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Volumn 45, Issue 16, 2011, Pages 5211-5217

Development of a rapid DNA extraction method and one-step nested PCR for the detection of Naegleria fowleri from the environment

Author keywords

Detection; DNA extraction; Ecology; Naegleria fowleri; Nested PCR; PAM

Indexed keywords

AQUATIC ORGANISMS; DNA; EXTRACTION; NUCLEAR FUELS; POLYMERASE CHAIN REACTION; WATER POLLUTION;

EID: 80052264768     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2011.07.025     Document Type: Article
Times cited : (13)

References (61)
  • 2
    • 79959836253 scopus 로고    scopus 로고
    • Development of a nested PCR for environmental detection of the pathogenic free-living amoeba Balamuthia mandrillaris
    • Ahmad A.F., Andrew P.W., Kilvington S. Development of a nested PCR for environmental detection of the pathogenic free-living amoeba Balamuthia mandrillaris. Journal of Eukaryotic Microbiology 2011, 58(3):269-271.
    • (2011) Journal of Eukaryotic Microbiology , vol.58 , Issue.3 , pp. 269-271
    • Ahmad, A.F.1    Andrew, P.W.2    Kilvington, S.3
  • 8
    • 0017988260 scopus 로고
    • Primary amoebic meningoencephalitis (A " new" disease associated with water pollution)
    • Carter S.A. Primary amoebic meningoencephalitis (A " new" disease associated with water pollution). International Journal of Environmental Studies 1978, 12:199-205.
    • (1978) International Journal of Environmental Studies , vol.12 , pp. 199-205
    • Carter, S.A.1
  • 9
    • 37049249571 scopus 로고
    • Amoebic meningoencephalitis: sixteen fatalities
    • Cerva L., Novak K. Amoebic meningoencephalitis: sixteen fatalities. Science 1968, 160:92.
    • (1968) Science , vol.160 , pp. 92
    • Cerva, L.1    Novak, K.2
  • 11
    • 0034893652 scopus 로고    scopus 로고
    • The amoeba-to-flagellate transformation test is not reliable for the diagnosis of the genus Naegleria. Description of three new Naegleria spp
    • De Jonckheere J.F., Brown S., Dobson P.J., Robinson B.S., Pernin P. The amoeba-to-flagellate transformation test is not reliable for the diagnosis of the genus Naegleria. Description of three new Naegleria spp. Protist 2001, 152(2):115-121.
    • (2001) Protist , vol.152 , Issue.2 , pp. 115-121
    • De Jonckheere, J.F.1    Brown, S.2    Dobson, P.J.3    Robinson, B.S.4    Pernin, P.5
  • 13
    • 22144470189 scopus 로고    scopus 로고
    • Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
    • Fierer N., Jackson J.A., Vilgalys R., Jackson R.B. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Applied and Environmental Microbiology 2005, 71(7):4117-4120.
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.7 , pp. 4117-4120
    • Fierer, N.1    Jackson, J.A.2    Vilgalys, R.3    Jackson, R.B.4
  • 14
    • 77954293495 scopus 로고    scopus 로고
    • Practical method for extraction of PCR-quality DNA from environmental soil samples
    • Fitzpatrick K.A., Kersh G.J., Massung R.F. Practical method for extraction of PCR-quality DNA from environmental soil samples. Applied and Environmental Microbiology 2010, 76(13):4571-4573.
    • (2010) Applied and Environmental Microbiology , vol.76 , Issue.13 , pp. 4571-4573
    • Fitzpatrick, K.A.1    Kersh, G.J.2    Massung, R.F.3
  • 15
    • 0024995918 scopus 로고
    • Differentiation of Naegleria fowleri from Acanthamoeba species by using monoclonal antibodies and flow cytometry
    • Flores B.M., Garcia C.A., Stamm W.E., Torian B.E. Differentiation of Naegleria fowleri from Acanthamoeba species by using monoclonal antibodies and flow cytometry. Journal of Clinical Microbiology 1990, 28:1999-2005.
    • (1990) Journal of Clinical Microbiology , vol.28 , pp. 1999-2005
    • Flores, B.M.1    Garcia, C.A.2    Stamm, W.E.3    Torian, B.E.4
  • 16
    • 78049314551 scopus 로고    scopus 로고
    • Swimming with death: Naegleria fowleri infections in recreational waters
    • Heggie T.W. Swimming with death: Naegleria fowleri infections in recreational waters. Travel Medicine and Infectious Disease 2010, 8(4):201-206.
