-
1
-
-
77956277723
-
Open grid computing environments: Advanced gateway support activities
-
New York, NY, USA, ACM
-
Marlon Pierce, Suresh Marru, Raminder Singh, Archit Kulshrestha, and Karthik Muthuraman. Open grid computing environments: advanced gateway support activities. In Proceedings of the 2010 TeraGrid Conference, TG '10, pages 16:1{16:9, New York, NY, USA, 2010. ACM.
-
(2010)
Proceedings of the 2010 Teragrid Conference, TG '10
-
-
Pierce, M.1
Marru, S.2
Singh, R.3
Kulshrestha, A.4
Muthuraman, K.5
-
2
-
-
84886180326
-
Understanding Scientific Applications for Cloud Environments
-
Chapter 13, Rajkumar Buyya (Editor), James Broberg (Editor), Andrzej M. Goscinski (Editor) ISBN: 978-0-470-88799-8 Hardcover March
-
Understanding Scientific Applications for Cloud Environments, by Shantenu Jha, Daniel S. Katz, Andre Luckow, Andre Merzky, and Katerina Stamou, Chapter 13, Cloud Computing: Principles and Paradigms Rajkumar Buyya (Editor), James Broberg (Editor), Andrzej M. Goscinski (Editor) ISBN: 978-0-470-88799-8 Hardcover 664 pages March 2011.
-
(2011)
Cloud Computing: Principles and Paradigms
, pp. 664
-
-
Jha, S.1
Katz, D.S.2
Luckow, A.3
Merzky, A.4
Stamou, K.5
-
3
-
-
67650296403
-
Adaptive distributed replica-exchange simulations
-
A. Luckow, S. Jha, J. Kim, A. Merzky, and B. Schnor. Adaptive distributed replica-exchange simulations. Philosophical Transactions of the Royal Society A: Mathematical,Physical and Engineering Sciences, 367(1897):2595-2606, 2009.
-
(2009)
Philosophical Transactions of the Royal Society A: Mathematical,Physical and Engineering Sciences
, vol.367
, Issue.1897
, pp. 2595-2606
-
-
Luckow, A.1
Jha, S.2
Kim, J.3
Merzky, A.4
Schnor, B.5
-
6
-
-
33646943202
-
Molecular Dynamics: Survey of methods for simulating the activity of proteins
-
S. A. Adcock and J. A. McCammon. Molecular Dynamics : Survey of methods for simulating the activity of proteins. Chemical Reviews, 106(5):1589-1615, 2006.
-
(2006)
Chemical Reviews
, vol.106
, Issue.5
, pp. 1589-1615
-
-
Adcock, S.A.1
McCammon, J.A.2
-
7
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
E. R.Mardis. The impact of next-generation sequencing technology on genetics. Trends in Genetics, 24(3):133-141, 2008.
-
(2008)
Trends in Genetics
, vol.24
, Issue.3
, pp. 133-141
-
-
Mardis, E.R.1
-
8
-
-
72849144434
-
Sequencing technologies - The next generation
-
M. L. Metzker. Sequencing technologies - The next generation. Nat. Rev. Genet., 11(1):31-46, 2010.
-
(2010)
Nat. Rev. Genet.
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
9
-
-
72849114230
-
Prokaryotic transcriptomics: A new view on regulation, physiology and pathogenicity
-
R. Sork and P. Cossart. Prokaryotic transcriptomics: A new view on regulation, physiology and pathogenicity. Nat. Rev. Genet., 11:9-16, 2010.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 9-16
-
-
Sork, R.1
Cossart, P.2
-
10
-
-
60149112578
-
Editorial - Bioinformatics for Next Generation Sequencing
-
A. Bateman and J. Quackenbush. Editorial - Bioinformatics for Next Generation Sequencing. Bioinformatics, 25:429, 2009.
-
(2009)
Bioinformatics
, vol.25
, pp. 429
-
-
Bateman, A.1
Quackenbush, J.2
-
11
-
-
80052320606
-
-
G. F. Joyce and L. E. Orgel. pages 49-77. Cold Spring Harbor Laboratory Press, New York, 1999
-
G. F. Joyce and L. E. Orgel. pages 49-77. Cold Spring Harbor Laboratory Press, New York, 1999.
-
-
-
-
12
-
-
67349260751
-
Non-coding RNAs and new opportunities for the private sector
-
F. F. Costa. Non-coding RNAs and new opportunities for the private sector. Drug Discovery Today, 14:446-452, 2009.
-
(2009)
Drug Discovery Today
, vol.14
, pp. 446-452
-
-
Costa, F.F.1
-
13
-
-
67650713931
-
The Structural and Functional Diversity of Metabolite-Binding Riboswitches
-
A. Roth and R. R. Breaker. The Structural and Functional Diversity of Metabolite-Binding Riboswitches. Annual Review of Biochemistry, 78:305-334, 2009.
-
(2009)
Annual Review of Biochemistry
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
14
-
-
48249104039
-
Riboswitches: Emerging themes in RNA structure and function
-
R. K. Montange and R. T. Batey. Riboswitches: Emerging themes in RNA structure and function. Annual Review of Biophysics, 37:117-133, 2008.
