim EM Lee KY Seol EY Yun YB Lee JS Hwang BR Jin 2006 The mitochondrial genome of the Korean hairstreak, Coreana raphaelis (Lepidoptera: Lycaenidae) Insect Mol Biol 15 217 225 1:CAS:528:DC%2BD28XksVWlsL4%3D 10.1111/j.1365-2583. 2006.00630.x 16640732
19. JD Fenn SL Cameron MF Whiting 2007 The complete mitochondrial genome of the Mormon cricket (Anabrus simplex: Tettigoniidae: Orthoptera) and an analysis of control region variability Insect Mol Biol 16 239 252 1:CAS:528: DC%2BD2sXksVKltbs%3D 10.1111/j.1365-2583.2006.00721.x 17316330 (Pubitemid 46376346)
20. SL Cameron MF Whiting 2007 Mitochondrial genomic comparisons of the subterranean termites from the Genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae) Genome 50 188 202 1:CAS:528:DC%2BD2sXntlOgur0%3D 10.1139/G06-148 17546084 (Pubitemid 46846422)
21. SL Cameron KP Johnson MF Whiting 2007 The mitochondrial genome of the screamer louse Bothriometopus (Phthiraptera: Ischnocera): effects of extensive gene rearrangements on the evolution of the genome as a whole J Mol Evol 65 589 604 1:CAS:528:DC%2BD2sXhtlSlsLfO 10.1007/s00239-007-9042-8 17925995 (Pubitemid 350115440)
22. SL Cameron M Dowton LR Castro K Ruberu MF Whiting AD Austin K Diement J Stevens 2008 The sequence of the mitochondrial genomes of two vespid wasps reveals a number of derived tRNA gene rearrangements Genome 51 800 808 1:CAS:528:DC%2BD1cXht1aqsL3P 10.1139/G08-066 18923531
23. NT Perna TD Kocher 1995 Patterns of nueleotide composition at fourfold degenerate sites of animal mitochondrial genomes J Mol Evol 41 353 358 1:CAS:528:DyaK2MXnslWnt7g%3D 10.1007/BF01215182 7563121
24. MF Taylor SW McKechnie N Pierce M Kreitman 1993 The lepidopteran mitochondrial control region: structure and evolution Mol Biol Evol 10 1259 1272 1:CAS:528:DyaK2cXht1Knsrs%3D 8277854
25. SF Cameron MF Whiting 2008 The complete mitochondrial genome of the tobacco hornworm, Manduca sexta (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths Gene 408 112 123 1:CAS:528:DC%2BD1cXhvFygsQ%3D%3D 10.1016/j.gene.2007.10.023 18065166
26. ES Lee KS Shin MS Kim H Park S Cho CB Kim 2006 The mitochondrial genome of the smaller tea tortix Adoxophyes honmai (Lepidoptera: Tortricidae) Gene 373 52 57 1:CAS:528:DC%2BD28Xktlaqu7s%3D 10.1016/j.gene.2006.01.003 16488090
27. DO Clary DR Wolstenholme 1983 Genes for cytochrome c oxidase subunit I, URF2 and three tRNAs in Drosophila mitochondrial DNA Nucleic Acids Res 11 6859 6872 1:CAS:528:DyaL2cXmt1KjsQ%3D%3D 10.1093/nar/11.19.6859 6314262
28. MHL De Bruijn 1983 Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code Nature 304 234 241 10.1038/304234a0 6408489
29. BS Coates DV Sumerford RL Hellmich LC Lewis 2005 Partial mitochondrial genome sequences of Ostrinia nubilalis and Ostrinia furnicalis Int J Biol Sci 1 13 18 1:CAS:528:DC%2BD2MXjs1eltLs%3D 15951845
30. K Wilson V Cahill E Ballment J Benzie 2000 The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are Malacostracan crustaceans more closely related to insects than to Branchiopods Mol Biol Evol 17 6 863 874 1:CAS:528:DC%2BD3cXjvFygs74%3D 10833192
31. CD Beard SM Hamm FH Colllins 1993 The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with the mitochondrial sequences of other insect Insect Mol Biol 2 103 124 1:CAS:528:DyaK2cXitV2rsL8%3D 10.1111/j.1365-2583.1993.tb00131.x 9087549
32. SE Mitchell AF Cockburn JA Seawright 1993 The mitochondrial genome of Anopheles quadrimaculatus species A: complete nucleotide sequence and gene organization Genome 36 1058 1073 1:CAS:528:DyaK2cXmslKqtbc%3D 10.1139/g93-141 8112570
33. L Spanos G Koutroumbras M Kotsyfakis C Louis 2000 The mitochondrial genome of the Mediteranian fruit fly, Ceratitis capitata Insect Mol Biol 9 2 139 144 1:CAS:528:DC%2BD3cXjsF2htL8%3D 10.1046/j.1365-2583.2000.00165.x 10762421 (Pubitemid 30236611)
34. JS Bae I Kim HD Sohn BR Jin 2004 The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects Mol Phylogenet Evol 32 978 985 1:CAS:528: DC%2BD2cXmt1CntLg%3D 10.1016/j.ympev.2004.03.009 15288070 (Pubitemid 39033550)
35. MY Hong EM Lee YH Jo HC Park SR Kim JS Hwang BR Jin PD Kang K Kim YS Han I Kim 2008 Complete nucleotide sequence and organization of the mitogenome of the silk moth Caligula boisduvalii (Lepidoptera: Saturniidae) and comparison with other lepidopteran insects Gene 413 49 57 1:CAS:528:DC%2BD1cXkt1Oksr8%3D 10.1016/j.gene.2008.01.019 18337026
36. D Ojala J Montoya G Attardi 1981 tRNA punctuation model of RNA processing in human mitochondria Nature 290 470 474 1:CAS:528:DyaL3MXksFKmtLo%3D 10.1038/290470a0 7219536 (Pubitemid 11159076)
37. K Yukuhiro H Sezutsu M Itoh K Shimizu Y Banno 2002 Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silk moth, Bombyx mandarina, and its close relative, the domesticated silk moth, Bombyx mori Mol Biol Evol 19 1385 1389 1:CAS:528:DC%2BD38XmtF2rs70%3D 12140251
38. DV Lavrov WM Brown JL Boore 2000 A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus Proc Natl Acad Sci USA 97 13738 13742 1:CAS:528:DC%2BD3cXoslynsrk%3D 10.1073/pnas.250402997 11095730
39. ACM Junqueira AC Lessinger TT Torres FR da Silva AL Vettore P Arruda AMLA Espin 2004 The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae) Gene 339 7 15 1:CAS:528:DC%2BD2cXnsVKjtb8%3D 10.1016/j.gene.2004.06.031 15363841 (Pubitemid 39201123)
40. AC Lessinger AML Azeredo-Espin 2000 Evolution and structural organisation of mitochondrial DNA control region of myiasis-causing flies Med Vet Entomol 14 71 80 1:STN:280:DC%2BD3c3itFSltw%3D%3D 10.1046/j.1365-2915.2000.00209.x 10759315 (Pubitemid 30186112)
41. DA Clayton 1992 Transcription and replication of animal mitochondrial DNA Int Rev Cyt 141 217 232 1:CAS:528:DyaK3sXkt1Wgs7w%3D 10.1016/S0074-7696(08) 62067-7