    • (2010) Travel Medicine and Infectious Disease , vol.8 , Issue.4 , pp. 201-206
    • Heggie, T.W.1
  • 18
    • 62949207778 scopus 로고    scopus 로고
    • Survey for the presence of Naegleria fowleri amebae in lake water used to cool reactors at a nuclear power generating plant
    • Jamerson M., Remmers K., Cabral G., Marciano-Cabral F. Survey for the presence of Naegleria fowleri amebae in lake water used to cool reactors at a nuclear power generating plant. Parasitology Research 2009, 104(5):969-978.
    • (2009) Parasitology Research , vol.104 , Issue.5 , pp. 969-978
    • Jamerson, M.1    Remmers, K.2    Cabral, G.3    Marciano-Cabral, F.4
  • 19
    • 0020347032 scopus 로고
    • Primary amoebic meningoencephalitis and the biology of Naegleria fowleri
    • John D.T. Primary amoebic meningoencephalitis and the biology of Naegleria fowleri. Annual Review of Microbiology 1982, 36:101-103.
    • (1982) Annual Review of Microbiology , vol.36 , pp. 101-103
    • John, D.T.1
  • 20
    • 0030453967 scopus 로고    scopus 로고
    • Techniques for isolating thermotolerant and pathogenic freeliving amebae
    • John D.T., Howard M.J. Techniques for isolating thermotolerant and pathogenic freeliving amebae. Folia Parasitologica 1996, 43:267-271.
    • (1996) Folia Parasitologica , vol.43 , pp. 267-271
    • John, D.T.1    Howard, M.J.2
  • 21
    • 0001365251 scopus 로고
    • Naegleria australiensis sp. nov., another pathogenic Naegleria from water
    • De Jonckheere J.F. Naegleria australiensis sp. nov., another pathogenic Naegleria from water. Protistologica 1981, XVII:423-429.
    • (1981) Protistologica , vol.17 , pp. 423-429
    • De Jonckheere, J.F.1
  • 22
    • 0020471734 scopus 로고
    • Isoenzyme pattrerns of pathogenic and non-pathogenic Naegleria spp. using agarose isoelectric focusing
    • De Jonckheere J.F. Isoenzyme pattrerns of pathogenic and non-pathogenic Naegleria spp. using agarose isoelectric focusing. Annales de l'Institut Pasteur Microbiology 1982, 133:319-342.
    • (1982) Annales de l'Institut Pasteur Microbiology , vol.133 , pp. 319-342
    • De Jonckheere, J.F.1
  • 23
    • 0023236627 scopus 로고
    • Characterisation of Naegleria species by restriction endonuclease digestion of whole-cell DNA
    • De Jonckheere J.F. Characterisation of Naegleria species by restriction endonuclease digestion of whole-cell DNA. Molecular and Biochemical Parasitology 1987, 24:55-66.
    • (1987) Molecular and Biochemical Parasitology , vol.24 , pp. 55-66
    • De Jonckheere, J.F.1
  • 24
    • 0042549262 scopus 로고
    • Epidemiology
    • Piccin Nuova Libraria, E.G. Rondanelli (Ed.)
    • De Jonckheere J.F. Epidemiology. Amphizoic Amoebae, Human Pathology 1987, 127-147. Piccin Nuova Libraria. E.G. Rondanelli (Ed.).
    • (1987) Amphizoic Amoebae, Human Pathology , pp. 127-147
    • De Jonckheere, J.F.1
  • 25
    • 0036849174 scopus 로고    scopus 로고
    • A Century of research on the amoeboflagellate genus Naegleria
    • De Jonckheere J.F. A Century of research on the amoeboflagellate genus Naegleria. Acta Protozoologica 2002, 41:309-342.
    • (2002) Acta Protozoologica , vol.41 , pp. 309-342
    • De Jonckheere, J.F.1
  • 26
    • 0028859533 scopus 로고
    • Identification of Naegleria fowleri and other Naegleria spp. (free-living amoebae) using cellulose acetate membrane electrophoresis of glucose phosphate isomerase
    • Kilvington S. Identification of Naegleria fowleri and other Naegleria spp. (free-living amoebae) using cellulose acetate membrane electrophoresis of glucose phosphate isomerase. FEMS Microbiology Letters 1995, 133(3):219-223.