-
(2008)
Annual Review of Biophysics
, vol.37
, pp. 117-133
-
-
Montange, R.K.1
Batey, R.T.2
-
15
-
-
34147104014
-
Bridging the gap in RNA structure prediction
-
DOI 10.1016/j.sbi.2007.03.001, PII S0959440X07000310, Theory and Simulation / Mecromolecular Assemblages
-
B. A. Shapiro, Y. G. Yingling, W. Kasprzak, and E. Bindewald. Bridging the gap in RNA structure prediction. Curr. Op. Struct. Biol., 17:157-165, 2007. (Pubitemid 46575248)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.2
, pp. 157-165
-
-
Shapiro, B.A.1
Yingling, Y.G.2
Kasprzak, W.3
Bindewald, E.4
-
16
-
-
58149113037
-
Design of a Grid Service-Based Platform for in Silico Protein-Ligand Screenings
-
M. J. Levesque, K. Ichikawa, S. Date, and J. H. Haga. Design of a Grid Service-Based Platform for In Silico Protein-Ligand Screenings. Comput Methods Programs Biomed., 93(1):73-82, 2009.
-
(2009)
Comput Methods Programs Biomed.
, vol.93
, Issue.1
, pp. 73-82
-
-
Levesque, M.J.1
Ichikawa, K.2
Date, S.3
Haga, J.H.4
-
17
-
-
77954490710
-
Grid heterogeneity in in-silico experiments: An exploration of drug screening using DOCK on cloud environments
-
W. W. Yim, S. Chien, Y. Kusumoto, S. Date, and J. Haga. Grid heterogeneity in in-silico experiments: an exploration of drug screening using DOCK on cloud environments. Stud. Health Technol. Inform, 159:181-190, 2010.
-
(2010)
Stud. Health Technol. Inform
, vol.159
, pp. 181-190
-
-
Yim, W.W.1
Chien, S.2
Kusumoto, Y.3
Date, S.4
Haga, J.5
-
18
-
-
80052340348
-
-
http://dare.cct.lsu.edu/gateways/dock, http://dare.cct.lsu.edu/gateways/ ngs, http://dare.cct.lsu.edu/gateways/hthp
-
http://dare.cct.lsu.edu/gateways/rfold, http://dare.cct.lsu.edu/gateways/ dock, http://dare.cct.lsu.edu/gateways/ngs, http://dare.cct.lsu.edu/gateways/ hthp.
-
-
-
-
19
-
-
80052324453
-
-
http://pylonshq.com.
-
-
-
-
23
-
-
78649999991
-
Exploring the RNA Folding Energy Landscape Using Scalable Distributed Cyberinfrastructure
-
J. Kim, W. Huang, S. Maddineni, F. Aboul-ela, and S. Jha. Exploring the RNA Folding Energy Landscape Using Scalable Distributed Cyberinfrastructure. In ACM International Symposium on High Performance Distributed Computing (HPDC2010), June 2010.
-
ACM International Symposium on High Performance Distributed Computing (HPDC2010), June 2010
-
-
Kim, J.1
Huang, W.2
Maddineni, S.3
Aboul-ela, F.4
Jha, S.5
-
25
-
-
80052309839
-
Astractions for Loosely-Coupled and Ensemble-based Simulations on Microsoft Azure
-
accepted for
-
A. Luckow and S. Jha*, \Astractions for Loosely-Coupled and Ensemble-based Simulations on Microsoft Azure", accepted for IEEE CloudCom (Dec 2010).
-
IEEE CloudCom (Dec 2010)
-
-
Luckow, A.1
Jha, S.2
-
26
-
-
77954940474
-
Efficient runtime environment for coupled multi-physics simulations: Dynamic resource alloca tion and load-balancing
-
Washington, DC, USA, IEEE Computer Society
-
Soon-Heum Ko, N.a.y.o.n.g. Kim, J.o.o.h.y.u.n. Kim, A.b.h.i.n.a.v. Thota, and S.h.a.n.t.e.n.u. Jha. Efficient runtime environment for coupled multi-physics simulations: Dynamic resource alloca tion and load-balancing. In Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Gri d Computing, CC-GRID '10, pages 349-358, Washington, DC, USA, 2010. IEEE Computer Society.
-
(2010)
Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Gri D Computing, CC-GRID '10
, pp. 349-358
-
-
Ko, S.-H.1
Kim, N.2
Kim, J.3
Thota, A.4
Jha, S.5
-
27
-
-
80052327009
-
Energy Landscape Analysis for Regulatory RNA Finding using Scalable Distributed Cyberinfrastructure
-
submitted to
-
J. Kim, W. Huang, S. Maddineni, F. Aboul-ela, and S. Jha. Energy Landscape Analysis for Regulatory RNA Finding using Scalable Distributed Cyberinfrastructure. submitted to Concurrency and Computation: Practice and Experience, 2011.
-
(2011)
Concurrency and Computation: Practice and Experience
-
-
Kim, J.1
Huang, W.2
Maddineni, S.3
Aboul-ela, F.4
Jha, S.5
-
28
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
G. M. Morris, D. S. Goodsell, R.S. Halliday, R. Huey, W. E. Hart, R. K. Belew, and A. J. Olson. (1998), Automated Docking Using a Lamarckian Genetic Algorithm and and Empirical Binding Free Energy Function. J. Comp. Chem., 19:1639-1662, 1998. (Pubitemid 128590223)
-
(1998)
Journal of Computational Chemistry
, vol.19
, Issue.14
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
|