Diffusion-photodynamics coupling in fluorescence correlation spectroscopy studies of photoswitchable green fluorescent proteins: An analytical and simulative study

Journal of Physical Chemistry B

Volumn 115, Issue 34, 2011, Pages 10311-10321

  Daglio, S C ^a   Banterle, N ^a   D'Alfonso, L ^a   Collini, M ^a   Chirico, G ^a  

^a UNIVERSITY OF MILANO BICOCCA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

BROWNIAN MOVEMENT; CHROMOPHORES; DIFFUSION; FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; REGRESSION ANALYSIS;

ANALYTICAL PREDICTIONS; AUTOCORRELATION FUNCTIONS; COMPLEX ENERGY; DARK STATE; DIFFUSION PROCESS; DIFFUSION TIME; FLUORESCENCE CORRELATION SPECTROSCOPY; GREEN FLUORESCENT PROTEIN; LONG RESIDENCE TIME; MODEL SCALE; ORDERS OF MAGNITUDE; PHOTO-SWITCHABLE; SQUARE ROOTS; TIME-SCALES; TRAPPING RATE;

PROTEINS;

EID: 80052255749     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp205147n     Document Type: Article

References (43)

1. Magde, D.; Elson, E.; Webb, W. W. Phys. Rev. Lett. 1972, 29, 705
2. Chen, Y.; Muller, J. D.; So, P.; Gratton, E. Biophys. J. 1999, 77, 553
3. Chirico, G.; Olivini, F.; Beretta, S. Appl. Spectrosc. 2000, 54, 1084
4. Jung, J.; Brauchle, C.; Zumbusch, A. J. Chem. Phys. 2001, 114, 3149
5. Bosisio, C.; Quercioli, V; Collini, M.; D'Alfonso, L.; Baldini, G.; Bettati, S.; Campanini, B.; Raboni, S.; Chirico, G. J. Phys. Chem. B 2008, 112, 8806
6. Quercioli, V.; Bosisio, C.; Daglio, S. C.; Rocca, F.; D'Alfonso, L.; Collini, M.; Baldini, G.; Chirico, G.; Bettati, S.; Raboni, S.; Campanini, B. J. Phys.Chem. B 2010, 114, 4664
7. Schwille, P.; Korlach, J.; Webb, W. W. Cytometry 1999, 36, 176
8. Haustein, E.; Schwille, P. Curr. Opin. Struct. Biol. 2004, 14, 531
9. Kim, S. A.; Heinze, K. G.; Schwille, P. Nat. Methods 2007, 4, 963
10. Day, R. N.; Davidson, M. W. Chem. Soc. Rev. 2009, 38, 2887
11. Bizzarri, R.; Serresi, M.; Luin, S.; Beltram, F. Anal. Bioanal. Chem. 2009, 393, 1107
12. Magde, D.; Webb, W. W.; Elson, E. L. Biopolymers 1974, 13, 29
13. Schwille, P.; Haupts, U.; Maiti, S; Webb, W. W. Biophys. J. 1999, 77, 2251
14. Dittrich, P. S.; Schwille, P. Appl. Phys. B: Laser Opt. 2001, 73, 829
15. Schwille, P. Cell Biochem. Biophys. 2001, 34, 382
16. Haupts, U.; Maiti, S.; Schwille, P.; Webb, W. W. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 13573
17. Widengren, J.; Terry, B.; Rigler, R. Chem. Phys. 1999, 249, 259
18. Jung, G.; Mais, S.; Zumbusch, A.; Bräuchle, C. J. Phys. Chem. A 2000, 104, 873
19. Chen, Y; Müller, J, D.; Ruan, Q. Q.; Gratton, E. Biophys. J. 2002, 82, 133
20. Hess, S. T.; Heikal, A. A.; Webb, W. W. J. Phys. Chem. B 2004, 108, 10138
21. Veettil, S.; Budisa, N.; Jung, G. Biophys. Chem. 2008, 136, 38
22. Elson, E. L.; Magde, D. Biopolymers 1974, 13, 1
23. Enderlein, J.; Gregor, I.; Patra, D.; Dertinger, T.; Kaupp, U. B. ChemPhysChem 2005, 6, 2324
24. Gregor, I.; Patra, D.; Enderlein, J. ChemPhysChem 2005, 6, 164
25. Petrášek, Z; Schwille, P. Biophys. J. 2008, 94, 1437
26. Andresen, M.; Stiel, A. C.; Foelling, J.; Wenzel, D.; Schoenle, A.; Egner, A.; Eggeling, C.; Hell, S. W.; Jakobs, S. Nat. Biotechnol. 2008, 26, 1035
27. Hell, S. Nat. Biotechnol. 2003, 21, 1347
28. Widengren, J.; Mets, U.; Rigler, R. Chem. Phys. 1999, 250, 171
29. Bizzarri, R.; Nifosì, R.; Abbruzzetti, S.; Rocchia, W.; Guidi, S.; Arosio, D.; Garau, G.; Campanini, B.; Grandi, E.; Ricci, F.; Viappiani, C.; Beltram, F. Biochemistry 2007, 46, 5494
30. Ando, T.; Meguro, T.; Yamato, I. Mol. Simul 2003, 29, 471
31. Ermak, D. L.; McCammon, J. A. Phys. Rev. Lett. 1978, 69, 1352
32. Chirico, G.; Langowski, J. Macromolecules 1992, 25, 769
33. Doi, M.; Edwards, S. F. The Theory of Ploymer Dynamics; Clarendon Press: Oxford, UK, 1986; pp 46-89.
34. Gillespie, D. J. Comput. Phys. 1976, 22, 403
35. Bizzarri, R; Serresi, M.; Cardarelli, F.; Abbruzzetti, S.; Campanini, B.; Viappiani, C.; Beltram, F. J. Am. Chem. Soc. 2010, 132, 85
36. Jung, G.; Wiehler, J.; Zumbusch, A. Biophys. J. 2005, 88, 1932
37. Albota, M. A.; Xu, C.; Webb, W. W. Appl. Opt. 1998, 37, 7352
38. Blab, G. A.; Lommerse, P. H. M.; Cognet, L.; Harms, G. S.; Schmidt, T. Chem. Phys. Lett. 2001, 350, 71
39. Mertz, J. Eur. Phys. J. D 1998, 3, 53
40. Eggeling, C.; Widengren, J.; Brand, L.; Schaffer, J.; Felekyan, S.; Seidel, C.A.M. J. Phys. Chem. A 2006, 110, 2979
41. Petrášek, Z; Schwille, P. ChemPhysChem 2008, 9, 147
42. Widengren, J.; Mets, U.; Rigler, R. J. Chem. Phys. B 1995, 99, 13368
43. Sneddon, I. N. Fourier Transform; Dover Inc.: New York, USA, 1995.