    • (1995) FEMS Microbiology Letters , vol.133 , Issue.3 , pp. 219-223
    • Kilvington, S.1
  • 27
    • 0029018033 scopus 로고
    • Identification and epidemiological typing of Naegleria fowleri with DNA probes
    • Kilvington S., Beeching J. Identification and epidemiological typing of Naegleria fowleri with DNA probes. Applied and Environmental Microbiology 1995, 61(6):2071-2078.
    • (1995) Applied and Environmental Microbiology , vol.61 , Issue.6 , pp. 2071-2078
    • Kilvington, S.1    Beeching, J.2
  • 28
    • 0028832484 scopus 로고
    • Development of a PCR for identification of Naegleria fowleri from the environment
    • Kilvington S., Beeching J. Development of a PCR for identification of Naegleria fowleri from the environment. Applied and Environmental Microbiology 1995, 61(10):3764-3767.
    • (1995) Applied and Environmental Microbiology , vol.61 , Issue.10 , pp. 3764-3767
    • Kilvington, S.1    Beeching, J.2
  • 29
    • 0030805497 scopus 로고    scopus 로고
    • Detection of a novel restriction fragment length polymorphism type in Naegleria fowleri (free-living amoeba) isolates from electricity power stations in England and France
    • Kilvington S., Beeching J. Detection of a novel restriction fragment length polymorphism type in Naegleria fowleri (free-living amoeba) isolates from electricity power stations in England and France. European Journal of Protistology 1997, 33:186-191.
    • (1997) European Journal of Protistology , vol.33 , pp. 186-191
    • Kilvington, S.1    Beeching, J.2
  • 30
    • 1842268089 scopus 로고
    • Pathogenic Naegleria amoebae in the waters of Bath: a fatality and its consequence
    • G.A. Kellaway (Ed.)
    • Kilvington S., Mann P.G., Warhurst D.C. Pathogenic Naegleria amoebae in the waters of Bath: a fatality and its consequence. Hot Springs of Bath 1991, 89-96. G.A. Kellaway (Ed.).
    • (1991) Hot Springs of Bath , pp. 89-96
    • Kilvington, S.1    Mann, P.G.2    Warhurst, D.C.3
  • 31
    • 77954761053 scopus 로고    scopus 로고
    • Concentration of Naegleria fowleri in natural waters used for recreational purposes in Sonora, Mexico (November 2007-October 2008)
    • Lares-Villa F., Hernandez-Pena C. Concentration of Naegleria fowleri in natural waters used for recreational purposes in Sonora, Mexico (November 2007-October 2008). Experimental Parasitology 2010, 126(1):33-36.
    • (2010) Experimental Parasitology , vol.126 , Issue.1 , pp. 33-36
    • Lares-Villa, F.1    Hernandez-Pena, C.2
  • 33
    • 3142749215 scopus 로고    scopus 로고
    • The identification of Naegleria fowleri from water and soil samples by nested PCR
    • Maclean R.C., Richardson D.J., LePardo R., Marciano-Cabral F. The identification of Naegleria fowleri from water and soil samples by nested PCR. Parasitology Research 2004, 93(3):211-217.
    • (2004) Parasitology Research , vol.93 , Issue.3 , pp. 211-217
    • Maclean, R.C.1    Richardson, D.J.2    LePardo, R.3    Marciano-Cabral, F.4
  • 36
    • 0027359007 scopus 로고
    • Free-living amebas: infection of the central nervous system
    • Martinez A.J. Free-living amebas: infection of the central nervous system. Mount Sinai Journal of Medicine 1993, 60(4):271-278.
    • (1993) Mount Sinai Journal of Medicine , vol.60 , Issue.4 , pp. 271-278
    • Martinez, A.J.1
  • 37
    • 0031047389 scopus 로고    scopus 로고
    • Free-living, amphizoic and opportunistic amebas
    • Martinez A.J., Visvesvara G.S. Free-living, amphizoic and opportunistic amebas. Brain Pathology 1997, 7(1):583-598.
    • (1997) Brain Pathology , vol.7 , Issue.1 , pp. 583-598
    • Martinez, A.J.1    Visvesvara, G.S.2
  • 38
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni M.A., Martin F.E., Jacques N.A., Hunter N. Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 2002, 148(Pt 1):257-266.
    • (2002) Microbiology , vol.148 , Issue.PART 1 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 39
    • 0003590781 scopus 로고
    • Freshwater Biological Association, Ambleside, Cumbria, F.C. Page (Ed.)
