Open Grid Computing Environments: Advanced gateway support activities

Proceedings of the 2010 TeraGrid Conference, TG '10

Volumn , Issue , 2010, Pages

  Pierce, Marlon ^a   Marru, Suresh ^a   Singh, Raminder ^a   Kulshrestha, Archit ^a   Muthuraman, Karthik ^b  

^a INDIANA UNIVERSITY   (United States)

^b INDIANA UNIVERSITY   (United States)

Author keywords

ASTA; OGCE software; Science gateways workow suite

Indexed keywords

ASTA; JOB MANAGEMENT; JOB SUBMISSION; OGCE SOFTWARE; OPEN GRID COMPUTING; SCIENCE GATEWAY; SOFTWARE STACKS; TERAGRID; USER SUPPORT;

BIOINFORMATICS; COMPUTATIONAL CHEMISTRY;

GRID COMPUTING;

EID: 77956277723     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1838574.1838590     Document Type: Conference Paper

References (27)

1. J. Alameda, M. Christie, G. Fox, J. Futrelle, D. Gannon, M. Hategan, G. Kandaswamy, G. Von Laszewski, M. Nacar, M. Pierce, et al. The Open Grid Computing Environments collaboration: portlets and services for science gateways. Concurrency and computation, 19(6):921, 2007.
2. J. Alameda, R. Wilhelmson, A. Rossi, S. Hampton, B. Jewett, T. Baltzer, and A. Wilson. Siege: a graphical user interface to enable management of large numbers of weather simulations. Urbana, 51:61801.
3. I. Altintas, C. Berkley, E. Jaeger, M. Jones, B. Ludascher, and S. Mock. Kepler: An extensible system for design and execution of scientific workows. In Scientific and Statistical Database Management, 2004, pages 423-424, 2004.
4. T. Andrews et al. Business process execution language for web services, version 1.1, May 2003.
5. J. Basney, M. Humphrey, and V. Welch. The MyProxy online credential repository. Software-Practice and Experience, 35(9):801-816, 2005.
6. M. Christie and S. Marru. The lead portal: a teragrid gateway and application service architecture: Research articles. Concurr. Comput. : Pract. Exper., 19(6):767-781, 2007.
7. E. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, S. Patil, M. Su, K. Vahi, and M. Livny. Pegasus: Mapping scientific workows onto the grid. In Grid Computing, pages 11-20. Springer, 2004.
8. B. Demeler. UltraScan: a comprehensive data analysis software package for analytical ultracentrifugation experiments. Analytical Ultracentrifugation: Techniques And Methods, pages 210-229, 2005.
9. R. Dooley, K. Milfeld, C. Guiang, S. Pamidighantam, and G. Allen. From proposal to production: Lessons learned developing the computational chemistry grid cyberinfrastructure. Journal of Grid Computing, 4(2):195-208, 2006.
10. I. Foster. Globus toolkit version 4: Software for service-oriented systems. Journal of Computer Science and Technology, 21(4):513-520, 2006.
11. D. Fraser, S. Marru, et al. Engaging with the lead science gateway project: Lessons learned in successfully deploying complex system solutions on teragrid. In TeraGrid Conference, 2008.
12. T. Gunarathne, C. Herath, E. Chinthaka, and S. Marru. Experience with adapting a WS-BPEL runtime for eScience workows. In Proceedings of the 5th Grid Computing Environments Workshop, pages 1-10. ACM, 2009.
13. S. Jensen and B. Plale. Using Characteristics of Computational Science Schemas for Workow Metadata Management. In IEEE Congress on Services-Part I, 2008. SERVICES'08, pages 445-452, 2008.
14. T. Laue and W. Staord III. Modern applications of analytical ultracentrifugation. Annual review of biophysics and biomolecular structure, 28(1):75-100, 1999.
15. L. Liming, J. Navarro, E. Blau, J. Brechin, C. Catlett, M. Dahan, D. Diehl, R. Dooley, M. Dwyer, K. Ericson, et al. TeraGrid's integrated information service. In Proceedings of the 5th Grid Computing Environments Workshop, pages 1-10. ACM, 2009.
16. S. Marru, S. Perera, M. Feller, and S. Martin. Reliable and Scalable Job Submission: LEAD Science Gateway Õs Testing and Experiences with WS GRAM on TeraGrid Resources. In TeraGrid Conference, 2008.
17. NCBI. Fasta format description. http://www.ncbi.nlm.nih.gov/blast/fasta. shtml.
18. OGCE. Grid based est sequence assembly pipeline. http://swarm.cgb. indiana.edu/.
19. T. Oinn, M. Addis, J. Ferris, D. Marvin, M. Greenwood, T. Carver, M. Pocock, A. Wipat, and P. Li. Taverna: a tool for the composition and enactment of bioinformatics workows. Bioinformatics, 2004.
20. S. Pallickara, M. Pierce, Q. Dong, and C. Kong. Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters. In ppam 2009, Poland, 2009.
21. S. Perera, S. Marru, T. Gunarathne, D. Gannon, and B. Plale. Application of management frameworks to manage workow-based systems: A case study on a large scale e-science project. In Web Services, IEEE International Conference on, 2009.
22. S. Perera, S. Marru, and C. Herath. Workow Infrastructure for Multi-scale Science Gateways. In TeraGrid Conference, June, 2008.
23. A. Rajasekar, R. Moore, and F. Vernon. iRODS: A Distributed Data Management Cyberinfrastructure for Observatories. In AGU Fall Meeting Abstracts, page 1214, 2007.
24. I. Sfiligoi and B. Holzman. An objective comparison test of workload management systems. In Journal of Physics: Conference Series, volume 119, page 062043. Institute of Physics Publishing, 2008.
25. UltraScan. Ultrascan publications. http://www.demeler.uthscsa.edu/ ultrascan-publications.
26. J. Von Welch, J. Basney, D. Marcusiu, and N. Wilkins-Diehr. A AAAA model to support science gateways with community accounts. Concurrency and Computation: Practice and Experience, pages 893-904, 2006.
27. N. Wilkins-Diehr, D. Gannon, G. Klimeck, S. Oster, and S. Pamidighantam. TeraGrid Science Gateways and Their Impact on Science. Computer, 41(11), 2008.