    • A New Key to Freshwater and soil Gymnamoebae 1988, Freshwater Biological Association, Ambleside, Cumbria. F.C. Page (Ed.).
    • (1988) A New Key to Freshwater and soil Gymnamoebae
  • 40
    • 0036206280 scopus 로고    scopus 로고
    • Use of multiplex PCR and PCR restriction enzyme analysis for detection and exploration of the variability in the free-living amoeba Naegleria in the environment
    • Pelandakis M., Pernin P. Use of multiplex PCR and PCR restriction enzyme analysis for detection and exploration of the variability in the free-living amoeba Naegleria in the environment. Applied and Environmental Microbiology 2002, 68(4):2061-2065.
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.4 , pp. 2061-2065
    • Pelandakis, M.1    Pernin, P.2
  • 42
    • 0024319505 scopus 로고
    • Application of isoenzymatic typing to the identification of nonaxenic strains of Naegleria (Protozoa, Rhizopoda)
    • Pernin P., Grelaud G. Application of isoenzymatic typing to the identification of nonaxenic strains of Naegleria (Protozoa, Rhizopoda). Parasitology Research 1989, 75(8):595-598.
    • (1989) Parasitology Research , vol.75 , Issue.8 , pp. 595-598
    • Pernin, P.1    Grelaud, G.2
  • 43
    • 69649091734 scopus 로고    scopus 로고
    • Rapid detection of Naegleria fowleri in water distribution pipeline biofilms and drinking water samples
    • Puzon G.J., Lancaster J.A., Wylie J.T., Plumb I.J. Rapid detection of Naegleria fowleri in water distribution pipeline biofilms and drinking water samples. Environmental Science and Technology 2009, 43(17):6691-6696.
    • (2009) Environmental Science and Technology , vol.43 , Issue.17 , pp. 6691-6696
    • Puzon, G.J.1    Lancaster, J.A.2    Wylie, J.T.3    Plumb, I.J.4
  • 44
    • 33845927414 scopus 로고    scopus 로고
    • Multiplex real-time PCR assay for simultaneous detection of Acanthamoeba spp., Balamuthia mandrillaris, and Naegleria fowleri
    • Qvarnstrom Y., Visvesvara G.S., Sriram R., da Silva A.J. Multiplex real-time PCR assay for simultaneous detection of Acanthamoeba spp., Balamuthia mandrillaris, and Naegleria fowleri. Journal of Clinical Microbiology 2006, 44(10):3589-3595.
    • (2006) Journal of Clinical Microbiology , vol.44 , Issue.10 , pp. 3589-3595
    • Qvarnstrom, Y.1    Visvesvara, G.S.2    Sriram, R.3    da Silva, A.J.4
  • 45
    • 0033826341 scopus 로고    scopus 로고
    • Species specificity of a monoclonal antibody produced to Naegleria fowleri and partial characterization of its antigenic determinant
    • Reveiller F.L., Marciano-Cabral F., Pernin P., Cabanes P.A., Legastelois S. Species specificity of a monoclonal antibody produced to Naegleria fowleri and partial characterization of its antigenic determinant. Parasitology Research 2000, 86(8):634-641.
    • (2000) Parasitology Research , vol.86 , Issue.8 , pp. 634-641
    • Reveiller, F.L.1    Marciano-Cabral, F.2    Pernin, P.3    Cabanes, P.A.4    Legastelois, S.5
  • 46
    • 0036220003 scopus 로고    scopus 로고
    • Development of a nested PCR assay to detect the pathogenic free-living amoeba Naegleria fowleri
    • Reveiller F.L., Cabanes P.A., Marciano-Cabral F. Development of a nested PCR assay to detect the pathogenic free-living amoeba Naegleria fowleri. Parasitology Research 2002, 88(5):443-450.
    • (2002) Parasitology Research , vol.88 , Issue.5 , pp. 443-450
    • Reveiller, F.L.1    Cabanes, P.A.2    Marciano-Cabral, F.3
  • 47
    • 33748789306 scopus 로고    scopus 로고
    • Rapid, sensitive, and discriminating identification of Naegleria spp. by real-time PCR and melting-curve analysis
    • Robinson B.S., Monis P.T., Dobson P.J. Rapid, sensitive, and discriminating identification of Naegleria spp. by real-time PCR and melting-curve analysis. Applied and Environmental Microbiology 2006, 72(9):5857-5863.
    • (2006) Applied and Environmental Microbiology , vol.72 , Issue.9 , pp. 5857-5863
    • Robinson, B.S.1    Monis, P.T.2    Dobson, P.J.3
  • 49
    • 4243178226 scopus 로고    scopus 로고
    • Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals
    • Schuster F.L., Visvesvara G.S. Free-living amoebae as opportunistic and non-opportunistic pathogens of humans and animals. International Journal for Parasitology 2004, 34(9):1001-1027.
    • (2004) International Journal for Parasitology , vol.34 , Issue.9 , pp. 1001-1027
    • Schuster, F.L.1    Visvesvara, G.S.2
  • 50
    • 0142040902 scopus 로고    scopus 로고
    • PCR detection and analysis of the free-living amoeba Naegleria in hot springs in yellowstone and grand teton national Parks
    • Sheehan K.B., Fagg J.A., Ferris M.J., Henson J.M. PCR detection and analysis of the free-living amoeba Naegleria in hot springs in yellowstone and grand teton national Parks. Applied and Environmental Microbiology 2003, 69(10):5914-5918.
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.10 , pp. 5914-5918
    • Sheehan, K.B.1    Fagg, J.A.2    Ferris, M.J.3    Henson, J.M.4
  • 51
    • 0027219795 scopus 로고
    • Differentiation of Naegleria fowleri and other Naegleriae by polymerase chain reaction and hybridization methods
    • Sparagano O. Differentiation of Naegleria fowleri and other Naegleriae by polymerase chain reaction and hybridization methods. FEMS Microbiology Letters 1993, 110(3):325-330.
    • (1993) FEMS Microbiology Letters , vol.110 , Issue.3 , pp. 325-330
    • Sparagano, O.1
  • 52
    • 0018823676 scopus 로고
    • Naegleria lovaniensis new species: isolation and identification of six thermophilic strains of a new species found in association with Naegleria fowleri
    • Stevens A.R., De Jonckheere J.F., Willaert E. Naegleria lovaniensis new species: isolation and identification of six thermophilic strains of a new species found in association with Naegleria fowleri. International Journal of Parasitology 1980, 10:51-64.
    • (1980) International Journal of Parasitology , vol.10 , pp. 51-64
    • Stevens, A.R.1    De Jonckheere, J.F.2    Willaert, E.3
  • 53
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction
    • Tsai Y.L., Olson B.H. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Applied and Environmental Microbiology 1992, 58:2292-2295.
    • (1992) Applied and Environmental Microbiology , vol.58 , pp. 2292-2295
    • Tsai, Y.L.1    Olson, B.H.2
  • 54
    • 61449237181 scopus 로고    scopus 로고
    • Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity
    • Tzeneva V.A., Salles J.F., Naumova N., de Vos W.M., Kuikman P.J., Dolfing J., Smidt H. Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity. Research in Microbiology 2009, 160(2):89-98.
    • (2009) Research in Microbiology , vol.160 , Issue.2 , pp. 89-98
    • Tzeneva, V.A.1    Salles, J.F.2    Naumova, N.3    de Vos, W.M.4    Kuikman, P.J.5    Dolfing, J.6    Smidt, H.7
  • 55
    • 0026731464 scopus 로고
    • Genotyping Naegleria spp. and Naegleria fowleri isolates by interrepeat polymerase chain reaction
    • van Belkum A., De Jonckheere J., Quint W.G.V. Genotyping Naegleria spp. and Naegleria fowleri isolates by interrepeat polymerase chain reaction. Journal of Clinical Microbiology 1992, 30:2595-2598.
    • (1992) Journal of Clinical Microbiology , vol.30 , pp. 2595-2598
    • van Belkum, A.1    De Jonckheere, J.2    Quint, W.G.V.3
  • 58
    • 34248569659 scopus 로고    scopus 로고
    • Pathogenic and opportunistic free-living amoebae: Acanthamoeba spp., Balamuthia mandrillaris, Naegleria fowleri, and Sappinia diploidea
    • Visvesvara G.S., Moura H., Schuster F.L. Pathogenic and opportunistic free-living amoebae: Acanthamoeba spp., Balamuthia mandrillaris, Naegleria fowleri, and Sappinia diploidea. FEMS Immunology and Medical Microbiology 2007, 50(1):1-26.
    • (2007) FEMS Immunology and Medical Microbiology , vol.50 , Issue.1 , pp. 1-26
    • Visvesvara, G.S.1    Moura, H.2    Schuster, F.L.3


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